RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 C20orf203Q8NBC4 194 aa12.8□□□□□ -0.36
TSPAN4-209ENST00000409543 VPS13BQ7Z7G8 4022 aa12.8□□□□□ -0.36
TSPAN4-209ENST00000409543 TRAV26-2A0A0B4J265 109 aa12.79□□□□□ -0.36
TSPAN4-209ENST00000409543 USP17L23D6RBM5 183 aa12.79□□□□□ -0.36
TSPAN4-209ENST00000409543 HLA-DQA1P01909 254 aa12.79□□□□□ -0.36
TSPAN4-209ENST00000409543 SRP19P09132 144 aaKnown RBP12.79□□□□□ -0.36
TSPAN4-209ENST00000409543 REG3AQ06141 175 aa12.79□□□□□ -0.36
TSPAN4-209ENST00000409543 LINC01551Q86U37 167 aa12.79□□□□□ -0.36
TSPAN4-209ENST00000409543 ZNF727A8MUV8 499 aa12.78□□□□□ -0.36
TSPAN4-209ENST00000409543 AMTP48728 403 aa12.78□□□□□ -0.36
TSPAN4-209ENST00000409543 TEX261Q6UWH6 196 aa12.78□□□□□ -0.36
TSPAN4-209ENST00000409543 DEFB104AQ8WTQ1 72 aa12.78□□□□□ -0.36
TSPAN4-209ENST00000409543 UBE2L6O14933 153 aa12.77□□□□□ -0.37
TSPAN4-209ENST00000409543 IGLV4-60A0A075B6I1 120 aa12.76□□□□□ -0.37
TSPAN4-209ENST00000409543 TRAV8-4A0A0B4J246 113 aa12.76□□□□□ -0.37
TSPAN4-209ENST00000409543 TSKUQ8WUA8 353 aa12.76□□□□□ -0.37
TSPAN4-209ENST00000409543 BORCS7Q96B45 105 aa12.76□□□□□ -0.37
TSPAN4-209ENST00000409543 RPL39LQ96EH5 51 aaKnown RBP12.76□□□□□ -0.37
TSPAN4-209ENST00000409543 GFRA4Q9GZZ7 299 aa12.76□□□□□ -0.37
TSPAN4-209ENST00000409543 OSTCQ9NRP0 149 aa12.76□□□□□ -0.37
TSPAN4-209ENST00000409543 FAM231BA6NCW3 169 aa12.75□□□□□ -0.37
TSPAN4-209ENST00000409543 PRSS1P07477 247 aa12.75□□□□□ -0.37
TSPAN4-209ENST00000409543 IGLV10-54A0A075B6I4 117 aa12.74□□□□□ -0.37
TSPAN4-209ENST00000409543 NCR2O95944 276 aa12.74□□□□□ -0.37
TSPAN4-209ENST00000409543 DGAT2L7PQ6IED9 249 aa12.74□□□□□ -0.37
TSPAN4-209ENST00000409543 SCXQ7RTU7 201 aa12.74□□□□□ -0.37
TSPAN4-209ENST00000409543 CHAC1Q9BUX1 264 aa12.74□□□□□ -0.37
TSPAN4-209ENST00000409543 A0A1B0GUT8 65 aa12.73□□□□□ -0.37
TSPAN4-209ENST00000409543 HIGD1CA8MV81 97 aa12.73□□□□□ -0.37
TSPAN4-209ENST00000409543 SDHAF1A6NFY7 115 aa12.72□□□□□ -0.37
TSPAN4-209ENST00000409543 FAM74A3Q4VXF1 159 aa12.72□□□□□ -0.37
TSPAN4-209ENST00000409543 LINC00528Q8N1L1 170 aa12.72□□□□□ -0.37
TSPAN4-209ENST00000409543 CLRN3Q8NCR9 226 aa12.72□□□□□ -0.37
TSPAN4-209ENST00000409543 TRBV6-5A0A0K0K1A5 114 aa12.71□□□□□ -0.37
TSPAN4-209ENST00000409543 PLA2G1BP04054 148 aaKnown RBP12.71□□□□□ -0.37
TSPAN4-209ENST00000409543 TMEM241Q24JQ0 296 aa12.71□□□□□ -0.37
TSPAN4-209ENST00000409543 TMEM191AQ9H0A3 160 aa12.71□□□□□ -0.37
TSPAN4-209ENST00000409543 H7C423 109 aa12.7□□□□□ -0.38
TSPAN4-209ENST00000409543 C9orf163Q8N9P6 203 aa12.7□□□□□ -0.38
TSPAN4-209ENST00000409543 V9GYV3 84 aa12.7□□□□□ -0.38
TSPAN4-209ENST00000409543 FLG2Q5D862 2391 aaPredicted RBP12.69□□□□□ -0.38
TSPAN4-209ENST00000409543 I3L3M4 83 aa12.69□□□□□ -0.38
TSPAN4-209ENST00000409543 APCSP02743 223 aa12.69□□□□□ -0.38
TSPAN4-209ENST00000409543 CIRBP-AS1Q8TBR5 109 aa12.69□□□□□ -0.38
TSPAN4-209ENST00000409543 ISOC2Q96AB3 205 aa12.69□□□□□ -0.38
TSPAN4-209ENST00000409543 C9JQL5 133 aa12.68□□□□□ -0.38
TSPAN4-209ENST00000409543 PMCHP20382 165 aa12.68□□□□□ -0.38
TSPAN4-209ENST00000409543 RPL23P62829 140 aaKnown RBP12.68□□□□□ -0.38
TSPAN4-209ENST00000409543 AMMECR1LQ6DCA0 310 aa12.68□□□□□ -0.38
TSPAN4-209ENST00000409543 RNF185Q96GF1 192 aa12.68□□□□□ -0.38
TSPAN4-209ENST00000409543 DMBT1Q9UGM3 2413 aaPredicted RBP12.68□□□□□ -0.38
TSPAN4-209ENST00000409543 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.67□□□□□ -0.38
TSPAN4-209ENST00000409543 IGKV2-29A2NJV5 120 aaPredicted RBP12.67□□□□□ -0.38
TSPAN4-209ENST00000409543 GAS8-AS1O95177 125 aa12.67□□□□□ -0.38
TSPAN4-209ENST00000409543 RAB4AP20338 218 aa12.67□□□□□ -0.38
TSPAN4-209ENST00000409543 RIGQ13278 110 aa12.67□□□□□ -0.38
TSPAN4-209ENST00000409543 PEA15Q15121 130 aa12.67□□□□□ -0.38
TSPAN4-209ENST00000409543 MRAP2Q96G30 205 aa12.67□□□□□ -0.38
TSPAN4-209ENST00000409543 ST20Q9HBF5 79 aa12.67□□□□□ -0.38
TSPAN4-209ENST00000409543 NUP35Q8NFH5 326 aa12.66□□□□□ -0.38
TSPAN4-209ENST00000409543 SMDT1Q9H4I9 107 aa12.66□□□□□ -0.38
TSPAN4-209ENST00000409543 NAT8Q9UHE5 227 aa12.66□□□□□ -0.38
TSPAN4-209ENST00000409543 MYCBP2O75592 4640 aa12.65□□□□□ -0.38
TSPAN4-209ENST00000409543 hDV102S1A0JD36 115 aa12.65□□□□□ -0.38
TSPAN4-209ENST00000409543 FGF6P10767 208 aa12.65□□□□□ -0.38
TSPAN4-209ENST00000409543 CNBPP62633 177 aaKnown RBP12.65□□□□□ -0.38
TSPAN4-209ENST00000409543 SRSF3P84103 164 aaKnown RBP12.65□□□□□ -0.38
TSPAN4-209ENST00000409543 RNASEKQ6P5S7 137 aaKnown RBP12.65□□□□□ -0.38
TSPAN4-209ENST00000409543 AMN1Q8IY45 258 aa12.65□□□□□ -0.38
TSPAN4-209ENST00000409543 NAT8BQ9UHF3 227 aa12.65□□□□□ -0.38
TSPAN4-209ENST00000409543 TSHBP01222 138 aa12.64□□□□□ -0.39
TSPAN4-209ENST00000409543 ESDP10768 282 aa12.64□□□□□ -0.39
TSPAN4-209ENST00000409543 ZNF25P17030 456 aaPredicted RBP12.64□□□□□ -0.39
TSPAN4-209ENST00000409543 POLR2KP53803 58 aaKnown RBP12.64□□□□□ -0.39
TSPAN4-209ENST00000409543 ADIRFQ15847 76 aa12.64□□□□□ -0.39
TSPAN4-209ENST00000409543 HERC1Q15751 4861 aa12.63□□□□□ -0.39
TSPAN4-209ENST00000409543 IGKV3OR2-268A0A0C4DH90 116 aa12.63□□□□□ -0.39
TSPAN4-209ENST00000409543 GAGE12HA6NDE8 117 aa12.63□□□□□ -0.39
TSPAN4-209ENST00000409543 RPS10P46783 165 aaKnown RBP12.63□□□□□ -0.39
TSPAN4-209ENST00000409543 SDIM1Q6ZPB5 146 aa12.63□□□□□ -0.39
TSPAN4-209ENST00000409543 AP5S1Q9NUS5 200 aa12.63□□□□□ -0.39
TSPAN4-209ENST00000409543 TRBV27A0A0K0K1C4 114 aa12.62□□□□□ -0.39
TSPAN4-209ENST00000409543 TMEM242Q9NWH2 141 aa12.62□□□□□ -0.39
TSPAN4-209ENST00000409543 SMIM27A0A1W2PRY6 76 aa12.61□□□□□ -0.39
TSPAN4-209ENST00000409543 CFAP161Q6P656 301 aa12.61□□□□□ -0.39
TSPAN4-209ENST00000409543 CHCHD10Q8WYQ3 142 aaPredicted RBP12.61□□□□□ -0.39
TSPAN4-209ENST00000409543 TMEM101Q96IK0 257 aa12.61□□□□□ -0.39
TSPAN4-209ENST00000409543 BTF3L4Q96K17 158 aa12.61□□□□□ -0.39
TSPAN4-209ENST00000409543 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.6□□□□□ -0.39
TSPAN4-209ENST00000409543 PPP1R17O96001 155 aa12.6□□□□□ -0.39
TSPAN4-209ENST00000409543 OR5A1Q8NGJ0 315 aa12.6□□□□□ -0.39
TSPAN4-209ENST00000409543 VCYO14598 125 aa12.59□□□□□ -0.39
TSPAN4-209ENST00000409543 SLPIP03973 132 aa12.59□□□□□ -0.39
TSPAN4-209ENST00000409543 KRTAP10-4P60372 401 aaPredicted RBP12.59□□□□□ -0.39
TSPAN4-209ENST00000409543 C15orf56Q8N910 161 aa12.59□□□□□ -0.39
TSPAN4-209ENST00000409543 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.59□□□□□ -0.39
TSPAN4-209ENST00000409543 IGHV3-64A0A075B6Q5 118 aa12.58□□□□□ -0.4
TSPAN4-209ENST00000409543 SMKR1H3BMG3 65 aa12.58□□□□□ -0.4
TSPAN4-209ENST00000409543 MRPL52Q86TS9 123 aaKnown RBP12.58□□□□□ -0.4
TSPAN4-209ENST00000409543 NRACQ8N912 160 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms