RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 HMSDA8MTL9 139 aa8.43□□□□□ -1.06
VCL-205ENST00000478896 F2Z2F3 143 aa8.43□□□□□ -1.06
VCL-205ENST00000478896 TEX46H3BTG2 121 aa8.43□□□□□ -1.06
VCL-205ENST00000478896 IFNA1P01562 189 aa8.43□□□□□ -1.06
VCL-205ENST00000478896 SPACA4Q8TDM5 124 aa8.43□□□□□ -1.06
VCL-205ENST00000478896 SMIM12Q96EX1 92 aa8.43□□□□□ -1.06
VCL-205ENST00000478896 RNF185Q96GF1 192 aa8.43□□□□□ -1.06
VCL-205ENST00000478896 NIT2Q9NQR4 276 aa8.43□□□□□ -1.06
VCL-205ENST00000478896 MT1HL1P0DM35 61 aa8.42□□□□□ -1.06
VCL-205ENST00000478896 CCL20P78556 96 aa8.42□□□□□ -1.06
VCL-205ENST00000478896 CFAP161Q6P656 301 aa8.42□□□□□ -1.06
VCL-205ENST00000478896 LYZL1Q6UWQ5 148 aa8.42□□□□□ -1.06
VCL-205ENST00000478896 C7orf33Q8WU49 177 aa8.42□□□□□ -1.06
VCL-205ENST00000478896 RAB19A4D1S5 217 aa8.41□□□□□ -1.06
VCL-205ENST00000478896 GAGE12HA6NDE8 117 aa8.41□□□□□ -1.06
VCL-205ENST00000478896 SLPIP03973 132 aa8.41□□□□□ -1.06
VCL-205ENST00000478896 NTF3P20783 257 aa8.41□□□□□ -1.06
VCL-205ENST00000478896 BIN3Q9NQY0 253 aa8.41□□□□□ -1.06
VCL-205ENST00000478896 UBR4Q5T4S7 5183 aa8.4□□□□□ -1.06
VCL-205ENST00000478896 PHOX2AO14813 284 aa8.4□□□□□ -1.06
VCL-205ENST00000478896 PDE6DO43924 150 aa8.4□□□□□ -1.06
VCL-205ENST00000478896 MEF2BQ02080 365 aaPredicted RBP8.4□□□□□ -1.06
VCL-205ENST00000478896 TWIST1Q15672 202 aa8.4□□□□□ -1.06
VCL-205ENST00000478896 HIGD2BQ4VC39 106 aa8.4□□□□□ -1.06
VCL-205ENST00000478896 AMMECR1LQ6DCA0 310 aa8.4□□□□□ -1.06
VCL-205ENST00000478896 C15orf56Q8N910 161 aa8.4□□□□□ -1.06
VCL-205ENST00000478896 MED9Q9NWA0 146 aa8.4□□□□□ -1.06
VCL-205ENST00000478896 IGKV2-24A0A0C4DH68 120 aa8.39□□□□□ -1.07
VCL-205ENST00000478896 NDUFS6O75380 124 aaKnown RBP8.39□□□□□ -1.07
VCL-205ENST00000478896 COX6A2Q02221 97 aa8.39□□□□□ -1.07
VCL-205ENST00000478896 MAJINQ3KP22 176 aa8.39□□□□□ -1.07
VCL-205ENST00000478896 RNASEKQ6P5S7 137 aaKnown RBP8.39□□□□□ -1.07
VCL-205ENST00000478896 PLAC8Q9NZF1 115 aa8.39□□□□□ -1.07
VCL-205ENST00000478896 TRAV1-1A0A0B4J248 108 aa8.38□□□□□ -1.07
VCL-205ENST00000478896 TRAV26-2A0A0B4J265 109 aa8.38□□□□□ -1.07
VCL-205ENST00000478896 CTRLP40313 264 aa8.38□□□□□ -1.07
VCL-205ENST00000478896 RPS10P46783 165 aaKnown RBP8.38□□□□□ -1.07
VCL-205ENST00000478896 EIF5AL1Q6IS14 154 aaKnown RBP8.38□□□□□ -1.07
VCL-205ENST00000478896 GTSF1Q8WW33 167 aa8.38□□□□□ -1.07
VCL-205ENST00000478896 TRBV20OR9-2A0A075B6H5 130 aa8.37□□□□□ -1.07
VCL-205ENST00000478896 APCSP02743 223 aa8.37□□□□□ -1.07
VCL-205ENST00000478896 SMIM15Q7Z3B0 74 aa8.37□□□□□ -1.07
VCL-205ENST00000478896 C9orf62Q8N4C0 152 aa8.37□□□□□ -1.07
VCL-205ENST00000478896 CHCHD10Q8WYQ3 142 aaPredicted RBP8.37□□□□□ -1.07
VCL-205ENST00000478896 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.36□□□□□ -1.07
VCL-205ENST00000478896 IGKV2-29A2NJV5 120 aaPredicted RBP8.36□□□□□ -1.07
VCL-205ENST00000478896 BCL2P10415 239 aa8.36□□□□□ -1.07
VCL-205ENST00000478896 Q6ZNX1 250 aa8.36□□□□□ -1.07
VCL-205ENST00000478896 STPG4Q8N801 248 aa8.36□□□□□ -1.07
VCL-205ENST00000478896 GATD1Q8NB37 220 aa8.36□□□□□ -1.07
VCL-205ENST00000478896 NUDT10Q8NFP7 164 aa8.36□□□□□ -1.07
VCL-205ENST00000478896 PRSS3P2Q8NHM4 247 aa8.36□□□□□ -1.07
VCL-205ENST00000478896 NUDT11Q96G61 164 aa8.36□□□□□ -1.07
VCL-205ENST00000478896 RPP21Q9H633 154 aaKnown RBP8.36□□□□□ -1.07
VCL-205ENST00000478896 NCR2O95944 276 aa8.35□□□□□ -1.07
VCL-205ENST00000478896 LYPD6BQ8NI32 183 aa8.35□□□□□ -1.07
VCL-205ENST00000478896 RPL39LQ96EH5 51 aaKnown RBP8.35□□□□□ -1.07
VCL-205ENST00000478896 CNFNQ9BYD5 112 aa8.35□□□□□ -1.07
VCL-205ENST00000478896 RNASE7Q9H1E1 156 aaKnown RBP8.35□□□□□ -1.07
VCL-205ENST00000478896 GVQW2A0A096LPI5 108 aaPredicted RBP8.34□□□□□ -1.07
VCL-205ENST00000478896 H7C423 109 aa8.34□□□□□ -1.07
VCL-205ENST00000478896 FGF6P10767 208 aa8.34□□□□□ -1.07
VCL-205ENST00000478896 PRR3P79522 188 aaKnown RBP8.34□□□□□ -1.07
VCL-205ENST00000478896 SDHAF1A6NFY7 115 aa8.33□□□□□ -1.08
VCL-205ENST00000478896 BTF3L4Q96K17 158 aa8.33□□□□□ -1.08
VCL-205ENST00000478896 PKIGQ9Y2B9 76 aa8.33□□□□□ -1.08
VCL-205ENST00000478896 A0A096LNI7 61 aa8.32□□□□□ -1.08
VCL-205ENST00000478896 ZNF25P17030 456 aaPredicted RBP8.32□□□□□ -1.08
VCL-205ENST00000478896 XCL1P47992 114 aa8.32□□□□□ -1.08
VCL-205ENST00000478896 TEX261Q6UWH6 196 aa8.32□□□□□ -1.08
VCL-205ENST00000478896 OR5A1Q8NGJ0 315 aa8.32□□□□□ -1.08
VCL-205ENST00000478896 TMEM101Q96IK0 257 aa8.32□□□□□ -1.08
VCL-205ENST00000478896 LINC00474Q9P2X8 69 aa8.32□□□□□ -1.08
VCL-205ENST00000478896 I3L3M4 83 aa8.31□□□□□ -1.08
VCL-205ENST00000478896 K7EN84 100 aa8.31□□□□□ -1.08
VCL-205ENST00000478896 PMCHP20382 165 aa8.31□□□□□ -1.08
VCL-205ENST00000478896 TAGLN2P37802 199 aaKnown RBP8.31□□□□□ -1.08
VCL-205ENST00000478896 FOXI1Q12951 378 aa8.31□□□□□ -1.08
VCL-205ENST00000478896 LINC01600Q96MT4 127 aa8.31□□□□□ -1.08
VCL-205ENST00000478896 IGHV1-58A0A0C4DH39 117 aa8.3□□□□□ -1.08
VCL-205ENST00000478896 CCL25O15444 150 aa8.3□□□□□ -1.08
VCL-205ENST00000478896 FOXA3P55318 350 aaPredicted RBP8.3□□□□□ -1.08
VCL-205ENST00000478896 OCC1Q8TAD7 63 aa8.3□□□□□ -1.08
VCL-205ENST00000478896 CARD19Q96LW7 228 aa8.3□□□□□ -1.08
VCL-205ENST00000478896 GATCO43716 136 aaKnown RBP8.29□□□□□ -1.08
VCL-205ENST00000478896 BORCS7Q96B45 105 aa8.29□□□□□ -1.08
VCL-205ENST00000478896 LINC00526Q96FQ7 95 aa8.29□□□□□ -1.08
VCL-205ENST00000478896 MRAP2Q96G30 205 aa8.29□□□□□ -1.08
VCL-205ENST00000478896 LINC00959A0A1B0GUT2 108 aa8.28□□□□□ -1.08
VCL-205ENST00000478896 ZNF561-AS1K7EIQ3 104 aa8.28□□□□□ -1.08
VCL-205ENST00000478896 SS18Q15532 418 aa8.28□□□□□ -1.08
VCL-205ENST00000478896 REG3GQ6UW15 175 aa8.28□□□□□ -1.08
VCL-205ENST00000478896 SLC51BQ86UW2 128 aa8.28□□□□□ -1.08
VCL-205ENST00000478896 TMEM242Q9NWH2 141 aa8.28□□□□□ -1.08
VCL-205ENST00000478896 A8MWL6 223 aa8.27□□□□□ -1.09
VCL-205ENST00000478896 SPINK6Q6UWN8 80 aa8.27□□□□□ -1.09
VCL-205ENST00000478896 ST20Q9HBF5 79 aa8.27□□□□□ -1.09
VCL-205ENST00000478896 A0A0J9YXV3 536 aa8.26□□□□□ -1.09
VCL-205ENST00000478896 FAM231BA6NCW3 169 aa8.26□□□□□ -1.09
VCL-205ENST00000478896 CEBPGP53567 150 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 154.9 ms