RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 Q5VSD8 79 aa7.59□□□□□ -1.19
RTN3-209ENST00000538995 GFRA4Q9GZZ7 299 aa7.59□□□□□ -1.19
RTN3-209ENST00000538995 HERC1Q15751 4861 aa7.59□□□□□ -1.19
RTN3-209ENST00000538995 ZNF727A8MUV8 499 aa7.58□□□□□ -1.2
RTN3-209ENST00000538995 SRP19P09132 144 aaKnown RBP7.58□□□□□ -1.2
RTN3-209ENST00000538995 LINC00269Q8N2A0 174 aa7.58□□□□□ -1.2
RTN3-209ENST00000538995 GATD1Q8NB37 220 aa7.58□□□□□ -1.2
RTN3-209ENST00000538995 TSKUQ8WUA8 353 aa7.58□□□□□ -1.2
RTN3-209ENST00000538995 BORCS7Q96B45 105 aa7.58□□□□□ -1.2
RTN3-209ENST00000538995 OSTCQ9NRP0 149 aa7.58□□□□□ -1.2
RTN3-209ENST00000538995 NCR2O95944 276 aa7.57□□□□□ -1.2
RTN3-209ENST00000538995 AMTP48728 403 aa7.57□□□□□ -1.2
RTN3-209ENST00000538995 FAM74A3Q4VXF1 159 aa7.57□□□□□ -1.2
RTN3-209ENST00000538995 LCE2CQ5TA81 110 aa7.57□□□□□ -1.2
RTN3-209ENST00000538995 FAM30AQ9NZY2 134 aa7.57□□□□□ -1.2
RTN3-209ENST00000538995 TRAV8-4A0A0B4J246 113 aa7.56□□□□□ -1.2
RTN3-209ENST00000538995 TRAV26-2A0A0B4J265 109 aa7.56□□□□□ -1.2
RTN3-209ENST00000538995 A0A1B0GUT8 65 aa7.56□□□□□ -1.2
RTN3-209ENST00000538995 HIGD1CA8MV81 97 aa7.56□□□□□ -1.2
RTN3-209ENST00000538995 FAM229AH3BQW9 127 aa7.56□□□□□ -1.2
RTN3-209ENST00000538995 UBE2L6O14933 153 aa7.56□□□□□ -1.2
RTN3-209ENST00000538995 ATP6V1G1O75348 118 aa7.56□□□□□ -1.2
RTN3-209ENST00000538995 HLA-DQA1P01909 254 aa7.56□□□□□ -1.2
RTN3-209ENST00000538995 REG3AQ06141 175 aa7.56□□□□□ -1.2
RTN3-209ENST00000538995 C20orf203Q8NBC4 194 aa7.56□□□□□ -1.2
RTN3-209ENST00000538995 TRBV6-5A0A0K0K1A5 114 aa7.55□□□□□ -1.2
RTN3-209ENST00000538995 USP17L23D6RBM5 183 aa7.55□□□□□ -1.2
RTN3-209ENST00000538995 HAMPP81172 84 aa7.55□□□□□ -1.2
RTN3-209ENST00000538995 KRTAP26-1Q6PEX3 210 aa7.55□□□□□ -1.2
RTN3-209ENST00000538995 CLPSL2Q6UWE3 100 aa7.55□□□□□ -1.2
RTN3-209ENST00000538995 TMEM191AQ9H0A3 160 aa7.55□□□□□ -1.2
RTN3-209ENST00000538995 SMDT1Q9H4I9 107 aa7.55□□□□□ -1.2
RTN3-209ENST00000538995 SRRM2Q9UQ35 2752 aaKnown RBP7.54□□□□□ -1.2
RTN3-209ENST00000538995 IGLV4-60A0A075B6I1 120 aa7.54□□□□□ -1.2
RTN3-209ENST00000538995 SDHAF1A6NFY7 115 aa7.54□□□□□ -1.2
RTN3-209ENST00000538995 H7C423 109 aa7.54□□□□□ -1.2
RTN3-209ENST00000538995 SMR3BP02814 79 aaPredicted RBP7.54□□□□□ -1.2
RTN3-209ENST00000538995 TMEM241Q24JQ0 296 aa7.54□□□□□ -1.2
RTN3-209ENST00000538995 ISOC2Q96AB3 205 aa7.54□□□□□ -1.2
RTN3-209ENST00000538995 RPL39LQ96EH5 51 aaKnown RBP7.54□□□□□ -1.2
RTN3-209ENST00000538995 V9GYV3 84 aa7.54□□□□□ -1.2
RTN3-209ENST00000538995 APCSP02743 223 aa7.53□□□□□ -1.2
RTN3-209ENST00000538995 INAFM2P0DMQ5 153 aa7.53□□□□□ -1.2
RTN3-209ENST00000538995 PEA15Q15121 130 aa7.53□□□□□ -1.2
RTN3-209ENST00000538995 DGAT2L7PQ6IED9 249 aa7.53□□□□□ -1.2
RTN3-209ENST00000538995 CLRN3Q8NCR9 226 aa7.53□□□□□ -1.2
RTN3-209ENST00000538995 MRAP2Q96G30 205 aa7.53□□□□□ -1.2
RTN3-209ENST00000538995 NAT8Q9UHE5 227 aa7.53□□□□□ -1.2
RTN3-209ENST00000538995 I3L3M4 83 aa7.52□□□□□ -1.21
RTN3-209ENST00000538995 RPL23P62829 140 aaKnown RBP7.52□□□□□ -1.21
RTN3-209ENST00000538995 RIGQ13278 110 aa7.52□□□□□ -1.21
RTN3-209ENST00000538995 LINC01620Q4KN68 170 aa7.52□□□□□ -1.21
RTN3-209ENST00000538995 CHAC1Q9BUX1 264 aa7.52□□□□□ -1.21
RTN3-209ENST00000538995 MYCBP2O75592 4640 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 IGLV10-54A0A075B6I4 117 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 C9JQL5 133 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 PRSS1P07477 247 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 ZNF25P17030 456 aaPredicted RBP7.51□□□□□ -1.21
RTN3-209ENST00000538995 ADIRFQ15847 76 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 AMMECR1LQ6DCA0 310 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 SCXQ7RTU7 201 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 NUP35Q8NFH5 326 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 DEFB104AQ8WTQ1 72 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 RNF185Q96GF1 192 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 ST20Q9HBF5 79 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 NAT8BQ9UHF3 227 aa7.51□□□□□ -1.21
RTN3-209ENST00000538995 DMBT1Q9UGM3 2413 aaPredicted RBP7.5□□□□□ -1.21
RTN3-209ENST00000538995 PPP1R17O96001 155 aa7.5□□□□□ -1.21
RTN3-209ENST00000538995 PLA2G1BP04054 148 aaKnown RBP7.5□□□□□ -1.21
RTN3-209ENST00000538995 RAB4AP20338 218 aa7.5□□□□□ -1.21
RTN3-209ENST00000538995 PMCHP20382 165 aa7.5□□□□□ -1.21
RTN3-209ENST00000538995 TRBV27A0A0K0K1C4 114 aa7.49□□□□□ -1.21
RTN3-209ENST00000538995 A0A1B0GW15 77 aa7.49□□□□□ -1.21
RTN3-209ENST00000538995 SMIM27A0A1W2PRY6 76 aa7.49□□□□□ -1.21
RTN3-209ENST00000538995 FGF6P10767 208 aa7.49□□□□□ -1.21
RTN3-209ENST00000538995 CNBPP62633 177 aaKnown RBP7.49□□□□□ -1.21
RTN3-209ENST00000538995 SRSF3P84103 164 aaKnown RBP7.49□□□□□ -1.21
RTN3-209ENST00000538995 AMN1Q8IY45 258 aa7.49□□□□□ -1.21
RTN3-209ENST00000538995 LINC00528Q8N1L1 170 aa7.49□□□□□ -1.21
RTN3-209ENST00000538995 C9orf163Q8N9P6 203 aa7.49□□□□□ -1.21
RTN3-209ENST00000538995 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.48□□□□□ -1.21
RTN3-209ENST00000538995 IGKV2-29A2NJV5 120 aaPredicted RBP7.48□□□□□ -1.21
RTN3-209ENST00000538995 GAS8-AS1O95177 125 aa7.48□□□□□ -1.21
RTN3-209ENST00000538995 TSHBP01222 138 aa7.48□□□□□ -1.21
RTN3-209ENST00000538995 ESDP10768 282 aa7.48□□□□□ -1.21
RTN3-209ENST00000538995 S100A1P23297 94 aa7.48□□□□□ -1.21
RTN3-209ENST00000538995 RPS10P46783 165 aaKnown RBP7.48□□□□□ -1.21
RTN3-209ENST00000538995 SMCPP49901 116 aaPredicted RBP7.48□□□□□ -1.21
RTN3-209ENST00000538995 POLR2KP53803 58 aaKnown RBP7.48□□□□□ -1.21
RTN3-209ENST00000538995 RNASEKQ6P5S7 137 aaKnown RBP7.48□□□□□ -1.21
RTN3-209ENST00000538995 BTF3L4Q96K17 158 aa7.48□□□□□ -1.21
RTN3-209ENST00000538995 hDV102S1A0JD36 115 aa7.47□□□□□ -1.21
RTN3-209ENST00000538995 CFAP161Q6P656 301 aa7.47□□□□□ -1.21
RTN3-209ENST00000538995 MRPL52Q86TS9 123 aaKnown RBP7.47□□□□□ -1.21
RTN3-209ENST00000538995 CIRBP-AS1Q8TBR5 109 aa7.47□□□□□ -1.21
RTN3-209ENST00000538995 TMEM101Q96IK0 257 aa7.47□□□□□ -1.21
RTN3-209ENST00000538995 AP5S1Q9NUS5 200 aa7.47□□□□□ -1.21
RTN3-209ENST00000538995 TMEM242Q9NWH2 141 aa7.47□□□□□ -1.21
RTN3-209ENST00000538995 FLG2Q5D862 2391 aaPredicted RBP7.47□□□□□ -1.21
RTN3-209ENST00000538995 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms