RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 PGPEP1Q9NXJ5 209 aa12.32□□□□□ -0.44
USP28-208ENST00000540438 TNFRSF18Q9Y5U5 241 aa12.32□□□□□ -0.44
USP28-208ENST00000540438 TRGV1A0A0A0MS02 117 aa12.31□□□□□ -0.44
USP28-208ENST00000540438 E9PLD3 99 aa12.31□□□□□ -0.44
USP28-208ENST00000540438 TRBV7-3A0A075B6L6 115 aa12.31□□□□□ -0.44
USP28-208ENST00000540438 TRBV7-9A0A0J9YWB2 115 aa12.31□□□□□ -0.44
USP28-208ENST00000540438 HIGD1BQ9P298 99 aa12.31□□□□□ -0.44
USP28-208ENST00000540438 TRPT1Q86TN4 253 aaKnown RBP12.3□□□□□ -0.44
USP28-208ENST00000540438 TM2D2Q9BX73 214 aa12.3□□□□□ -0.44
USP28-208ENST00000540438 VCX2Q9H322 139 aa12.3□□□□□ -0.44
USP28-208ENST00000540438 PEMTQ9UBM1 199 aa12.3□□□□□ -0.44
USP28-208ENST00000540438 HIVEP1P15822 2718 aa12.3□□□□□ -0.44
USP28-208ENST00000540438 TRAV2A0A0B4J234 112 aa12.29□□□□□ -0.44
USP28-208ENST00000540438 CCL24O00175 119 aa12.29□□□□□ -0.44
USP28-208ENST00000540438 PPP1R17O96001 155 aa12.29□□□□□ -0.44
USP28-208ENST00000540438 TRGV11A0A075B6L2 103 aa12.29□□□□□ -0.44
USP28-208ENST00000540438 I3L3M4 83 aa12.29□□□□□ -0.44
USP28-208ENST00000540438 C20orf203Q8NBC4 194 aa12.29□□□□□ -0.44
USP28-208ENST00000540438 CBY1Q9Y3M2 126 aa12.29□□□□□ -0.44
USP28-208ENST00000540438 STHQ8IWL8 128 aa12.29□□□□□ -0.44
USP28-208ENST00000540438 C4orf3Q8WVX3 66 aa12.29□□□□□ -0.44
USP28-208ENST00000540438 TMEM89A2RUT3 159 aa12.28□□□□□ -0.44
USP28-208ENST00000540438 TEX48A0A1B0GUV7 120 aa12.28□□□□□ -0.44
USP28-208ENST00000540438 ETDBQ3ZM63 59 aa12.28□□□□□ -0.44
USP28-208ENST00000540438 IGLV4-3A0A075B6K6 122 aa12.27□□□□□ -0.44
USP28-208ENST00000540438 CFAP126Q5VTH2 177 aa12.27□□□□□ -0.44
USP28-208ENST00000540438 DAND5Q8N907 189 aa12.27□□□□□ -0.44
USP28-208ENST00000540438 Q6ZTI0 123 aa12.27□□□□□ -0.45
USP28-208ENST00000540438 POM121L12Q8N7R1 296 aa12.27□□□□□ -0.45
USP28-208ENST00000540438 ZNF418Q8TF45 676 aaPredicted RBP12.27□□□□□ -0.45
USP28-208ENST00000540438 ZNF625Q96I27 306 aaPredicted RBP12.27□□□□□ -0.45
USP28-208ENST00000540438 IGKV3OR2-268A0A0C4DH90 116 aa12.27□□□□□ -0.45
USP28-208ENST00000540438 J3QQQ9 107 aa12.27□□□□□ -0.45
USP28-208ENST00000540438 PRSS2P07478 247 aa12.26□□□□□ -0.45
USP28-208ENST00000540438 LGALS3P17931 250 aaKnown RBP12.26□□□□□ -0.45
USP28-208ENST00000540438 LINC00467Q9BRT7 94 aa12.26□□□□□ -0.45
USP28-208ENST00000540438 NSD1Q96L73 2696 aaPredicted RBP12.26□□□□□ -0.45
USP28-208ENST00000540438 SPINK8P0C7L1 97 aa12.26□□□□□ -0.45
USP28-208ENST00000540438 INSL3P51460 131 aa12.26□□□□□ -0.45
USP28-208ENST00000540438 A0A0J9YY99 117 aa12.25□□□□□ -0.45
USP28-208ENST00000540438 M0R2P5 195 aa12.25□□□□□ -0.45
USP28-208ENST00000540438 SAMD13Q5VXD3 122 aa12.25□□□□□ -0.45
USP28-208ENST00000540438 PTH2Q96A98 100 aa12.25□□□□□ -0.45
USP28-208ENST00000540438 PSMB2P49721 201 aa12.24□□□□□ -0.45
USP28-208ENST00000540438 Q6ZUT4 128 aa12.24□□□□□ -0.45
USP28-208ENST00000540438 LINC01006Q8NI28 216 aa12.24□□□□□ -0.45
USP28-208ENST00000540438 NOP10Q9NPE3 64 aaKnown RBP12.24□□□□□ -0.45
USP28-208ENST00000540438 ZNF22P17026 224 aaPredicted RBP12.24□□□□□ -0.45
USP28-208ENST00000540438 HERVK_113P61574 105 aa12.24□□□□□ -0.45
USP28-208ENST00000540438 C1orf158Q8N1D5 194 aa12.24□□□□□ -0.45
USP28-208ENST00000540438 RNF152Q8N8N0 203 aa12.24□□□□□ -0.45
USP28-208ENST00000540438 LOC100131303A0A0U1RQF7 123 aa12.23□□□□□ -0.45
USP28-208ENST00000540438 FAM104AQ969W3 186 aa12.23□□□□□ -0.45
USP28-208ENST00000540438 ODF3Q96PU9 254 aa12.23□□□□□ -0.45
USP28-208ENST00000540438 C11orf72Q8NBR9 251 aa12.23□□□□□ -0.45
USP28-208ENST00000540438 TIMM17AQ99595 171 aa12.23□□□□□ -0.45
USP28-208ENST00000540438 TRBV6-5A0A0K0K1A5 114 aa12.22□□□□□ -0.45
USP28-208ENST00000540438 ZNF415Q09FC8 603 aa12.22□□□□□ -0.45
USP28-208ENST00000540438 GAGE12JA6NER3 117 aa12.22□□□□□ -0.45
USP28-208ENST00000540438 INSP01308 110 aa12.22□□□□□ -0.45
USP28-208ENST00000540438 GAGE4Q13068 117 aa12.22□□□□□ -0.45
USP28-208ENST00000540438 GAGE5Q13069 117 aa12.22□□□□□ -0.45
USP28-208ENST00000540438 RRN3P1Q2M238 152 aa12.22□□□□□ -0.45
USP28-208ENST00000540438 GAGE13Q4V321 117 aa12.22□□□□□ -0.45
USP28-208ENST00000540438 TMEM141Q96I45 108 aa12.22□□□□□ -0.45
USP28-208ENST00000540438 LINC00694P0DN24 101 aa12.21□□□□□ -0.45
USP28-208ENST00000540438 K7ERU9 68 aa12.21□□□□□ -0.45
USP28-208ENST00000540438 SPATA3Q8NHX4 192 aa12.21□□□□□ -0.45
USP28-208ENST00000540438 RHODO00212 210 aa12.21□□□□□ -0.46
USP28-208ENST00000540438 GAGE7O76087 117 aa12.21□□□□□ -0.46
USP28-208ENST00000540438 GAGE12FP0CL80 117 aa12.21□□□□□ -0.46
USP28-208ENST00000540438 GAGE12GP0CL81 117 aa12.21□□□□□ -0.46
USP28-208ENST00000540438 GAGE12IP0CL82 117 aa12.21□□□□□ -0.46
USP28-208ENST00000540438 Q8N2B8 174 aa12.21□□□□□ -0.46
USP28-208ENST00000540438 TRAV13-1A0A0B4J241 112 aa12.2□□□□□ -0.46
USP28-208ENST00000540438 TSPAN13O95857 204 aa12.19□□□□□ -0.46
USP28-208ENST00000540438 DGAT2L7PQ6IED9 249 aa12.19□□□□□ -0.46
USP28-208ENST00000540438 C10orf126Q8N4M7 172 aa12.19□□□□□ -0.46
USP28-208ENST00000540438 A4D1N5 150 aa12.19□□□□□ -0.46
USP28-208ENST00000540438 KRTAP1-1Q07627 177 aa12.19□□□□□ -0.46
USP28-208ENST00000540438 AMELXQ99217 191 aa12.19□□□□□ -0.46
USP28-208ENST00000540438 EIF4EBP3O60516 100 aaPredicted RBP12.19□□□□□ -0.46
USP28-208ENST00000540438 MUSTN1Q8IVN3 82 aa12.19□□□□□ -0.46
USP28-208ENST00000540438 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.19□□□□□ -0.46
USP28-208ENST00000540438 KMT2BQ9UMN6 2715 aaPredicted RBP12.18□□□□□ -0.46
USP28-208ENST00000540438 CFC1BP0CG36 223 aa12.18□□□□□ -0.46
USP28-208ENST00000540438 CFC1P0CG37 223 aa12.18□□□□□ -0.46
USP28-208ENST00000540438 SCGB1C2P0DMR2 95 aa12.18□□□□□ -0.46
USP28-208ENST00000540438 IGHV3-30-3P0DP02 117 aa12.18□□□□□ -0.46
USP28-208ENST00000540438 CHCHD7Q9BUK0 85 aa12.18□□□□□ -0.46
USP28-208ENST00000540438 TMEM223A0PJW6 202 aa12.18□□□□□ -0.46
USP28-208ENST00000540438 STAB1Q9NY15 2570 aa12.17□□□□□ -0.46
USP28-208ENST00000540438 PKD1L1Q8TDX9 2849 aa12.17□□□□□ -0.46
USP28-208ENST00000540438 A0A1B0GWB2 263 aa12.17□□□□□ -0.46
USP28-208ENST00000540438 A8MWV9 139 aa12.17□□□□□ -0.46
USP28-208ENST00000540438 IGHV3-30P01768 117 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 IGHV3-30-5P0DP03 117 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 COX6A2Q02221 97 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 LRRC75A-AS1Q8N1F1 130 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 OR5A1Q8NGJ0 315 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms