RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 NACAE9PAV3 2078 aa13.91□□□□□ -0.18
SDCBP-204ENST00000447182 ADARB2-AS1A8MUL3 147 aa13.91□□□□□ -0.18
SDCBP-204ENST00000447182 H3BMM0 161 aa13.91□□□□□ -0.18
SDCBP-204ENST00000447182 RNF183Q96D59 192 aa13.91□□□□□ -0.18
SDCBP-204ENST00000447182 ZNF702PQ9H963 129 aa13.9□□□□□ -0.18
SDCBP-204ENST00000447182 TRIAP1O43715 76 aa13.9□□□□□ -0.18
SDCBP-204ENST00000447182 HTN1P15515 57 aa13.9□□□□□ -0.18
SDCBP-204ENST00000447182 DEFB131AP59861 70 aa13.9□□□□□ -0.18
SDCBP-204ENST00000447182 CELSR2Q9HCU4 2923 aa13.89□□□□□ -0.19
SDCBP-204ENST00000447182 ZNF415Q09FC8 603 aa13.89□□□□□ -0.19
SDCBP-204ENST00000447182 MIAQ16674 131 aa13.89□□□□□ -0.19
SDCBP-204ENST00000447182 ADAMTSL4-AS1Q5T5F5 129 aa13.89□□□□□ -0.19
SDCBP-204ENST00000447182 DUX3Q96PT4 197 aa13.89□□□□□ -0.19
SDCBP-204ENST00000447182 A0A096LNT2 108 aa13.88□□□□□ -0.19
SDCBP-204ENST00000447182 TRBV10-2A0A0K0K1G8 114 aa13.88□□□□□ -0.19
SDCBP-204ENST00000447182 RBMY1BA6NDE4 496 aaKnown RBP13.88□□□□□ -0.19
SDCBP-204ENST00000447182 RBMY1EA6NEQ0 496 aaKnown RBP13.88□□□□□ -0.19
SDCBP-204ENST00000447182 RBMY1DP0C7P1 496 aaKnown RBP13.88□□□□□ -0.19
SDCBP-204ENST00000447182 RPL13AP40429 203 aaKnown RBP13.88□□□□□ -0.19
SDCBP-204ENST00000447182 MAP1AP78559 2803 aaPredicted RBP13.88□□□□□ -0.19
SDCBP-204ENST00000447182 PRSS2P07478 247 aa13.88□□□□□ -0.19
SDCBP-204ENST00000447182 Q6ZSN1 163 aa13.88□□□□□ -0.19
SDCBP-204ENST00000447182 RNASE13Q5GAN3 156 aaKnown RBP13.87□□□□□ -0.19
SDCBP-204ENST00000447182 NTN5Q8WTR8 489 aaPredicted RBP13.87□□□□□ -0.19
SDCBP-204ENST00000447182 DNAJC30Q96LL9 226 aa13.87□□□□□ -0.19
SDCBP-204ENST00000447182 LINC00467Q9BRT7 94 aa13.87□□□□□ -0.19
SDCBP-204ENST00000447182 Q9UF83 564 aa13.87□□□□□ -0.19
SDCBP-204ENST00000447182 CRYBG3Q68DQ2 2970 aa13.87□□□□□ -0.19
SDCBP-204ENST00000447182 ZFAND6Q6FIF0 208 aa13.87□□□□□ -0.19
SDCBP-204ENST00000447182 ICOSQ9Y6W8 199 aa13.87□□□□□ -0.19
SDCBP-204ENST00000447182 TIMM17BO60830 172 aa13.86□□□□□ -0.19
SDCBP-204ENST00000447182 CITED1Q99966 193 aa13.86□□□□□ -0.19
SDCBP-204ENST00000447182 IGHV3-53P01767 116 aa13.85□□□□□ -0.19
SDCBP-204ENST00000447182 Q6YL49 198 aa13.85□□□□□ -0.19
SDCBP-204ENST00000447182 DOPEY1Q5JWR5 2465 aa13.85□□□□□ -0.19
SDCBP-204ENST00000447182 YAE1D1Q9NRH1 226 aa13.85□□□□□ -0.19
SDCBP-204ENST00000447182 CREBBPQ92793 2442 aa13.84□□□□□ -0.19
SDCBP-204ENST00000447182 FSHBP01225 129 aa13.84□□□□□ -0.19
SDCBP-204ENST00000447182 PRM2P04554 102 aa13.84□□□□□ -0.19
SDCBP-204ENST00000447182 SLURP1P55000 103 aa13.84□□□□□ -0.19
SDCBP-204ENST00000447182 BEAN1Q3B7T3 259 aa13.84□□□□□ -0.19
SDCBP-204ENST00000447182 C11orf72Q8NBR9 251 aa13.84□□□□□ -0.19
SDCBP-204ENST00000447182 BEX4Q9NWD9 120 aaPredicted RBP13.84□□□□□ -0.19
SDCBP-204ENST00000447182 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.84□□□□□ -0.19
SDCBP-204ENST00000447182 TRAV26-1A0A087WT03 109 aa13.84□□□□□ -0.19
SDCBP-204ENST00000447182 IGKV2-29A2NJV5 120 aaPredicted RBP13.84□□□□□ -0.19
SDCBP-204ENST00000447182 IFITM1P13164 125 aa13.84□□□□□ -0.19
SDCBP-204ENST00000447182 IGLV5-45A0A087WSX0 123 aa13.83□□□□□ -0.2
SDCBP-204ENST00000447182 COX6CP09669 75 aa13.83□□□□□ -0.2
SDCBP-204ENST00000447182 TIRAPP58753 221 aa13.83□□□□□ -0.2
SDCBP-204ENST00000447182 TMEM61Q8N0U2 210 aa13.83□□□□□ -0.2
SDCBP-204ENST00000447182 A8MZ25 164 aa13.82□□□□□ -0.2
SDCBP-204ENST00000447182 NRGNQ92686 78 aa13.82□□□□□ -0.2
SDCBP-204ENST00000447182 TEX29Q8N6K0 151 aa13.82□□□□□ -0.2
SDCBP-204ENST00000447182 TEX49A0A1B0GTD5 131 aa13.81□□□□□ -0.2
SDCBP-204ENST00000447182 H3BT86 120 aa13.81□□□□□ -0.2
SDCBP-204ENST00000447182 RS1O15537 224 aa13.81□□□□□ -0.2
SDCBP-204ENST00000447182 DEFB136Q30KP8 78 aa13.81□□□□□ -0.2
SDCBP-204ENST00000447182 PEMTQ9UBM1 199 aa13.81□□□□□ -0.2
SDCBP-204ENST00000447182 H7C423 109 aa13.8□□□□□ -0.2
SDCBP-204ENST00000447182 NDUFA1O15239 70 aa13.8□□□□□ -0.2
SDCBP-204ENST00000447182 C18orf65Q6ZTR6 163 aa13.8□□□□□ -0.2
SDCBP-204ENST00000447182 UBE2WQ96B02 151 aa13.8□□□□□ -0.2
SDCBP-204ENST00000447182 LINC01587Q99440 93 aa13.8□□□□□ -0.2
SDCBP-204ENST00000447182 MAP6D1Q9H9H5 199 aa13.8□□□□□ -0.2
SDCBP-204ENST00000447182 CDKN2A-AS1Q9UH64 79 aa13.8□□□□□ -0.2
SDCBP-204ENST00000447182 C2orf82Q6UX34 121 aa13.79□□□□□ -0.2
SDCBP-204ENST00000447182 Q8N2B8 174 aa13.78□□□□□ -0.2
SDCBP-204ENST00000447182 PKD1L2Q7Z442 2459 aa13.78□□□□□ -0.2
SDCBP-204ENST00000447182 IGHV3-38A0A0C4DH36 116 aa13.78□□□□□ -0.2
SDCBP-204ENST00000447182 LST1O00453 97 aa13.78□□□□□ -0.2
SDCBP-204ENST00000447182 INSP01308 110 aa13.78□□□□□ -0.2
SDCBP-204ENST00000447182 TMEM101Q96IK0 257 aa13.78□□□□□ -0.2
SDCBP-204ENST00000447182 CFAP46Q8IYW2 2715 aa13.78□□□□□ -0.2
SDCBP-204ENST00000447182 TRAV8-4A0A0B4J246 113 aa13.77□□□□□ -0.21
SDCBP-204ENST00000447182 SNCGO76070 127 aa13.77□□□□□ -0.21
SDCBP-204ENST00000447182 NPC2P61916 151 aa13.76□□□□□ -0.21
SDCBP-204ENST00000447182 Q6ZSV7 163 aa13.76□□□□□ -0.21
SDCBP-204ENST00000447182 ANAPC13Q9BS18 74 aa13.76□□□□□ -0.21
SDCBP-204ENST00000447182 USP9XQ93008 2570 aaPredicted RBP13.76□□□□□ -0.21
SDCBP-204ENST00000447182 IGLV5-39A0A0G2JS06 123 aa13.76□□□□□ -0.21
SDCBP-204ENST00000447182 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.76□□□□□ -0.21
SDCBP-204ENST00000447182 MAPK1IP1LQ8NDC0 245 aa13.76□□□□□ -0.21
SDCBP-204ENST00000447182 C4orf3Q8WVX3 66 aa13.76□□□□□ -0.21
SDCBP-204ENST00000447182 CLUHP3Q96NS8 147 aa13.76□□□□□ -0.21
SDCBP-204ENST00000447182 Q6Q795 121 aa13.75□□□□□ -0.21
SDCBP-204ENST00000447182 FAM19A3Q7Z5A8 133 aa13.75□□□□□ -0.21
SDCBP-204ENST00000447182 FLNCQ14315 2725 aa13.75□□□□□ -0.21
SDCBP-204ENST00000447182 HERVK_113P63121 156 aa13.75□□□□□ -0.21
SDCBP-204ENST00000447182 GAGE2BQ13066 116 aa13.75□□□□□ -0.21
SDCBP-204ENST00000447182 CIRBPQ14011 172 aaKnown RBP13.75□□□□□ -0.21
SDCBP-204ENST00000447182 GAGE2EQ4V326 116 aa13.75□□□□□ -0.21
SDCBP-204ENST00000447182 CLEC2BQ92478 149 aa13.75□□□□□ -0.21
SDCBP-204ENST00000447182 GAGE2DQ9UEU5 116 aa13.75□□□□□ -0.21
SDCBP-204ENST00000447182 USP9YO00507 2555 aaPredicted RBP13.74□□□□□ -0.21
SDCBP-204ENST00000447182 IGHV3OR16-12A0A075B7B8 117 aa13.74□□□□□ -0.21
SDCBP-204ENST00000447182 DGAT2L7PQ6IED9 249 aa13.74□□□□□ -0.21
SDCBP-204ENST00000447182 TRAV4A0A0B4J268 109 aa13.73□□□□□ -0.21
SDCBP-204ENST00000447182 DEFB114Q30KQ6 69 aa13.73□□□□□ -0.21
SDCBP-204ENST00000447182 DEFB121Q5J5C9 76 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms