RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 CD300EQ496F6 205 aaPredicted RBP11.74□□□□□ -0.53
SQSTM1-213ENST00000510187 SCGB1D4Q6XE38 83 aa11.74□□□□□ -0.53
SQSTM1-213ENST00000510187 COL6A5A8TX70 2615 aa11.74□□□□□ -0.53
SQSTM1-213ENST00000510187 IGKV3-20P01619 116 aa11.74□□□□□ -0.53
SQSTM1-213ENST00000510187 NFE4Q86UQ8 179 aa11.74□□□□□ -0.53
SQSTM1-213ENST00000510187 TMEM61Q8N0U2 210 aa11.74□□□□□ -0.53
SQSTM1-213ENST00000510187 SPANXB1Q9NS25 103 aaPredicted RBP11.73□□□□□ -0.53
SQSTM1-213ENST00000510187 UBE2D1P51668 147 aa11.72□□□□□ -0.53
SQSTM1-213ENST00000510187 PIK3CD-AS1Q5SR53 167 aa11.72□□□□□ -0.53
SQSTM1-213ENST00000510187 SPATA3Q8NHX4 192 aa11.72□□□□□ -0.53
SQSTM1-213ENST00000510187 STAB1Q9NY15 2570 aa11.72□□□□□ -0.53
SQSTM1-213ENST00000510187 I3L3M4 83 aa11.72□□□□□ -0.53
SQSTM1-213ENST00000510187 COTL1Q14019 142 aa11.72□□□□□ -0.53
SQSTM1-213ENST00000510187 PLEKHB2Q96CS7 222 aa11.72□□□□□ -0.53
SQSTM1-213ENST00000510187 SRSF9Q13242 221 aaKnown RBP eCLIP11.71□□□□□ -0.54
SQSTM1-213ENST00000510187 C20orf203Q8NBC4 194 aa11.71□□□□□ -0.54
SQSTM1-213ENST00000510187 MDFIQ99750 246 aa11.71□□□□□ -0.54
SQSTM1-213ENST00000510187 TRAV25A0A0B4J276 109 aa11.7□□□□□ -0.54
SQSTM1-213ENST00000510187 A0A0J9YY99 117 aa11.7□□□□□ -0.54
SQSTM1-213ENST00000510187 IGLV1-51P01701 117 aa11.7□□□□□ -0.54
SQSTM1-213ENST00000510187 PTH2Q96A98 100 aa11.7□□□□□ -0.54
SQSTM1-213ENST00000510187 TMEM170BQ5T4T1 132 aa11.69□□□□□ -0.54
SQSTM1-213ENST00000510187 ZNRF2Q8NHG8 242 aa11.69□□□□□ -0.54
SQSTM1-213ENST00000510187 SPAG8Q99932 426 aaPredicted RBP11.69□□□□□ -0.54
SQSTM1-213ENST00000510187 AGRNO00468 2067 aa11.69□□□□□ -0.54
SQSTM1-213ENST00000510187 C9orf66Q5T8R8 295 aa11.69□□□□□ -0.54
SQSTM1-213ENST00000510187 WFDC9Q8NEX5 89 aa11.69□□□□□ -0.54
SQSTM1-213ENST00000510187 TRRAPQ9Y4A5 3859 aa11.68□□□□□ -0.54
SQSTM1-213ENST00000510187 P0DMU3 169 aa11.68□□□□□ -0.54
SQSTM1-213ENST00000510187 FAM231AP0DMU4 169 aa11.68□□□□□ -0.54
SQSTM1-213ENST00000510187 FAM231CP0DMU5 169 aa11.68□□□□□ -0.54
SQSTM1-213ENST00000510187 INSL3P51460 131 aa11.68□□□□□ -0.54
SQSTM1-213ENST00000510187 LYRM7Q5U5X0 104 aa11.68□□□□□ -0.54
SQSTM1-213ENST00000510187 PGPEP1Q9NXJ5 209 aa11.68□□□□□ -0.54
SQSTM1-213ENST00000510187 VWFP04275 2813 aa11.67□□□□□ -0.54
SQSTM1-213ENST00000510187 TEX48A0A1B0GUV7 120 aa11.67□□□□□ -0.54
SQSTM1-213ENST00000510187 J3QQQ9 107 aa11.67□□□□□ -0.54
SQSTM1-213ENST00000510187 LEPROTO15243 131 aa11.67□□□□□ -0.54
SQSTM1-213ENST00000510187 CRYBA4P53673 196 aa11.67□□□□□ -0.54
SQSTM1-213ENST00000510187 EMP1P54849 157 aa11.67□□□□□ -0.54
SQSTM1-213ENST00000510187 RPL24P83731 157 aaKnown RBP11.67□□□□□ -0.54
SQSTM1-213ENST00000510187 SLC25A29Q8N8R3 303 aa11.67□□□□□ -0.54
SQSTM1-213ENST00000510187 LINC00467Q9BRT7 94 aa11.67□□□□□ -0.54
SQSTM1-213ENST00000510187 PYGO1Q9Y3Y4 419 aa11.67□□□□□ -0.54
SQSTM1-213ENST00000510187 TMEM223A0PJW6 202 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 A8MWV9 139 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 H3BMM0 161 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 J3QR89 54 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 RBMY1A1P0DJD3 496 aaKnown RBP11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 RBMY1CP0DJD4 496 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 LGALS3P17931 250 aaKnown RBP11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 TSPEAR-AS2P59090 65 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 RBMY1FQ15415 496 aaKnown RBP11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 GAGE13Q4V321 117 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 AMELXQ99217 191 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 MRPL16Q9NX20 251 aaKnown RBP11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 KNCNA6PVL3 124 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 H3BMG7 143 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 DEFB131AP59861 70 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 PRO0461Q9UI25 63 aa11.66□□□□□ -0.54
SQSTM1-213ENST00000510187 IGLV4-3A0A075B6K6 122 aa11.65□□□□□ -0.54
SQSTM1-213ENST00000510187 M0R2P5 195 aa11.65□□□□□ -0.54
SQSTM1-213ENST00000510187 IGHV3-30P01768 117 aa11.65□□□□□ -0.54
SQSTM1-213ENST00000510187 IGHV3-30-5P0DP03 117 aa11.65□□□□□ -0.54
SQSTM1-213ENST00000510187 ZNF415Q09FC8 603 aa11.65□□□□□ -0.54
SQSTM1-213ENST00000510187 WFDC2Q14508 124 aa11.64□□□□□ -0.55
SQSTM1-213ENST00000510187 DEFB104AQ8WTQ1 72 aa11.64□□□□□ -0.55
SQSTM1-213ENST00000510187 VCX2Q9H322 139 aa11.64□□□□□ -0.55
SQSTM1-213ENST00000510187 RHODO00212 210 aa11.63□□□□□ -0.55
SQSTM1-213ENST00000510187 TSPAN13O95857 204 aa11.63□□□□□ -0.55
SQSTM1-213ENST00000510187 ZNF22P17026 224 aaPredicted RBP11.63□□□□□ -0.55
SQSTM1-213ENST00000510187 NOTCH3Q9UM47 2321 aa11.63□□□□□ -0.55
SQSTM1-213ENST00000510187 RBMY1BA6NDE4 496 aaKnown RBP11.63□□□□□ -0.55
SQSTM1-213ENST00000510187 RBMY1EA6NEQ0 496 aaKnown RBP11.63□□□□□ -0.55
SQSTM1-213ENST00000510187 RBMY1DP0C7P1 496 aaKnown RBP11.63□□□□□ -0.55
SQSTM1-213ENST00000510187 UBE2D3P61077 147 aa11.63□□□□□ -0.55
SQSTM1-213ENST00000510187 UBE2D2P62837 147 aa11.63□□□□□ -0.55
SQSTM1-213ENST00000510187 MAP6D1Q9H9H5 199 aa11.62□□□□□ -0.55
SQSTM1-213ENST00000510187 SORL1Q92673 2214 aa11.61□□□□□ -0.55
SQSTM1-213ENST00000510187 CLUHP3Q96NS8 147 aa11.61□□□□□ -0.55
SQSTM1-213ENST00000510187 OPRPNQ99935 248 aaPredicted RBP11.61□□□□□ -0.55
SQSTM1-213ENST00000510187 BEAN1Q3B7T3 259 aa11.6□□□□□ -0.55
SQSTM1-213ENST00000510187 ATP6V0E2Q8NHE4 81 aa11.6□□□□□ -0.55
SQSTM1-213ENST00000510187 SPXQ9BT56 116 aa11.6□□□□□ -0.55
SQSTM1-213ENST00000510187 TNFRSF18Q9Y5U5 241 aa11.6□□□□□ -0.55
SQSTM1-213ENST00000510187 ODF3L2Q3SX64 289 aa11.6□□□□□ -0.55
SQSTM1-213ENST00000510187 DNAJC30Q96LL9 226 aa11.6□□□□□ -0.55
SQSTM1-213ENST00000510187 SPANXA1Q9NS26 97 aa11.6□□□□□ -0.55
SQSTM1-213ENST00000510187 TRBV20-1A0A075B6N2 111 aa11.59□□□□□ -0.55
SQSTM1-213ENST00000510187 APOMO95445 188 aa11.59□□□□□ -0.55
SQSTM1-213ENST00000510187 CFC1BP0CG36 223 aa11.59□□□□□ -0.55
SQSTM1-213ENST00000510187 CFC1P0CG37 223 aa11.59□□□□□ -0.55
SQSTM1-213ENST00000510187 MRPS36P82909 103 aaKnown RBP11.59□□□□□ -0.55
SQSTM1-213ENST00000510187 C10orf126Q8N4M7 172 aa11.59□□□□□ -0.55
SQSTM1-213ENST00000510187 A0A0J9YXV3 536 aa11.58□□□□□ -0.56
SQSTM1-213ENST00000510187 WIPF1O43516 503 aa11.58□□□□□ -0.56
SQSTM1-213ENST00000510187 CMC4P56277 68 aaPredicted RBP11.58□□□□□ -0.56
SQSTM1-213ENST00000510187 ETDBQ3ZM63 59 aa11.58□□□□□ -0.56
SQSTM1-213ENST00000510187 CFAP126Q5VTH2 177 aa11.58□□□□□ -0.56
SQSTM1-213ENST00000510187 ANK2Q01484 3957 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms