RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 C20orf203Q8NBC4 194 aa8.28□□□□□ -1.08
PTPRF-214ENST00000496043 CLRN3Q8NCR9 226 aa8.28□□□□□ -1.08
PTPRF-214ENST00000496043 LYPD6BQ8NI32 183 aa8.28□□□□□ -1.08
PTPRF-214ENST00000496043 A8MWL6 223 aa8.27□□□□□ -1.09
PTPRF-214ENST00000496043 FAM231DQ6ZW35 169 aa8.27□□□□□ -1.09
PTPRF-214ENST00000496043 GATD1Q8NB37 220 aa8.27□□□□□ -1.09
PTPRF-214ENST00000496043 CIRBP-AS1Q8TBR5 109 aa8.27□□□□□ -1.09
PTPRF-214ENST00000496043 DEFB104AQ8WTQ1 72 aa8.27□□□□□ -1.09
PTPRF-214ENST00000496043 SRRM2Q9UQ35 2752 aaKnown RBP8.26□□□□□ -1.09
PTPRF-214ENST00000496043 IGLV4-60A0A075B6I1 120 aa8.26□□□□□ -1.09
PTPRF-214ENST00000496043 IGLV10-54A0A075B6I4 117 aa8.26□□□□□ -1.09
PTPRF-214ENST00000496043 AMTP48728 403 aa8.26□□□□□ -1.09
PTPRF-214ENST00000496043 CEBPGP53567 150 aa8.26□□□□□ -1.09
PTPRF-214ENST00000496043 TEX261Q6UWH6 196 aa8.26□□□□□ -1.09
PTPRF-214ENST00000496043 C9orf163Q8N9P6 203 aa8.26□□□□□ -1.09
PTPRF-214ENST00000496043 GTSF1Q8WW33 167 aa8.26□□□□□ -1.09
PTPRF-214ENST00000496043 FLG2Q5D862 2391 aaPredicted RBP8.26□□□□□ -1.09
PTPRF-214ENST00000496043 TRAV26-2A0A0B4J265 109 aa8.25□□□□□ -1.09
PTPRF-214ENST00000496043 J3QL48 77 aa8.25□□□□□ -1.09
PTPRF-214ENST00000496043 FOXA3P55318 350 aaPredicted RBP8.25□□□□□ -1.09
PTPRF-214ENST00000496043 EIF5A2Q9GZV4 153 aaKnown RBP8.25□□□□□ -1.09
PTPRF-214ENST00000496043 NDUFS6O75380 124 aaKnown RBP8.24□□□□□ -1.09
PTPRF-214ENST00000496043 GFRA4Q9GZZ7 299 aa8.24□□□□□ -1.09
PTPRF-214ENST00000496043 NCR2O95944 276 aa8.23□□□□□ -1.09
PTPRF-214ENST00000496043 CT83Q5H943 113 aa8.23□□□□□ -1.09
PTPRF-214ENST00000496043 BORCS7Q96B45 105 aa8.23□□□□□ -1.09
PTPRF-214ENST00000496043 RPL39LQ96EH5 51 aaKnown RBP8.23□□□□□ -1.09
PTPRF-214ENST00000496043 DMBT1Q9UGM3 2413 aaPredicted RBP8.23□□□□□ -1.09
PTPRF-214ENST00000496043 HERC1Q15751 4861 aa8.22□□□□□ -1.09
PTPRF-214ENST00000496043 hDV102S1A0JD36 115 aa8.22□□□□□ -1.09
PTPRF-214ENST00000496043 H7C423 109 aa8.22□□□□□ -1.09
PTPRF-214ENST00000496043 PMCHP20382 165 aa8.22□□□□□ -1.09
PTPRF-214ENST00000496043 AMMECR1LQ6DCA0 310 aa8.22□□□□□ -1.09
PTPRF-214ENST00000496043 SDIM1Q6ZPB5 146 aa8.22□□□□□ -1.09
PTPRF-214ENST00000496043 SMIM7Q9BQ49 75 aa8.22□□□□□ -1.09
PTPRF-214ENST00000496043 AP5S1Q9NUS5 200 aa8.22□□□□□ -1.09
PTPRF-214ENST00000496043 SDHAF1A6NFY7 115 aa8.21□□□□□ -1.1
PTPRF-214ENST00000496043 ZNF727A8MUV8 499 aa8.21□□□□□ -1.1
PTPRF-214ENST00000496043 KRTAP29-1A8MX34 341 aaPredicted RBP8.21□□□□□ -1.1
PTPRF-214ENST00000496043 CNBPP62633 177 aaKnown RBP8.21□□□□□ -1.1
PTPRF-214ENST00000496043 CFAP161Q6P656 301 aa8.21□□□□□ -1.1
PTPRF-214ENST00000496043 TSKUQ8WUA8 353 aa8.21□□□□□ -1.1
PTPRF-214ENST00000496043 FAM210AQ96ND0 272 aa8.21□□□□□ -1.1
PTPRF-214ENST00000496043 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.2□□□□□ -1.1
PTPRF-214ENST00000496043 IGKV3OR2-268A0A0C4DH90 116 aa8.2□□□□□ -1.1
PTPRF-214ENST00000496043 A0A1B0GUT8 65 aa8.2□□□□□ -1.1
PTPRF-214ENST00000496043 FAM231BA6NCW3 169 aa8.2□□□□□ -1.1
PTPRF-214ENST00000496043 I3L3M4 83 aa8.2□□□□□ -1.1
PTPRF-214ENST00000496043 APCSP02743 223 aa8.2□□□□□ -1.1
PTPRF-214ENST00000496043 SRP19P09132 144 aaKnown RBP8.2□□□□□ -1.1
PTPRF-214ENST00000496043 IFITM2Q01629 132 aa8.2□□□□□ -1.1
PTPRF-214ENST00000496043 RNASEKQ6P5S7 137 aaKnown RBP8.2□□□□□ -1.1
PTPRF-214ENST00000496043 LINC01551Q86U37 167 aa8.2□□□□□ -1.1
PTPRF-214ENST00000496043 DPH3Q96FX2 82 aa8.2□□□□□ -1.1
PTPRF-214ENST00000496043 OSTCQ9NRP0 149 aa8.2□□□□□ -1.1
PTPRF-214ENST00000496043 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.19□□□□□ -1.1
PTPRF-214ENST00000496043 TRBV6-5A0A0K0K1A5 114 aa8.19□□□□□ -1.1
PTPRF-214ENST00000496043 IGKV2-29A2NJV5 120 aaPredicted RBP8.19□□□□□ -1.1
PTPRF-214ENST00000496043 GAGE12HA6NDE8 117 aa8.19□□□□□ -1.1
PTPRF-214ENST00000496043 HIGD1CA8MV81 97 aa8.19□□□□□ -1.1
PTPRF-214ENST00000496043 TMEM191AQ9H0A3 160 aa8.19□□□□□ -1.1
PTPRF-214ENST00000496043 ST20Q9HBF5 79 aa8.19□□□□□ -1.1
PTPRF-214ENST00000496043 MYCBP2O75592 4640 aa8.18□□□□□ -1.1
PTPRF-214ENST00000496043 IGHV3-64A0A075B6Q5 118 aa8.18□□□□□ -1.1
PTPRF-214ENST00000496043 FGF6P10767 208 aa8.18□□□□□ -1.1
PTPRF-214ENST00000496043 KRTAP10-4P60372 401 aaPredicted RBP8.18□□□□□ -1.1
PTPRF-214ENST00000496043 TMEM241Q24JQ0 296 aa8.18□□□□□ -1.1
PTPRF-214ENST00000496043 TMEM101Q96IK0 257 aa8.18□□□□□ -1.1
PTPRF-214ENST00000496043 BTF3L4Q96K17 158 aa8.18□□□□□ -1.1
PTPRF-214ENST00000496043 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.18□□□□□ -1.1
PTPRF-214ENST00000496043 SLPIP03973 132 aa8.17□□□□□ -1.1
PTPRF-214ENST00000496043 ZNF25P17030 456 aaPredicted RBP8.17□□□□□ -1.1
PTPRF-214ENST00000496043 RAB4AP20338 218 aa8.17□□□□□ -1.1
PTPRF-214ENST00000496043 RPL37AP61513 92 aaKnown RBP8.17□□□□□ -1.1
PTPRF-214ENST00000496043 RIGQ13278 110 aa8.17□□□□□ -1.1
PTPRF-214ENST00000496043 FAM74A3Q4VXF1 159 aa8.17□□□□□ -1.1
PTPRF-214ENST00000496043 CHCHD10Q8WYQ3 142 aaPredicted RBP8.17□□□□□ -1.1
PTPRF-214ENST00000496043 GAS8-AS1O95177 125 aa8.16□□□□□ -1.1
PTPRF-214ENST00000496043 POLR2KP53803 58 aaKnown RBP8.16□□□□□ -1.1
PTPRF-214ENST00000496043 OR5A1Q8NGJ0 315 aa8.16□□□□□ -1.1
PTPRF-214ENST00000496043 MRAP2Q96G30 205 aa8.16□□□□□ -1.1
PTPRF-214ENST00000496043 RNF185Q96GF1 192 aa8.16□□□□□ -1.1
PTPRF-214ENST00000496043 PANO1I0J062 215 aa8.15□□□□□ -1.1
PTPRF-214ENST00000496043 OXTP01178 125 aa8.15□□□□□ -1.1
PTPRF-214ENST00000496043 ESDP10768 282 aa8.15□□□□□ -1.1
PTPRF-214ENST00000496043 RPS10P46783 165 aaKnown RBP8.15□□□□□ -1.1
PTPRF-214ENST00000496043 V9GYV3 84 aa8.15□□□□□ -1.1
PTPRF-214ENST00000496043 VCYO14598 125 aa8.14□□□□□ -1.11
PTPRF-214ENST00000496043 PPP1R17O96001 155 aa8.14□□□□□ -1.11
PTPRF-214ENST00000496043 TSHBP01222 138 aa8.14□□□□□ -1.11
PTPRF-214ENST00000496043 CIRBPQ14011 172 aaKnown RBP8.14□□□□□ -1.11
PTPRF-214ENST00000496043 AMN1Q8IY45 258 aa8.14□□□□□ -1.11
PTPRF-214ENST00000496043 C15orf56Q8N910 161 aa8.14□□□□□ -1.11
PTPRF-214ENST00000496043 NUP35Q8NFH5 326 aa8.14□□□□□ -1.11
PTPRF-214ENST00000496043 ISOC2Q96AB3 205 aa8.14□□□□□ -1.11
PTPRF-214ENST00000496043 TMEM242Q9NWH2 141 aa8.14□□□□□ -1.11
PTPRF-214ENST00000496043 TRBV27A0A0K0K1C4 114 aa8.13□□□□□ -1.11
PTPRF-214ENST00000496043 LINC00959A0A1B0GUT2 108 aa8.13□□□□□ -1.11
PTPRF-214ENST00000496043 RPL23P62829 140 aaKnown RBP8.13□□□□□ -1.11
PTPRF-214ENST00000496043 PEA15Q15121 130 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms