RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 MAP6D1Q9H9H5 199 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 DNAH9Q9NYC9 4486 aa10.8□□□□□ -0.68
USP4-203ENST00000415188 H3BUT2 72 aa10.8□□□□□ -0.68
USP4-203ENST00000415188 K7EIL1 84 aa10.8□□□□□ -0.68
USP4-203ENST00000415188 K7EP34 96 aa10.8□□□□□ -0.68
USP4-203ENST00000415188 M0R2P5 195 aa10.8□□□□□ -0.68
USP4-203ENST00000415188 UFSP1Q6NVU6 142 aa10.8□□□□□ -0.68
USP4-203ENST00000415188 OR5A1Q8NGJ0 315 aa10.8□□□□□ -0.68
USP4-203ENST00000415188 DLX4Q92988 240 aaPredicted RBP10.8□□□□□ -0.68
USP4-203ENST00000415188 CST9LQ9H4G1 147 aa10.8□□□□□ -0.68
USP4-203ENST00000415188 IGLV4-69A0A075B6H9 119 aa10.79□□□□□ -0.68
USP4-203ENST00000415188 A0A1W2PPM0 123 aa10.79□□□□□ -0.68
USP4-203ENST00000415188 RBMY1BA6NDE4 496 aaKnown RBP10.79□□□□□ -0.68
USP4-203ENST00000415188 RBMY1EA6NEQ0 496 aaKnown RBP10.79□□□□□ -0.68
USP4-203ENST00000415188 RBMY1DP0C7P1 496 aaKnown RBP10.79□□□□□ -0.68
USP4-203ENST00000415188 RBMY1A1P0DJD3 496 aaKnown RBP10.79□□□□□ -0.68
USP4-203ENST00000415188 RBMY1CP0DJD4 496 aa10.79□□□□□ -0.68
USP4-203ENST00000415188 RBMY1FQ15415 496 aaKnown RBP10.79□□□□□ -0.68
USP4-203ENST00000415188 DUX3Q96PT4 197 aa10.79□□□□□ -0.68
USP4-203ENST00000415188 PRADC1Q9BSG0 188 aa10.79□□□□□ -0.68
USP4-203ENST00000415188 SPXQ9BT56 116 aa10.79□□□□□ -0.68
USP4-203ENST00000415188 TRBV7-3A0A075B6L6 115 aa10.78□□□□□ -0.68
USP4-203ENST00000415188 C11orf86A6NJI1 115 aa10.78□□□□□ -0.68
USP4-203ENST00000415188 RHODO00212 210 aa10.78□□□□□ -0.68
USP4-203ENST00000415188 INSP01308 110 aa10.78□□□□□ -0.68
USP4-203ENST00000415188 FABP2P12104 132 aa10.78□□□□□ -0.68
USP4-203ENST00000415188 FHL3Q13643 280 aa10.78□□□□□ -0.68
USP4-203ENST00000415188 RPL39P62891 51 aaKnown RBP10.77□□□□□ -0.69
USP4-203ENST00000415188 NFE4Q86UQ8 179 aa10.77□□□□□ -0.69
USP4-203ENST00000415188 C20orf203Q8NBC4 194 aa10.77□□□□□ -0.69
USP4-203ENST00000415188 HIST1H4GQ99525 98 aa10.77□□□□□ -0.69
USP4-203ENST00000415188 CRYBA4P53673 196 aa10.76□□□□□ -0.69
USP4-203ENST00000415188 PHLDA1Q8WV24 401 aaPredicted RBP10.76□□□□□ -0.69
USP4-203ENST00000415188 CBY1Q9Y3M2 126 aa10.76□□□□□ -0.69
USP4-203ENST00000415188 A0A1B0GWB2 263 aa10.75□□□□□ -0.69
USP4-203ENST00000415188 CMC4P56277 68 aaPredicted RBP10.75□□□□□ -0.69
USP4-203ENST00000415188 EGFEM1PQ0D2K5 195 aa10.75□□□□□ -0.69
USP4-203ENST00000415188 CD300EQ496F6 205 aaPredicted RBP10.75□□□□□ -0.69
USP4-203ENST00000415188 RAB37Q96AX2 223 aa10.75□□□□□ -0.69
USP4-203ENST00000415188 PYGO1Q9Y3Y4 419 aa10.75□□□□□ -0.69
USP4-203ENST00000415188 ZNF815PA8K554 130 aa10.74□□□□□ -0.69
USP4-203ENST00000415188 DEFB121Q5J5C9 76 aa10.74□□□□□ -0.69
USP4-203ENST00000415188 DNAJC30Q96LL9 226 aa10.74□□□□□ -0.69
USP4-203ENST00000415188 NHP2Q9NX24 153 aaKnown RBP10.74□□□□□ -0.69
USP4-203ENST00000415188 TMEM238LA0A1B0GVL6 79 aa10.74□□□□□ -0.69
USP4-203ENST00000415188 GAGE12BA1L429 117 aa10.74□□□□□ -0.69
USP4-203ENST00000415188 A6NJY4 79 aa10.74□□□□□ -0.69
USP4-203ENST00000415188 P0DMU3 169 aa10.74□□□□□ -0.69
USP4-203ENST00000415188 FAM231AP0DMU4 169 aa10.74□□□□□ -0.69
USP4-203ENST00000415188 FAM231CP0DMU5 169 aa10.74□□□□□ -0.69
USP4-203ENST00000415188 SPCS1Q9Y6A9 102 aa10.74□□□□□ -0.69
USP4-203ENST00000415188 CCL24O00175 119 aa10.73□□□□□ -0.69
USP4-203ENST00000415188 C12orf74Q32Q52 190 aa10.73□□□□□ -0.69
USP4-203ENST00000415188 C11orf72Q8NBR9 251 aa10.73□□□□□ -0.69
USP4-203ENST00000415188 LINC01587Q99440 93 aa10.73□□□□□ -0.69
USP4-203ENST00000415188 TNFRSF18Q9Y5U5 241 aa10.73□□□□□ -0.69
USP4-203ENST00000415188 RNASE8Q8TDE3 154 aaKnown RBP10.72□□□□□ -0.69
USP4-203ENST00000415188 SORL1Q92673 2214 aa10.71□□□□□ -0.69
USP4-203ENST00000415188 RS1O15537 224 aa10.71□□□□□ -0.69
USP4-203ENST00000415188 ODF3L2Q3SX64 289 aa10.71□□□□□ -0.69
USP4-203ENST00000415188 SCGB1D4Q6XE38 83 aa10.71□□□□□ -0.69
USP4-203ENST00000415188 SPANXB1Q9NS25 103 aaPredicted RBP10.71□□□□□ -0.69
USP4-203ENST00000415188 IGLV4-3A0A075B6K6 122 aa10.7□□□□□ -0.7
USP4-203ENST00000415188 IGLL5B9A064 214 aa10.7□□□□□ -0.7
USP4-203ENST00000415188 IGHV3-53P01767 116 aa10.7□□□□□ -0.7
USP4-203ENST00000415188 HTN1P15515 57 aa10.7□□□□□ -0.7
USP4-203ENST00000415188 TMEM170BQ5T4T1 132 aa10.7□□□□□ -0.7
USP4-203ENST00000415188 CFAP126Q5VTH2 177 aa10.7□□□□□ -0.7
USP4-203ENST00000415188 STHQ8IWL8 128 aa10.7□□□□□ -0.7
USP4-203ENST00000415188 VCX2Q9H322 139 aa10.7□□□□□ -0.7
USP4-203ENST00000415188 NACAE9PAV3 2078 aa10.7□□□□□ -0.7
USP4-203ENST00000415188 COL7A1Q02388 2944 aa10.69□□□□□ -0.7
USP4-203ENST00000415188 K7ERJ3 54 aa10.69□□□□□ -0.7
USP4-203ENST00000415188 LEPROTO15243 131 aa10.69□□□□□ -0.7
USP4-203ENST00000415188 OCIAD2Q56VL3 154 aa10.69□□□□□ -0.7
USP4-203ENST00000415188 ZNRF2Q8NHG8 242 aa10.69□□□□□ -0.7
USP4-203ENST00000415188 SPANXA1Q9NS26 97 aa10.69□□□□□ -0.7
USP4-203ENST00000415188 TMEM223A0PJW6 202 aa10.68□□□□□ -0.7
USP4-203ENST00000415188 K7ERU9 68 aa10.68□□□□□ -0.7
USP4-203ENST00000415188 RBX1P62877 108 aa10.68□□□□□ -0.7
USP4-203ENST00000415188 PLEKHB2Q96CS7 222 aa10.68□□□□□ -0.7
USP4-203ENST00000415188 ZNF479Q96JC4 524 aa10.68□□□□□ -0.7
USP4-203ENST00000415188 AMELXQ99217 191 aa10.68□□□□□ -0.7
USP4-203ENST00000415188 FAM110AQ9BQ89 295 aa10.68□□□□□ -0.7
USP4-203ENST00000415188 NAA38Q9BRA0 125 aaKnown RBP10.68□□□□□ -0.7
USP4-203ENST00000415188 J3QQQ9 107 aa10.68□□□□□ -0.7
USP4-203ENST00000415188 LGALS3P17931 250 aaKnown RBP10.68□□□□□ -0.7
USP4-203ENST00000415188 RRN3P1Q2M238 152 aa10.68□□□□□ -0.7
USP4-203ENST00000415188 IL17DQ8TAD2 202 aa10.68□□□□□ -0.7
USP4-203ENST00000415188 A0A0J9YY99 117 aa10.67□□□□□ -0.7
USP4-203ENST00000415188 EMP1P54849 157 aa10.67□□□□□ -0.7
USP4-203ENST00000415188 SRSF9Q13242 221 aaKnown RBP eCLIP10.67□□□□□ -0.7
USP4-203ENST00000415188 KMT2CQ8NEZ4 4911 aaKnown RBP10.66□□□□□ -0.7
USP4-203ENST00000415188 IGHV3-73A0A0B4J1V6 119 aa10.66□□□□□ -0.7
USP4-203ENST00000415188 ZNF22P17026 224 aaPredicted RBP10.66□□□□□ -0.7
USP4-203ENST00000415188 UBE2D1P51668 147 aa10.66□□□□□ -0.7
USP4-203ENST00000415188 B9D2Q9BPU9 175 aa10.66□□□□□ -0.7
USP4-203ENST00000415188 MRPS36P82909 103 aaKnown RBP10.65□□□□□ -0.7
USP4-203ENST00000415188 C9orf66Q5T8R8 295 aa10.65□□□□□ -0.7
USP4-203ENST00000415188 SLC25A29Q8N8R3 303 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms