RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 MAP1LC3CQ9BXW4 147 aa14.79□□□□□ -0.04
VPS28-208ENST00000527797 NBEAL1Q6ZS30 2694 aa14.79□□□□□ -0.04
VPS28-208ENST00000527797 SMIM6P0DI80 62 aa14.78□□□□□ -0.04
VPS28-208ENST00000527797 LINC01549A6NIU2 74 aa14.77□□□□□ -0.04
VPS28-208ENST00000527797 F5H768 121 aa14.77□□□□□ -0.04
VPS28-208ENST00000527797 PAX4O43316 350 aa14.77□□□□□ -0.04
VPS28-208ENST00000527797 SCGB1D1O95968 90 aa14.77□□□□□ -0.04
VPS28-208ENST00000527797 IFI27L1Q96BM0 104 aa14.77□□□□□ -0.04
VPS28-208ENST00000527797 CYSLTR1Q9Y271 337 aa14.77□□□□□ -0.04
VPS28-208ENST00000527797 ATP5LO75964 103 aa14.77□□□□□ -0.05
VPS28-208ENST00000527797 HTN3P15516 51 aa14.77□□□□□ -0.05
VPS28-208ENST00000527797 SYS1-DBNDD2H3BUS1 97 aa14.76□□□□□ -0.05
VPS28-208ENST00000527797 GYPEP15421 78 aa14.76□□□□□ -0.05
VPS28-208ENST00000527797 SCGB3A1Q96QR1 104 aa14.76□□□□□ -0.05
VPS28-208ENST00000527797 B9D2Q9BPU9 175 aa14.76□□□□□ -0.05
VPS28-208ENST00000527797 C11orf45Q8TAV5 145 aa14.75□□□□□ -0.05
VPS28-208ENST00000527797 C20orf203Q8NBC4 194 aa14.74□□□□□ -0.05
VPS28-208ENST00000527797 A0A0J9YY99 117 aa14.74□□□□□ -0.05
VPS28-208ENST00000527797 LINC00694P0DN24 101 aa14.74□□□□□ -0.05
VPS28-208ENST00000527797 PET117Q6UWS5 81 aa14.74□□□□□ -0.05
VPS28-208ENST00000527797 LINC00518Q8N0U6 118 aa14.74□□□□□ -0.05
VPS28-208ENST00000527797 VSIG2Q96IQ7 327 aa14.74□□□□□ -0.05
VPS28-208ENST00000527797 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.73□□□□□ -0.05
VPS28-208ENST00000527797 RPL39P62891 51 aaKnown RBP14.73□□□□□ -0.05
VPS28-208ENST00000527797 CHCHD7Q9BUK0 85 aa14.73□□□□□ -0.05
VPS28-208ENST00000527797 TRAV26-1A0A087WT03 109 aa14.72□□□□□ -0.05
VPS28-208ENST00000527797 H0Y8G0 127 aa14.72□□□□□ -0.05
VPS28-208ENST00000527797 Q6ZTC4 211 aa14.72□□□□□ -0.05
VPS28-208ENST00000527797 ERASQ7Z444 233 aa14.72□□□□□ -0.05
VPS28-208ENST00000527797 GTSF1LQ9H1H1 148 aa14.72□□□□□ -0.05
VPS28-208ENST00000527797 SPATA12Q7Z6I5 190 aa14.71□□□□□ -0.05
VPS28-208ENST00000527797 Q8N976 141 aa14.71□□□□□ -0.05
VPS28-208ENST00000527797 C12orf57Q99622 126 aa14.71□□□□□ -0.05
VPS28-208ENST00000527797 C20orf202A1L168 122 aa14.7□□□□□ -0.06
VPS28-208ENST00000527797 PRSS1P07477 247 aa14.7□□□□□ -0.06
VPS28-208ENST00000527797 NANOS2P60321 138 aaKnown RBP14.7□□□□□ -0.06
VPS28-208ENST00000527797 ATP6V0E2Q8NHE4 81 aa14.7□□□□□ -0.06
VPS28-208ENST00000527797 Q6ZN92 141 aa14.7□□□□□ -0.06
VPS28-208ENST00000527797 NTM-AS1Q6ZSK4 140 aa14.7□□□□□ -0.06
VPS28-208ENST00000527797 IGIPA6NJ69 53 aa14.69□□□□□ -0.06
VPS28-208ENST00000527797 TMEM97Q5BJF2 176 aa14.69□□□□□ -0.06
VPS28-208ENST00000527797 TMEM141Q96I45 108 aa14.69□□□□□ -0.06
VPS28-208ENST00000527797 TIMM17AQ99595 171 aa14.69□□□□□ -0.06
VPS28-208ENST00000527797 DEFA6Q01524 100 aa14.67□□□□□ -0.06
VPS28-208ENST00000527797 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.66□□□□□ -0.06
VPS28-208ENST00000527797 IGKV2-29A2NJV5 120 aaPredicted RBP14.66□□□□□ -0.06
VPS28-208ENST00000527797 MRPL23Q16540 153 aaKnown RBP14.66□□□□□ -0.06
VPS28-208ENST00000527797 LINC01545Q5VT33 79 aa14.66□□□□□ -0.06
VPS28-208ENST00000527797 CDPF1Q6NVV7 123 aa14.66□□□□□ -0.06
VPS28-208ENST00000527797 ICOSQ9Y6W8 199 aa14.66□□□□□ -0.06
VPS28-208ENST00000527797 TRBV25-1A0A075B6N4 114 aa14.65□□□□□ -0.06
VPS28-208ENST00000527797 DEFB131BA0A096LNP1 70 aa14.65□□□□□ -0.06
VPS28-208ENST00000527797 NHLRC4P0CG21 123 aaPredicted RBP14.65□□□□□ -0.06
VPS28-208ENST00000527797 LGALS9CQ6DKI2 356 aa14.65□□□□□ -0.06
VPS28-208ENST00000527797 TMEM243Q9BU79 118 aa14.65□□□□□ -0.06
VPS28-208ENST00000527797 PYGO1Q9Y3Y4 419 aa14.65□□□□□ -0.06
VPS28-208ENST00000527797 A0A096LPF7 62 aa14.64□□□□□ -0.07
VPS28-208ENST00000527797 TRBV6-8A0A0A6YYG3 113 aa14.64□□□□□ -0.07
VPS28-208ENST00000527797 H3BNG1 76 aa14.64□□□□□ -0.07
VPS28-208ENST00000527797 SH2D6Q7Z4S9 175 aa14.64□□□□□ -0.07
VPS28-208ENST00000527797 BAALCQ8WXS3 180 aa14.64□□□□□ -0.07
VPS28-208ENST00000527797 SPANXA1Q9NS26 97 aa14.63□□□□□ -0.07
VPS28-208ENST00000527797 UBE2D4Q9Y2X8 147 aa14.63□□□□□ -0.07
VPS28-208ENST00000527797 TRAV12-1A0A0B4J245 112 aa14.63□□□□□ -0.07
VPS28-208ENST00000527797 S100A12P80511 92 aa14.63□□□□□ -0.07
VPS28-208ENST00000527797 PMCHL2Q9BQD1 86 aa14.63□□□□□ -0.07
VPS28-208ENST00000527797 SMAGPQ0VAQ4 97 aa14.62□□□□□ -0.07
VPS28-208ENST00000527797 TEX43Q6ZNM6 134 aa14.62□□□□□ -0.07
VPS28-208ENST00000527797 A0A087WX48 190 aa14.61□□□□□ -0.07
VPS28-208ENST00000527797 TRAV10A0A0B4J240 114 aa14.61□□□□□ -0.07
VPS28-208ENST00000527797 H7C423 109 aa14.61□□□□□ -0.07
VPS28-208ENST00000527797 UBE2L6O14933 153 aa14.61□□□□□ -0.07
VPS28-208ENST00000527797 NPSP0C0P6 89 aa14.61□□□□□ -0.07
VPS28-208ENST00000527797 ODF1Q14990 250 aa14.61□□□□□ -0.07
VPS28-208ENST00000527797 PAPPA-AS1Q5QFB9 102 aa14.61□□□□□ -0.07
VPS28-208ENST00000527797 TIMM21Q9BVV7 248 aa14.61□□□□□ -0.07
VPS28-208ENST00000527797 PMVKQ15126 192 aa14.6□□□□□ -0.07
VPS28-208ENST00000527797 CEMP1Q6PRD7 247 aaPredicted RBP14.6□□□□□ -0.07
VPS28-208ENST00000527797 ATOH7Q8N100 152 aa14.6□□□□□ -0.07
VPS28-208ENST00000527797 OPRPNQ99935 248 aaPredicted RBP14.6□□□□□ -0.07
VPS28-208ENST00000527797 DNHD1Q96M86 4753 aa14.59□□□□□ -0.07
VPS28-208ENST00000527797 IGLV4-3A0A075B6K6 122 aa14.59□□□□□ -0.07
VPS28-208ENST00000527797 FGF6P10767 208 aa14.59□□□□□ -0.07
VPS28-208ENST00000527797 DGAT2L7PQ6IED9 249 aa14.59□□□□□ -0.07
VPS28-208ENST00000527797 PRSS29PA6NIE9 313 aa14.59□□□□□ -0.07
VPS28-208ENST00000527797 MRPL52Q86TS9 123 aaKnown RBP14.59□□□□□ -0.07
VPS28-208ENST00000527797 CHCHD5Q9BSY4 110 aa14.59□□□□□ -0.07
VPS28-208ENST00000527797 VCX2Q9H322 139 aa14.59□□□□□ -0.07
VPS28-208ENST00000527797 TENM3Q9P273 2699 aa14.59□□□□□ -0.07
VPS28-208ENST00000527797 AMMECR1LQ6DCA0 310 aa14.58□□□□□ -0.08
VPS28-208ENST00000527797 CST9LQ9H4G1 147 aa14.58□□□□□ -0.08
VPS28-208ENST00000527797 CHTOPQ9Y3Y2 248 aaKnown RBP14.58□□□□□ -0.08
VPS28-208ENST00000527797 CSDC2Q9Y534 153 aaKnown RBP14.57□□□□□ -0.08
VPS28-208ENST00000527797 FAM104AQ969W3 186 aa14.56□□□□□ -0.08
VPS28-208ENST00000527797 VAMP8Q9BV40 100 aa14.56□□□□□ -0.08
VPS28-208ENST00000527797 MRPL35Q9NZE8 188 aaKnown RBP14.56□□□□□ -0.08
VPS28-208ENST00000527797 F8VRH5 84 aa14.55□□□□□ -0.08
VPS28-208ENST00000527797 MRPS36P82909 103 aaKnown RBP14.55□□□□□ -0.08
VPS28-208ENST00000527797 GAGE6Q13070 117 aa14.55□□□□□ -0.08
VPS28-208ENST00000527797 ZC2HC1BQ5TFG8 222 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms