RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	TMEM262	E9PQX1	116 aa		10.89	□□□□□ -0.67
DDX55-209	ENST00000542286	NHLRC4	P0CG21	123 aa	Predicted RBP	10.89	□□□□□ -0.67
DDX55-209	ENST00000542286	ORMDL2	Q53FV1	153 aa		10.89	□□□□□ -0.67
DDX55-209	ENST00000542286	SBSPON	Q8IVN8	264 aa		10.89	□□□□□ -0.67
DDX55-209	ENST00000542286	SDHAF1	A6NFY7	115 aa		10.88	□□□□□ -0.67
DDX55-209	ENST00000542286		J3QLI3	93 aa		10.88	□□□□□ -0.67
DDX55-209	ENST00000542286	SCGB1C2	P0DMR2	95 aa		10.88	□□□□□ -0.67
DDX55-209	ENST00000542286	KRTAP1-3	Q8IUG1	177 aa		10.88	□□□□□ -0.67
DDX55-209	ENST00000542286	TMEM61	Q8N0U2	210 aa		10.88	□□□□□ -0.67
DDX55-209	ENST00000542286	CITED1	Q99966	193 aa		10.88	□□□□□ -0.67
DDX55-209	ENST00000542286	RBMY1B	A6NDE4	496 aa	Known RBP	10.88	□□□□□ -0.67
DDX55-209	ENST00000542286	RBMY1E	A6NEQ0	496 aa	Known RBP	10.88	□□□□□ -0.67
DDX55-209	ENST00000542286	CRYGD	P07320	174 aa		10.88	□□□□□ -0.67
DDX55-209	ENST00000542286	RBMY1D	P0C7P1	496 aa	Known RBP	10.88	□□□□□ -0.67
DDX55-209	ENST00000542286	ZNF876P	Q49A33	203 aa		10.88	□□□□□ -0.67
DDX55-209	ENST00000542286	UBE2E2	Q96LR5	201 aa		10.88	□□□□□ -0.67
DDX55-209	ENST00000542286	IGHV1OR15-1	A0A075B7D0	117 aa		10.87	□□□□□ -0.67
DDX55-209	ENST00000542286	NXPH4	O95158	308 aa		10.87	□□□□□ -0.67
DDX55-209	ENST00000542286	UNC79	Q9P2D8	2635 aa		10.87	□□□□□ -0.67
DDX55-209	ENST00000542286	ANK3	Q12955	4377 aa	Known RBP	10.86	□□□□□ -0.67
DDX55-209	ENST00000542286	ELANE	P08246	267 aa		10.86	□□□□□ -0.67
DDX55-209	ENST00000542286	CFC1B	P0CG36	223 aa		10.86	□□□□□ -0.67
DDX55-209	ENST00000542286	CFC1	P0CG37	223 aa		10.86	□□□□□ -0.67
DDX55-209	ENST00000542286	MED14OS	P0DP75	135 aa		10.86	□□□□□ -0.67
DDX55-209	ENST00000542286	CFAP161	Q6P656	301 aa		10.86	□□□□□ -0.67
DDX55-209	ENST00000542286	POLR2K	P53803	58 aa	Known RBP	10.85	□□□□□ -0.67
DDX55-209	ENST00000542286	C9orf85	Q96MD7	179 aa		10.85	□□□□□ -0.67
DDX55-209	ENST00000542286		A0A0J9YY99	117 aa		10.85	□□□□□ -0.67
DDX55-209	ENST00000542286	RHOD	O00212	210 aa		10.85	□□□□□ -0.67
DDX55-209	ENST00000542286	GAGE2B	Q13066	116 aa		10.85	□□□□□ -0.67
DDX55-209	ENST00000542286	GAGE2E	Q4V326	116 aa		10.85	□□□□□ -0.67
DDX55-209	ENST00000542286	GAGE2D	Q9UEU5	116 aa		10.85	□□□□□ -0.67
DDX55-209	ENST00000542286	TRBV7-9	A0A0J9YWB2	115 aa		10.84	□□□□□ -0.67
DDX55-209	ENST00000542286	C11orf86	A6NJI1	115 aa		10.84	□□□□□ -0.67
DDX55-209	ENST00000542286	C10orf126	Q8N4M7	172 aa		10.84	□□□□□ -0.67
DDX55-209	ENST00000542286	NBEAL2	Q6ZNJ1	2754 aa		10.84	□□□□□ -0.67
DDX55-209	ENST00000542286		M0QY20	66 aa		10.83	□□□□□ -0.68
DDX55-209	ENST00000542286	SLC25A20	O43772	301 aa		10.83	□□□□□ -0.68
DDX55-209	ENST00000542286	NDUFV3	P56181	108 aa	Known RBP	10.83	□□□□□ -0.68
DDX55-209	ENST00000542286	FN1	P02751	2386 aa	Known RBP	10.83	□□□□□ -0.68
DDX55-209	ENST00000542286	TRAV4	A0A0B4J268	109 aa		10.83	□□□□□ -0.68
DDX55-209	ENST00000542286	GCN1	Q92616	2671 aa	Known RBP	10.83	□□□□□ -0.68
DDX55-209	ENST00000542286	IGHV3-64	A0A075B6Q5	118 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	GAGE12J	A6NER3	117 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286		C9JAW5	83 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	SNCG	O76070	127 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	GAGE7	O76087	117 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	GAGE12F	P0CL80	117 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	GAGE12G	P0CL81	117 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	GAGE12I	P0CL82	117 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	GAGE4	Q13068	117 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	PRO1854	Q9UHT4	67 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	CCDC179	H3BU77	68 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	LGALS9	O00182	355 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	CRLF1	O75462	422 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	IGHV3-30	P01768	117 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	IGHV3-30-5	P0DP03	117 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	RNASE13	Q5GAN3	156 aa	Known RBP	10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	CEMP1	Q6PRD7	247 aa	Predicted RBP	10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	SHISA2	Q6UWI4	295 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	POM121L12	Q8N7R1	296 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	VWF	P04275	2813 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	IGLV4-69	A0A075B6H9	119 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	IGIP	A6NJ69	53 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	RAX2	Q96IS3	184 aa		10.82	□□□□□ -0.68
DDX55-209	ENST00000542286	TTC32	Q5I0X7	151 aa		10.81	□□□□□ -0.68
DDX55-209	ENST00000542286	TRPT1	Q86TN4	253 aa	Known RBP	10.81	□□□□□ -0.68
DDX55-209	ENST00000542286	IGHV3OR16-12	A0A075B7B8	117 aa		10.81	□□□□□ -0.68
DDX55-209	ENST00000542286	TMEM89	A2RUT3	159 aa		10.81	□□□□□ -0.68
DDX55-209	ENST00000542286		Q6ZSN1	163 aa		10.81	□□□□□ -0.68
DDX55-209	ENST00000542286		Q6ZSV7	163 aa		10.81	□□□□□ -0.68
DDX55-209	ENST00000542286	ZNRF2	Q8NHG8	242 aa		10.81	□□□□□ -0.68
DDX55-209	ENST00000542286	ESM1	Q9NQ30	184 aa		10.81	□□□□□ -0.68
DDX55-209	ENST00000542286	VCY	O14598	125 aa		10.8	□□□□□ -0.68
DDX55-209	ENST00000542286	HERV-K104	P63124	156 aa		10.8	□□□□□ -0.68
DDX55-209	ENST00000542286		H3BMM0	161 aa		10.8	□□□□□ -0.68
DDX55-209	ENST00000542286	TSPEAR-AS2	P59090	65 aa		10.8	□□□□□ -0.68
DDX55-209	ENST00000542286	SLC25A29	Q8N8R3	303 aa		10.8	□□□□□ -0.68
DDX55-209	ENST00000542286	HIVEP2	P31629	2446 aa		10.8	□□□□□ -0.68
DDX55-209	ENST00000542286	IFITM1	P13164	125 aa		10.79	□□□□□ -0.68
DDX55-209	ENST00000542286	HERVK_113	P61574	105 aa		10.79	□□□□□ -0.68
DDX55-209	ENST00000542286	TMEM170B	Q5T4T1	132 aa		10.79	□□□□□ -0.68
DDX55-209	ENST00000542286	SMIM20	Q8N5G0	67 aa		10.79	□□□□□ -0.68
DDX55-209	ENST00000542286	DYNLRB2	Q8TF09	96 aa		10.79	□□□□□ -0.68
DDX55-209	ENST00000542286	MAP6D1	Q9H9H5	199 aa		10.78	□□□□□ -0.68
DDX55-209	ENST00000542286	DNAJC9-AS1	A6NH13	148 aa		10.78	□□□□□ -0.68
DDX55-209	ENST00000542286		H7C2G1	150 aa		10.78	□□□□□ -0.68
DDX55-209	ENST00000542286	RNF152	Q8N8N0	203 aa		10.78	□□□□□ -0.68
DDX55-209	ENST00000542286	NTN5	Q8WTR8	489 aa	Predicted RBP	10.78	□□□□□ -0.68
DDX55-209	ENST00000542286	XCL2	Q9UBD3	114 aa		10.78	□□□□□ -0.68
DDX55-209	ENST00000542286	IGHV3-38	A0A0C4DH36	116 aa		10.77	□□□□□ -0.68
DDX55-209	ENST00000542286	TRBV27	A0A0K0K1C4	114 aa		10.77	□□□□□ -0.68
DDX55-209	ENST00000542286	RPL32	P62910	135 aa	Known RBP	10.77	□□□□□ -0.68
DDX55-209	ENST00000542286	ODF3	Q96PU9	254 aa		10.77	□□□□□ -0.69
DDX55-209	ENST00000542286	FAM110A	Q9BQ89	295 aa		10.77	□□□□□ -0.69
DDX55-209	ENST00000542286	CD28	P10747	220 aa		10.77	□□□□□ -0.69
DDX55-209	ENST00000542286		A4D1N5	150 aa		10.76	□□□□□ -0.69
DDX55-209	ENST00000542286	PPP1R17	O96001	155 aa		10.76	□□□□□ -0.69
DDX55-209	ENST00000542286	PMVK	Q15126	192 aa		10.76	□□□□□ -0.69
DDX55-209	ENST00000542286	PAPPA-AS1	Q5QFB9	102 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms