RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TMEM241Q24JQ0 296 aa13.57□□□□□ -0.24
VPS28-206ENST00000526734 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.56□□□□□ -0.24
VPS28-206ENST00000526734 HIGD1CA8MV81 97 aa13.56□□□□□ -0.24
VPS28-206ENST00000526734 UBE2L6O14933 153 aa13.56□□□□□ -0.24
VPS28-206ENST00000526734 NCR2O95944 276 aa13.56□□□□□ -0.24
VPS28-206ENST00000526734 TRAV26-2A0A0B4J265 109 aa13.55□□□□□ -0.24
VPS28-206ENST00000526734 LINC00269Q8N2A0 174 aa13.55□□□□□ -0.24
VPS28-206ENST00000526734 TRAV8-4A0A0B4J246 113 aa13.54□□□□□ -0.24
VPS28-206ENST00000526734 ISOC2Q96AB3 205 aa13.54□□□□□ -0.24
VPS28-206ENST00000526734 TMEM191AQ9H0A3 160 aa13.54□□□□□ -0.24
VPS28-206ENST00000526734 NAT8Q9UHE5 227 aa13.54□□□□□ -0.24
VPS28-206ENST00000526734 REG3AQ06141 175 aa13.53□□□□□ -0.24
VPS28-206ENST00000526734 V9GYV3 84 aa13.53□□□□□ -0.24
VPS28-206ENST00000526734 TRBV6-5A0A0K0K1A5 114 aa13.52□□□□□ -0.25
VPS28-206ENST00000526734 HLA-DQA1P01909 254 aa13.52□□□□□ -0.25
VPS28-206ENST00000526734 RPL23P62829 140 aaKnown RBP13.52□□□□□ -0.25
VPS28-206ENST00000526734 Q6ZSA8 131 aa13.52□□□□□ -0.25
VPS28-206ENST00000526734 C20orf203Q8NBC4 194 aa13.52□□□□□ -0.25
VPS28-206ENST00000526734 SDHAF1A6NFY7 115 aa13.51□□□□□ -0.25
VPS28-206ENST00000526734 H7C423 109 aa13.51□□□□□ -0.25
VPS28-206ENST00000526734 RIGQ13278 110 aa13.51□□□□□ -0.25
VPS28-206ENST00000526734 CLPSL2Q6UWE3 100 aa13.51□□□□□ -0.25
VPS28-206ENST00000526734 RPL39LQ96EH5 51 aaKnown RBP13.51□□□□□ -0.25
VPS28-206ENST00000526734 MRAP2Q96G30 205 aa13.51□□□□□ -0.25
VPS28-206ENST00000526734 APCSP02743 223 aa13.5□□□□□ -0.25
VPS28-206ENST00000526734 ADIRFQ15847 76 aa13.5□□□□□ -0.25
VPS28-206ENST00000526734 NAT8BQ9UHF3 227 aa13.5□□□□□ -0.25
VPS28-206ENST00000526734 USP17L23D6RBM5 183 aa13.49□□□□□ -0.25
VPS28-206ENST00000526734 Q5VSD8 79 aa13.49□□□□□ -0.25
VPS28-206ENST00000526734 IGLV4-60A0A075B6I1 120 aa13.48□□□□□ -0.25
VPS28-206ENST00000526734 C9JQL5 133 aa13.48□□□□□ -0.25
VPS28-206ENST00000526734 FAM229AH3BQW9 127 aa13.48□□□□□ -0.25
VPS28-206ENST00000526734 I3L3M4 83 aa13.48□□□□□ -0.25
VPS28-206ENST00000526734 KRTAP26-1Q6PEX3 210 aa13.48□□□□□ -0.25
VPS28-206ENST00000526734 NUP35Q8NFH5 326 aa13.48□□□□□ -0.25
VPS28-206ENST00000526734 ST20Q9HBF5 79 aa13.48□□□□□ -0.25
VPS28-206ENST00000526734 PPP1R17O96001 155 aa13.47□□□□□ -0.25
VPS28-206ENST00000526734 AMMECR1LQ6DCA0 310 aa13.47□□□□□ -0.25
VPS28-206ENST00000526734 CLRN3Q8NCR9 226 aa13.47□□□□□ -0.25
VPS28-206ENST00000526734 FAM30AQ9NZY2 134 aa13.47□□□□□ -0.25
VPS28-206ENST00000526734 A0A1B0GW15 77 aa13.46□□□□□ -0.25
VPS28-206ENST00000526734 RAB4AP20338 218 aa13.46□□□□□ -0.25
VPS28-206ENST00000526734 PMCHP20382 165 aa13.46□□□□□ -0.25
VPS28-206ENST00000526734 DGAT2L7PQ6IED9 249 aa13.46□□□□□ -0.25
VPS28-206ENST00000526734 SMIM27A0A1W2PRY6 76 aa13.45□□□□□ -0.26
VPS28-206ENST00000526734 ZNF25P17030 456 aaPredicted RBP13.45□□□□□ -0.26
VPS28-206ENST00000526734 SRSF3P84103 164 aaKnown RBP13.45□□□□□ -0.26
VPS28-206ENST00000526734 RNF185Q96GF1 192 aa13.45□□□□□ -0.26
VPS28-206ENST00000526734 AMN1Q8IY45 258 aa13.44□□□□□ -0.26
VPS28-206ENST00000526734 DEFB104AQ8WTQ1 72 aa13.44□□□□□ -0.26
VPS28-206ENST00000526734 IGLV10-54A0A075B6I4 117 aa13.43□□□□□ -0.26
VPS28-206ENST00000526734 TRBV27A0A0K0K1C4 114 aa13.43□□□□□ -0.26
VPS28-206ENST00000526734 SMR3BP02814 79 aaPredicted RBP13.43□□□□□ -0.26
VPS28-206ENST00000526734 HAMPP81172 84 aa13.43□□□□□ -0.26
VPS28-206ENST00000526734 S100A8P05109 93 aa13.42□□□□□ -0.26
VPS28-206ENST00000526734 PRSS1P07477 247 aa13.42□□□□□ -0.26
VPS28-206ENST00000526734 FGF6P10767 208 aa13.42□□□□□ -0.26
VPS28-206ENST00000526734 RAB14P61106 215 aa13.42□□□□□ -0.26
VPS28-206ENST00000526734 RNASEKQ6P5S7 137 aaKnown RBP13.42□□□□□ -0.26
VPS28-206ENST00000526734 BTF3L4Q96K17 158 aa13.42□□□□□ -0.26
VPS28-206ENST00000526734 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.41□□□□□ -0.26
VPS28-206ENST00000526734 IGKV2-29A2NJV5 120 aaPredicted RBP13.41□□□□□ -0.26
VPS28-206ENST00000526734 POLR2KP53803 58 aaKnown RBP13.41□□□□□ -0.26
VPS28-206ENST00000526734 LINC01620Q4KN68 170 aa13.41□□□□□ -0.26
VPS28-206ENST00000526734 TMEM101Q96IK0 257 aa13.41□□□□□ -0.26
VPS28-206ENST00000526734 PPP1R2P9O14990 202 aa13.4□□□□□ -0.26
VPS28-206ENST00000526734 TSHBP01222 138 aa13.4□□□□□ -0.26
VPS28-206ENST00000526734 INAFM2P0DMQ5 153 aa13.4□□□□□ -0.26
VPS28-206ENST00000526734 ESDP10768 282 aa13.4□□□□□ -0.26
VPS28-206ENST00000526734 LINC00862A6NCI5 91 aa13.39□□□□□ -0.27
VPS28-206ENST00000526734 VCYO14598 125 aa13.39□□□□□ -0.27
VPS28-206ENST00000526734 GAS8-AS1O95177 125 aa13.39□□□□□ -0.27
VPS28-206ENST00000526734 RPS10P46783 165 aaKnown RBP13.39□□□□□ -0.27
VPS28-206ENST00000526734 FAM104BQ5XKR9 115 aa13.39□□□□□ -0.27
VPS28-206ENST00000526734 CHAC1Q9BUX1 264 aa13.39□□□□□ -0.27
VPS28-206ENST00000526734 TMEM242Q9NWH2 141 aa13.39□□□□□ -0.27
VPS28-206ENST00000526734 SMAGPQ0VAQ4 97 aa13.38□□□□□ -0.27
VPS28-206ENST00000526734 CFAP161Q6P656 301 aa13.38□□□□□ -0.27
VPS28-206ENST00000526734 C9orf163Q8N9P6 203 aa13.38□□□□□ -0.27
VPS28-206ENST00000526734 AP5S1Q9NUS5 200 aa13.38□□□□□ -0.27
VPS28-206ENST00000526734 C7orf77A4D0Y5 90 aa13.37□□□□□ -0.27
VPS28-206ENST00000526734 PLA2G1BP04054 148 aaKnown RBP13.37□□□□□ -0.27
VPS28-206ENST00000526734 SUMO2P61956 95 aaKnown RBP13.37□□□□□ -0.27
VPS28-206ENST00000526734 CNBPP62633 177 aaKnown RBP13.37□□□□□ -0.27
VPS28-206ENST00000526734 SCXQ7RTU7 201 aa13.37□□□□□ -0.27
VPS28-206ENST00000526734 MRPL52Q86TS9 123 aaKnown RBP13.37□□□□□ -0.27
VPS28-206ENST00000526734 OR5A1Q8NGJ0 315 aa13.37□□□□□ -0.27
VPS28-206ENST00000526734 F8W036 122 aa13.36□□□□□ -0.27
VPS28-206ENST00000526734 FCER1GP30273 86 aa13.36□□□□□ -0.27
VPS28-206ENST00000526734 CAMPP49913 170 aa13.36□□□□□ -0.27
VPS28-206ENST00000526734 HBBP68871 147 aa13.36□□□□□ -0.27
VPS28-206ENST00000526734 PNRC1Q12796 327 aaPredicted RBP13.36□□□□□ -0.27
VPS28-206ENST00000526734 NRACQ8N912 160 aa13.36□□□□□ -0.27
VPS28-206ENST00000526734 KIR2DL4Q99706 377 aa13.36□□□□□ -0.27
VPS28-206ENST00000526734 DNAH8Q96JB1 4490 aa13.36□□□□□ -0.27
VPS28-206ENST00000526734 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.35□□□□□ -0.27
VPS28-206ENST00000526734 hDV102S1A0JD36 115 aa13.35□□□□□ -0.27
VPS28-206ENST00000526734 GAGE12HA6NDE8 117 aa13.35□□□□□ -0.27
VPS28-206ENST00000526734 TCAPO15273 167 aa13.35□□□□□ -0.27
VPS28-206ENST00000526734 C20orf78Q9BR46 151 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms