RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 FAM231BA6NCW3 169 aa13.75□□□□□ -0.21
VPS28-203ENST00000524521 AMTP48728 403 aa13.75□□□□□ -0.21
VPS28-203ENST00000524521 ISOC2Q96AB3 205 aa13.75□□□□□ -0.21
VPS28-203ENST00000524521 RPL23P62829 140 aaKnown RBP13.74□□□□□ -0.21
VPS28-203ENST00000524521 TMEM70Q9BUB7 260 aa13.74□□□□□ -0.21
VPS28-203ENST00000524521 PRR34Q9NV39 138 aa13.74□□□□□ -0.21
VPS28-203ENST00000524521 V9GYV3 84 aa13.74□□□□□ -0.21
VPS28-203ENST00000524521 UBE2L6O14933 153 aa13.73□□□□□ -0.21
VPS28-203ENST00000524521 HAMPP81172 84 aa13.73□□□□□ -0.21
VPS28-203ENST00000524521 ADIRFQ15847 76 aa13.73□□□□□ -0.21
VPS28-203ENST00000524521 NAT8Q9UHE5 227 aa13.73□□□□□ -0.21
VPS28-203ENST00000524521 PCLOQ9Y6V0 5065 aa13.73□□□□□ -0.21
VPS28-203ENST00000524521 HLA-DQA1P01909 254 aa13.72□□□□□ -0.21
VPS28-203ENST00000524521 C20orf203Q8NBC4 194 aa13.72□□□□□ -0.21
VPS28-203ENST00000524521 SMDT1Q9H4I9 107 aa13.72□□□□□ -0.21
VPS28-203ENST00000524521 IGLV4-60A0A075B6I1 120 aa13.71□□□□□ -0.21
VPS28-203ENST00000524521 A0A1B0GUV1 79 aa13.71□□□□□ -0.21
VPS28-203ENST00000524521 EPM2AB3EWF7 344 aa13.71□□□□□ -0.21
VPS28-203ENST00000524521 SMR3BP02814 79 aaPredicted RBP13.71□□□□□ -0.21
VPS28-203ENST00000524521 REG3AQ06141 175 aa13.71□□□□□ -0.21
VPS28-203ENST00000524521 TMEM191AQ9H0A3 160 aa13.71□□□□□ -0.21
VPS28-203ENST00000524521 FAM30AQ9NZY2 134 aa13.71□□□□□ -0.21
VPS28-203ENST00000524521 SDHAF1A6NFY7 115 aa13.7□□□□□ -0.22
VPS28-203ENST00000524521 LINC01620Q4KN68 170 aa13.7□□□□□ -0.22
VPS28-203ENST00000524521 C14orf177Q52M58 125 aa13.7□□□□□ -0.22
VPS28-203ENST00000524521 NUP35Q8NFH5 326 aa13.7□□□□□ -0.22
VPS28-203ENST00000524521 RIGQ13278 110 aa13.69□□□□□ -0.22
VPS28-203ENST00000524521 IGLV10-54A0A075B6I4 117 aa13.68□□□□□ -0.22
VPS28-203ENST00000524521 USP17L23D6RBM5 183 aa13.68□□□□□ -0.22
VPS28-203ENST00000524521 GAS8-AS1O95177 125 aa13.68□□□□□ -0.22
VPS28-203ENST00000524521 NCR2O95944 276 aa13.68□□□□□ -0.22
VPS28-203ENST00000524521 PMCHP20382 165 aa13.68□□□□□ -0.22
VPS28-203ENST00000524521 NAT8BQ9UHF3 227 aa13.68□□□□□ -0.22
VPS28-203ENST00000524521 TRBV6-5A0A0K0K1A5 114 aa13.67□□□□□ -0.22
VPS28-203ENST00000524521 RAB4AP20338 218 aa13.67□□□□□ -0.22
VPS28-203ENST00000524521 KRTAP26-1Q6PEX3 210 aa13.67□□□□□ -0.22
VPS28-203ENST00000524521 AMN1Q8IY45 258 aa13.67□□□□□ -0.22
VPS28-203ENST00000524521 RNF185Q96GF1 192 aa13.67□□□□□ -0.22
VPS28-203ENST00000524521 I3L3M4 83 aa13.66□□□□□ -0.22
VPS28-203ENST00000524521 APCSP02743 223 aa13.66□□□□□ -0.22
VPS28-203ENST00000524521 ST20Q9HBF5 79 aa13.66□□□□□ -0.22
VPS28-203ENST00000524521 TRAV8-4A0A0B4J246 113 aa13.65□□□□□ -0.22
VPS28-203ENST00000524521 AMMECR1LQ6DCA0 310 aa13.65□□□□□ -0.22
VPS28-203ENST00000524521 MRAP2Q96G30 205 aa13.65□□□□□ -0.22
VPS28-203ENST00000524521 ABCA13Q86UQ4 5058 aa13.65□□□□□ -0.22
VPS28-203ENST00000524521 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.64□□□□□ -0.23
VPS28-203ENST00000524521 IGKV2-29A2NJV5 120 aaPredicted RBP13.64□□□□□ -0.23
VPS28-203ENST00000524521 RAB14P61106 215 aa13.64□□□□□ -0.23
VPS28-203ENST00000524521 Q5VSD8 79 aa13.64□□□□□ -0.23
VPS28-203ENST00000524521 SMIM27A0A1W2PRY6 76 aa13.63□□□□□ -0.23
VPS28-203ENST00000524521 RPS10P46783 165 aaKnown RBP13.63□□□□□ -0.23
VPS28-203ENST00000524521 RNASEKQ6P5S7 137 aaKnown RBP13.63□□□□□ -0.23
VPS28-203ENST00000524521 IGKV3OR2-268A0A0C4DH90 116 aa13.62□□□□□ -0.23
VPS28-203ENST00000524521 SMKR1H3BMG3 65 aa13.62□□□□□ -0.23
VPS28-203ENST00000524521 H7C423 109 aa13.62□□□□□ -0.23
VPS28-203ENST00000524521 PRSS1P07477 247 aa13.62□□□□□ -0.23
VPS28-203ENST00000524521 Q6ZSA8 131 aa13.62□□□□□ -0.23
VPS28-203ENST00000524521 FAM229AH3BQW9 127 aa13.61□□□□□ -0.23
VPS28-203ENST00000524521 FGF6P10767 208 aa13.61□□□□□ -0.23
VPS28-203ENST00000524521 CAMPP49913 170 aa13.61□□□□□ -0.23
VPS28-203ENST00000524521 POLR2KP53803 58 aaKnown RBP13.61□□□□□ -0.23
VPS28-203ENST00000524521 TMEM242Q9NWH2 141 aa13.61□□□□□ -0.23
VPS28-203ENST00000524521 TSHBP01222 138 aa13.6□□□□□ -0.23
VPS28-203ENST00000524521 FAM104BQ5XKR9 115 aa13.58□□□□□ -0.24
VPS28-203ENST00000524521 DGAT2L7PQ6IED9 249 aa13.58□□□□□ -0.24
VPS28-203ENST00000524521 CLRN3Q8NCR9 226 aa13.58□□□□□ -0.24
VPS28-203ENST00000524521 TRBV27A0A0K0K1C4 114 aa13.57□□□□□ -0.24
VPS28-203ENST00000524521 A0A1B0GW15 77 aa13.57□□□□□ -0.24
VPS28-203ENST00000524521 VCYO14598 125 aa13.57□□□□□ -0.24
VPS28-203ENST00000524521 PPP1R17O96001 155 aa13.57□□□□□ -0.24
VPS28-203ENST00000524521 INAFM2P0DMQ5 153 aa13.57□□□□□ -0.24
VPS28-203ENST00000524521 ESDP10768 282 aa13.57□□□□□ -0.24
VPS28-203ENST00000524521 MRPL51Q4U2R6 128 aaKnown RBP13.57□□□□□ -0.24
VPS28-203ENST00000524521 TMEM101Q96IK0 257 aa13.57□□□□□ -0.24
VPS28-203ENST00000524521 BTF3L4Q96K17 158 aa13.57□□□□□ -0.24
VPS28-203ENST00000524521 GAGE12HA6NDE8 117 aa13.56□□□□□ -0.24
VPS28-203ENST00000524521 MRPL54Q6P161 138 aaKnown RBP13.56□□□□□ -0.24
VPS28-203ENST00000524521 NRACQ8N912 160 aa13.56□□□□□ -0.24
VPS28-203ENST00000524521 hDV102S1A0JD36 115 aa13.55□□□□□ -0.24
VPS28-203ENST00000524521 ZNF25P17030 456 aaPredicted RBP13.55□□□□□ -0.24
VPS28-203ENST00000524521 SUMO2P61956 95 aaKnown RBP13.55□□□□□ -0.24
VPS28-203ENST00000524521 FCER1GP30273 86 aa13.54□□□□□ -0.24
VPS28-203ENST00000524521 SCXQ7RTU7 201 aa13.54□□□□□ -0.24
VPS28-203ENST00000524521 CHAC1Q9BUX1 264 aa13.54□□□□□ -0.24
VPS28-203ENST00000524521 S100A8P05109 93 aa13.53□□□□□ -0.24
VPS28-203ENST00000524521 CKS2P33552 79 aa13.53□□□□□ -0.24
VPS28-203ENST00000524521 HBBP68871 147 aa13.53□□□□□ -0.24
VPS28-203ENST00000524521 IFITM2Q01629 132 aa13.53□□□□□ -0.24
VPS28-203ENST00000524521 C9orf163Q8N9P6 203 aa13.53□□□□□ -0.24
VPS28-203ENST00000524521 OR5A1Q8NGJ0 315 aa13.53□□□□□ -0.24
VPS28-203ENST00000524521 CHCHD10Q8WYQ3 142 aaPredicted RBP13.53□□□□□ -0.24
VPS28-203ENST00000524521 C7orf77A4D0Y5 90 aa13.52□□□□□ -0.25
VPS28-203ENST00000524521 LINC00862A6NCI5 91 aa13.52□□□□□ -0.25
VPS28-203ENST00000524521 PPP1R2P9O14990 202 aa13.52□□□□□ -0.25
VPS28-203ENST00000524521 CLLU1Q5K131 121 aa13.52□□□□□ -0.25
VPS28-203ENST00000524521 KIR2DL4Q99706 377 aa13.52□□□□□ -0.25
VPS28-203ENST00000524521 F8W036 122 aa13.51□□□□□ -0.25
VPS28-203ENST00000524521 AP5S1Q9NUS5 200 aa13.51□□□□□ -0.25
VPS28-203ENST00000524521 DNAH8Q96JB1 4490 aa13.51□□□□□ -0.25
VPS28-203ENST00000524521 A0A1B0GXF2 115 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms