RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 IGHV3-38A0A0C4DH36 116 aa11.8□□□□□ -0.52
COL4A1-204ENST00000543140 CEMP1Q6PRD7 247 aaPredicted RBP11.79□□□□□ -0.52
COL4A1-204ENST00000543140 PTH2Q96A98 100 aa11.79□□□□□ -0.52
COL4A1-204ENST00000543140 NSD1Q96L73 2696 aaPredicted RBP11.79□□□□□ -0.52
COL4A1-204ENST00000543140 H3BRM9 83 aa11.79□□□□□ -0.52
COL4A1-204ENST00000543140 GIG44P09565 113 aaPredicted RBP11.79□□□□□ -0.52
COL4A1-204ENST00000543140 PHLDA1Q8WV24 401 aaPredicted RBP11.79□□□□□ -0.52
COL4A1-204ENST00000543140 INAFM1C9JVW0 142 aa11.78□□□□□ -0.52
COL4A1-204ENST00000543140 RHODO00212 210 aa11.78□□□□□ -0.52
COL4A1-204ENST00000543140 RS1O15537 224 aa11.78□□□□□ -0.52
COL4A1-204ENST00000543140 CEND1Q8N111 149 aa11.78□□□□□ -0.52
COL4A1-204ENST00000543140 ZNF815PA8K554 130 aa11.78□□□□□ -0.52
COL4A1-204ENST00000543140 H3BUT2 72 aa11.78□□□□□ -0.52
COL4A1-204ENST00000543140 K7ERJ3 54 aa11.78□□□□□ -0.52
COL4A1-204ENST00000543140 IGHV3-53P01767 116 aa11.78□□□□□ -0.52
COL4A1-204ENST00000543140 PAPPA-AS1Q5QFB9 102 aa11.78□□□□□ -0.52
COL4A1-204ENST00000543140 HIST1H4GQ99525 98 aa11.78□□□□□ -0.52
COL4A1-204ENST00000543140 Q6ZTI0 123 aa11.77□□□□□ -0.53
COL4A1-204ENST00000543140 C19orf73Q9NVV2 129 aa11.77□□□□□ -0.53
COL4A1-204ENST00000543140 IGLV4-3A0A075B6K6 122 aa11.77□□□□□ -0.53
COL4A1-204ENST00000543140 C9orf118A6NHY6 69 aa11.77□□□□□ -0.53
COL4A1-204ENST00000543140 VCX2Q9H322 139 aa11.77□□□□□ -0.53
COL4A1-204ENST00000543140 RNASE13Q5GAN3 156 aaKnown RBP11.76□□□□□ -0.53
COL4A1-204ENST00000543140 NHP2Q9NX24 153 aaKnown RBP11.76□□□□□ -0.53
COL4A1-204ENST00000543140 SMIM13P0DJ93 91 aa11.76□□□□□ -0.53
COL4A1-204ENST00000543140 ZNF479Q96JC4 524 aa11.76□□□□□ -0.53
COL4A1-204ENST00000543140 VWFP04275 2813 aa11.76□□□□□ -0.53
COL4A1-204ENST00000543140 PF4P02776 101 aa11.75□□□□□ -0.53
COL4A1-204ENST00000543140 CMC4P56277 68 aaPredicted RBP11.75□□□□□ -0.53
COL4A1-204ENST00000543140 HERVK_113P61574 105 aa11.75□□□□□ -0.53
COL4A1-204ENST00000543140 PLEKHB2Q96CS7 222 aa11.75□□□□□ -0.53
COL4A1-204ENST00000543140 TM2D2Q9BX73 214 aa11.75□□□□□ -0.53
COL4A1-204ENST00000543140 SCGB1D4Q6XE38 83 aa11.75□□□□□ -0.53
COL4A1-204ENST00000543140 IL17DQ8TAD2 202 aa11.75□□□□□ -0.53
COL4A1-204ENST00000543140 TMEM263Q8WUH6 116 aaKnown RBP11.75□□□□□ -0.53
COL4A1-204ENST00000543140 NOP10Q9NPE3 64 aaKnown RBP11.75□□□□□ -0.53
COL4A1-204ENST00000543140 HIVEP1P15822 2718 aa11.74□□□□□ -0.53
COL4A1-204ENST00000543140 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.74□□□□□ -0.53
COL4A1-204ENST00000543140 A0A0J9YXV3 536 aa11.74□□□□□ -0.53
COL4A1-204ENST00000543140 IGKV2-29A2NJV5 120 aaPredicted RBP11.74□□□□□ -0.53
COL4A1-204ENST00000543140 FAM104AQ969W3 186 aa11.74□□□□□ -0.53
COL4A1-204ENST00000543140 TSPEAR-AS2P59090 65 aa11.74□□□□□ -0.53
COL4A1-204ENST00000543140 NDUFA11Q86Y39 141 aa11.74□□□□□ -0.53
COL4A1-204ENST00000543140 CHCHD7Q9BUK0 85 aa11.74□□□□□ -0.53
COL4A1-204ENST00000543140 TENM1Q9UKZ4 2725 aa11.73□□□□□ -0.53
COL4A1-204ENST00000543140 IGHV3-64A0A075B6Q5 118 aa11.73□□□□□ -0.53
COL4A1-204ENST00000543140 TRBV7-3A0A075B6L6 115 aa11.72□□□□□ -0.53
COL4A1-204ENST00000543140 NFE4Q86UQ8 179 aa11.72□□□□□ -0.53
COL4A1-204ENST00000543140 COTL1Q14019 142 aa11.71□□□□□ -0.53
COL4A1-204ENST00000543140 TAL2Q16559 108 aa11.71□□□□□ -0.53
COL4A1-204ENST00000543140 DNAJC30Q96LL9 226 aa11.71□□□□□ -0.53
COL4A1-204ENST00000543140 GAGE12BA1L429 117 aa11.71□□□□□ -0.53
COL4A1-204ENST00000543140 PYGO1Q9Y3Y4 419 aa11.71□□□□□ -0.53
COL4A1-204ENST00000543140 LINC00482Q8N8I6 264 aa11.7□□□□□ -0.54
COL4A1-204ENST00000543140 FAM110AQ9BQ89 295 aa11.7□□□□□ -0.54
COL4A1-204ENST00000543140 GAGE10A6NGK3 116 aa11.7□□□□□ -0.54
COL4A1-204ENST00000543140 SPATA3Q8NHX4 192 aa11.7□□□□□ -0.54
COL4A1-204ENST00000543140 ZNF22P17026 224 aaPredicted RBP11.69□□□□□ -0.54
COL4A1-204ENST00000543140 OCIAD2Q56VL3 154 aa11.69□□□□□ -0.54
COL4A1-204ENST00000543140 CSNK1G2-AS1Q8NCQ2 148 aa11.69□□□□□ -0.54
COL4A1-204ENST00000543140 UBE2D4Q9Y2X8 147 aa11.69□□□□□ -0.54
COL4A1-204ENST00000543140 PLAC8L1A1L4L8 177 aa11.69□□□□□ -0.54
COL4A1-204ENST00000543140 J3QQQ9 107 aa11.69□□□□□ -0.54
COL4A1-204ENST00000543140 GAGE7O76087 117 aa11.69□□□□□ -0.54
COL4A1-204ENST00000543140 GAGE12FP0CL80 117 aa11.69□□□□□ -0.54
COL4A1-204ENST00000543140 GAGE12GP0CL81 117 aa11.69□□□□□ -0.54
COL4A1-204ENST00000543140 GAGE12IP0CL82 117 aa11.69□□□□□ -0.54
COL4A1-204ENST00000543140 SRSF9Q13242 221 aaKnown RBP eCLIP11.69□□□□□ -0.54
COL4A1-204ENST00000543140 AMELXQ99217 191 aa11.69□□□□□ -0.54
COL4A1-204ENST00000543140 TMEM223A0PJW6 202 aa11.68□□□□□ -0.54
COL4A1-204ENST00000543140 SAMD5Q5TGI4 173 aa11.68□□□□□ -0.54
COL4A1-204ENST00000543140 A0A1W2PPM0 123 aa11.68□□□□□ -0.54
COL4A1-204ENST00000543140 SLC25A29Q8N8R3 303 aa11.68□□□□□ -0.54
COL4A1-204ENST00000543140 VPS25Q9BRG1 176 aa11.68□□□□□ -0.54
COL4A1-204ENST00000543140 C1QTNF4Q9BXJ3 329 aa11.68□□□□□ -0.54
COL4A1-204ENST00000543140 ATRQ13535 2644 aa11.68□□□□□ -0.54
COL4A1-204ENST00000543140 TRGV2A0A075B6R0 118 aa11.67□□□□□ -0.54
COL4A1-204ENST00000543140 LGALS3P17931 250 aaKnown RBP11.67□□□□□ -0.54
COL4A1-204ENST00000543140 RRN3P1Q2M238 152 aa11.67□□□□□ -0.54
COL4A1-204ENST00000543140 C12orf74Q32Q52 190 aa11.67□□□□□ -0.54
COL4A1-204ENST00000543140 Q6ZUT4 128 aa11.67□□□□□ -0.54
COL4A1-204ENST00000543140 C16orf74Q96GX8 76 aa11.67□□□□□ -0.54
COL4A1-204ENST00000543140 TRAV4A0A0B4J268 109 aa11.67□□□□□ -0.54
COL4A1-204ENST00000543140 DAZ2Q13117 558 aaKnown RBP11.67□□□□□ -0.54
COL4A1-204ENST00000543140 NBEAL2Q6ZNJ1 2754 aa11.67□□□□□ -0.54
COL4A1-204ENST00000543140 A0A0J9YY99 117 aa11.66□□□□□ -0.54
COL4A1-204ENST00000543140 K7EQD1 137 aa11.66□□□□□ -0.54
COL4A1-204ENST00000543140 SPANXA1Q9NS26 97 aa11.66□□□□□ -0.54
COL4A1-204ENST00000543140 GAGE12JA6NER3 117 aa11.65□□□□□ -0.54
COL4A1-204ENST00000543140 GAGE4Q13068 117 aa11.65□□□□□ -0.54
COL4A1-204ENST00000543140 GAGE5Q13069 117 aa11.65□□□□□ -0.54
COL4A1-204ENST00000543140 GAGE13Q4V321 117 aa11.65□□□□□ -0.54
COL4A1-204ENST00000543140 GTF2H5Q6ZYL4 71 aa11.65□□□□□ -0.54
COL4A1-204ENST00000543140 FABP2P12104 132 aa11.65□□□□□ -0.54
COL4A1-204ENST00000543140 RPL36AP83881 106 aaKnown RBP11.65□□□□□ -0.54
COL4A1-204ENST00000543140 RPL36ALQ969Q0 106 aaKnown RBP11.65□□□□□ -0.54
COL4A1-204ENST00000543140 SPCS1Q9Y6A9 102 aa11.65□□□□□ -0.54
COL4A1-204ENST00000543140 K7EP34 96 aa11.64□□□□□ -0.55
COL4A1-204ENST00000543140 LEPROTO15243 131 aa11.64□□□□□ -0.55
COL4A1-204ENST00000543140 MRPS36P82909 103 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms