RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 CLUHP3Q96NS8 147 aa11.61□□□□□ -0.55
SHQ1-202ENST00000444040 CRYBA4P53673 196 aa11.61□□□□□ -0.55
SHQ1-202ENST00000444040 CEMP1Q6PRD7 247 aaPredicted RBP11.61□□□□□ -0.55
SHQ1-202ENST00000444040 SPXQ9BT56 116 aa11.61□□□□□ -0.55
SHQ1-202ENST00000444040 CHCHD7Q9BUK0 85 aa11.61□□□□□ -0.55
SHQ1-202ENST00000444040 MYO9AB2RTY4 2548 aa11.61□□□□□ -0.55
SHQ1-202ENST00000444040 APOMO95445 188 aa11.6□□□□□ -0.55
SHQ1-202ENST00000444040 FHL3Q13643 280 aa11.6□□□□□ -0.55
SHQ1-202ENST00000444040 IGHV3-53P01767 116 aa11.6□□□□□ -0.55
SHQ1-202ENST00000444040 MRPS36P82909 103 aaKnown RBP11.6□□□□□ -0.55
SHQ1-202ENST00000444040 IGHV3-64A0A075B6Q5 118 aa11.59□□□□□ -0.55
SHQ1-202ENST00000444040 CFC1BP0CG36 223 aa11.59□□□□□ -0.55
SHQ1-202ENST00000444040 CFC1P0CG37 223 aa11.59□□□□□ -0.55
SHQ1-202ENST00000444040 GAGE13Q4V321 117 aa11.59□□□□□ -0.55
SHQ1-202ENST00000444040 ESM1Q9NQ30 184 aa11.59□□□□□ -0.55
SHQ1-202ENST00000444040 NBPF19A0A087WUL8 3843 aa11.59□□□□□ -0.55
SHQ1-202ENST00000444040 TRAV25A0A0B4J276 109 aa11.59□□□□□ -0.55
SHQ1-202ENST00000444040 RS1O15537 224 aa11.59□□□□□ -0.55
SHQ1-202ENST00000444040 UBE2D3P61077 147 aa11.59□□□□□ -0.55
SHQ1-202ENST00000444040 UBE2D2P62837 147 aa11.59□□□□□ -0.55
SHQ1-202ENST00000444040 AZU1P20160 251 aa11.58□□□□□ -0.56
SHQ1-202ENST00000444040 TEX29Q8N6K0 151 aa11.58□□□□□ -0.56
SHQ1-202ENST00000444040 C11orf44Q8N8P7 122 aa11.58□□□□□ -0.56
SHQ1-202ENST00000444040 UBE2D4Q9Y2X8 147 aa11.58□□□□□ -0.56
SHQ1-202ENST00000444040 MTURNQ8N3F0 131 aa11.58□□□□□ -0.56
SHQ1-202ENST00000444040 DNAJC30Q96LL9 226 aa11.58□□□□□ -0.56
SHQ1-202ENST00000444040 XCL2Q9UBD3 114 aa11.58□□□□□ -0.56
SHQ1-202ENST00000444040 C1orf158Q8N1D5 194 aa11.57□□□□□ -0.56
SHQ1-202ENST00000444040 C10orf126Q8N4M7 172 aa11.57□□□□□ -0.56
SHQ1-202ENST00000444040 RNASE13Q5GAN3 156 aaKnown RBP11.57□□□□□ -0.56
SHQ1-202ENST00000444040 ETDBQ3ZM63 59 aa11.56□□□□□ -0.56
SHQ1-202ENST00000444040 SH2D6Q7Z4S9 175 aa11.56□□□□□ -0.56
SHQ1-202ENST00000444040 SPANXA1Q9NS26 97 aa11.56□□□□□ -0.56
SHQ1-202ENST00000444040 ITPR3Q14573 2671 aa11.56□□□□□ -0.56
SHQ1-202ENST00000444040 A0A1W2PRX2 142 aa11.56□□□□□ -0.56
SHQ1-202ENST00000444040 CCL24O00175 119 aa11.56□□□□□ -0.56
SHQ1-202ENST00000444040 IGHV3-30-3P0DP02 117 aa11.56□□□□□ -0.56
SHQ1-202ENST00000444040 TLN2Q9Y4G6 2542 aa11.55□□□□□ -0.56
SHQ1-202ENST00000444040 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.55□□□□□ -0.56
SHQ1-202ENST00000444040 IGKV2-29A2NJV5 120 aaPredicted RBP11.55□□□□□ -0.56
SHQ1-202ENST00000444040 STHQ8IWL8 128 aa11.55□□□□□ -0.56
SHQ1-202ENST00000444040 IL17DQ8TAD2 202 aa11.55□□□□□ -0.56
SHQ1-202ENST00000444040 IGHV3-38A0A0C4DH36 116 aa11.55□□□□□ -0.56
SHQ1-202ENST00000444040 SFTA2Q6UW10 78 aa11.55□□□□□ -0.56
SHQ1-202ENST00000444040 LOC107984156A0A0G2JMH3 177 aa11.55□□□□□ -0.56
SHQ1-202ENST00000444040 ARL17AQ8IVW1 177 aa11.55□□□□□ -0.56
SHQ1-202ENST00000444040 EIF4EBP3O60516 100 aaPredicted RBP11.54□□□□□ -0.56
SHQ1-202ENST00000444040 TIMM21Q9BVV7 248 aa11.54□□□□□ -0.56
SHQ1-202ENST00000444040 TRAV8-3A0A0A6YYJ7 113 aa11.54□□□□□ -0.56
SHQ1-202ENST00000444040 A0A0J9YXY3 114 aa11.54□□□□□ -0.56
SHQ1-202ENST00000444040 TINCRA0A1B0GVN0 87 aa11.54□□□□□ -0.56
SHQ1-202ENST00000444040 A4D1N5 150 aa11.54□□□□□ -0.56
SHQ1-202ENST00000444040 EPG5Q9HCE0 2579 aa11.54□□□□□ -0.56
SHQ1-202ENST00000444040 PRO1854Q9UHT4 67 aa11.53□□□□□ -0.56
SHQ1-202ENST00000444040 CUBNO60494 3623 aa11.53□□□□□ -0.56
SHQ1-202ENST00000444040 IGHV1-58A0A0C4DH39 117 aa11.53□□□□□ -0.56
SHQ1-202ENST00000444040 SMCPP49901 116 aaPredicted RBP11.53□□□□□ -0.56
SHQ1-202ENST00000444040 COTL1Q14019 142 aa11.53□□□□□ -0.56
SHQ1-202ENST00000444040 Q6ZUT4 128 aa11.53□□□□□ -0.56
SHQ1-202ENST00000444040 CITED2Q99967 270 aaPredicted RBP11.53□□□□□ -0.56
SHQ1-202ENST00000444040 SONP18583 2426 aaKnown RBP11.52□□□□□ -0.56
SHQ1-202ENST00000444040 KRTAP1-1Q07627 177 aa11.52□□□□□ -0.56
SHQ1-202ENST00000444040 HIST2H2BCQ6DN03 193 aa11.52□□□□□ -0.56
SHQ1-202ENST00000444040 MUSTN1Q8IVN3 82 aa11.52□□□□□ -0.56
SHQ1-202ENST00000444040 CHD6Q8TD26 2715 aa11.52□□□□□ -0.57
SHQ1-202ENST00000444040 IGHV3OR16-12A0A075B7B8 117 aa11.52□□□□□ -0.57
SHQ1-202ENST00000444040 TMEM238C9JI98 176 aa11.52□□□□□ -0.57
SHQ1-202ENST00000444040 PSMB2P49721 201 aa11.52□□□□□ -0.57
SHQ1-202ENST00000444040 LITAFQ99732 161 aa11.52□□□□□ -0.57
SHQ1-202ENST00000444040 ADARB2-AS1A8MUL3 147 aa11.51□□□□□ -0.57
SHQ1-202ENST00000444040 LYRM7Q5U5X0 104 aa11.5□□□□□ -0.57
SHQ1-202ENST00000444040 TMEM263Q8WUH6 116 aaKnown RBP11.5□□□□□ -0.57
SHQ1-202ENST00000444040 VSIG2Q96IQ7 327 aa11.5□□□□□ -0.57
SHQ1-202ENST00000444040 TCL1BO95988 128 aa11.5□□□□□ -0.57
SHQ1-202ENST00000444040 LINC01006Q8NI28 216 aa11.5□□□□□ -0.57
SHQ1-202ENST00000444040 TRGV1A0A0A0MS02 117 aa11.5□□□□□ -0.57
SHQ1-202ENST00000444040 TSSC4Q9Y5U2 329 aaPredicted RBP11.5□□□□□ -0.57
SHQ1-202ENST00000444040 A0A0B4J2C4 111 aa11.49□□□□□ -0.57
SHQ1-202ENST00000444040 IGHV3-33P01772 117 aa11.49□□□□□ -0.57
SHQ1-202ENST00000444040 TRBV20-1A0A075B6N2 111 aa11.48□□□□□ -0.57
SHQ1-202ENST00000444040 J3QR89 54 aa11.48□□□□□ -0.57
SHQ1-202ENST00000444040 INSL3P51460 131 aa11.48□□□□□ -0.57
SHQ1-202ENST00000444040 A8MZ25 164 aa11.48□□□□□ -0.57
SHQ1-202ENST00000444040 SPINK8P0C7L1 97 aa11.48□□□□□ -0.57
SHQ1-202ENST00000444040 C16orf95Q9H693 158 aa11.48□□□□□ -0.57
SHQ1-202ENST00000444040 NDUFA12Q9UI09 145 aa11.48□□□□□ -0.57
SHQ1-202ENST00000444040 GIG44P09565 113 aaPredicted RBP11.47□□□□□ -0.57
SHQ1-202ENST00000444040 Q6ZTI0 123 aa11.47□□□□□ -0.57
SHQ1-202ENST00000444040 NF1P21359 2839 aa11.47□□□□□ -0.57
SHQ1-202ENST00000444040 FLNAP21333 2647 aaKnown RBP11.47□□□□□ -0.57
SHQ1-202ENST00000444040 IGLV5-45A0A087WSX0 123 aa11.46□□□□□ -0.57
SHQ1-202ENST00000444040 RNASE1P07998 156 aaKnown RBP11.46□□□□□ -0.57
SHQ1-202ENST00000444040 ADAMTSL4-AS1Q5T5F5 129 aa11.46□□□□□ -0.57
SHQ1-202ENST00000444040 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.46□□□□□ -0.58
SHQ1-202ENST00000444040 TIRAPP58753 221 aa11.46□□□□□ -0.58
SHQ1-202ENST00000444040 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.46□□□□□ -0.58
SHQ1-202ENST00000444040 ATP6V0E2Q8NHE4 81 aa11.46□□□□□ -0.58
SHQ1-202ENST00000444040 C1QTNF4Q9BXJ3 329 aa11.45□□□□□ -0.58
SHQ1-202ENST00000444040 GEMIN7Q9H840 131 aaKnown RBP11.45□□□□□ -0.58
SHQ1-202ENST00000444040 CDKN2A-AS1Q9UH64 79 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms