RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 ASCL2Q99929 193 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 SLC50A1Q9BRV3 221 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 SMIM2Q9BVW6 85 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 RPUSD1Q9UJJ7 312 aaKnown RBP4.1□□□□□ -1.75
CLK1-202ENST00000409403 HERC2O95714 4834 aa4.09□□□□□ -1.75
CLK1-202ENST00000409403 VWFP04275 2813 aa4.09□□□□□ -1.75
CLK1-202ENST00000409403 CR1P17927 2039 aa4.09□□□□□ -1.75
CLK1-202ENST00000409403 MRPS12O15235 138 aaKnown RBP4.09□□□□□ -1.76
CLK1-202ENST00000409403 LGALS3P17931 250 aaKnown RBP4.09□□□□□ -1.76
CLK1-202ENST00000409403 C17orf58Q2M2W7 97 aa4.09□□□□□ -1.76
CLK1-202ENST00000409403 FAM201AQ5SY85 155 aa4.09□□□□□ -1.76
CLK1-202ENST00000409403 SFTA2Q6UW10 78 aa4.09□□□□□ -1.76
CLK1-202ENST00000409403 ZNF826PQ6ZT77 177 aa4.09□□□□□ -1.76
CLK1-202ENST00000409403 POM121L12Q8N7R1 296 aa4.09□□□□□ -1.76
CLK1-202ENST00000409403 KLF14Q8TD94 323 aaPredicted RBP4.09□□□□□ -1.76
CLK1-202ENST00000409403 DCTN5Q9BTE1 182 aa4.09□□□□□ -1.76
CLK1-202ENST00000409403 Q9H8V8 135 aa4.09□□□□□ -1.76
CLK1-202ENST00000409403 EDA2RQ9HAV5 297 aa4.09□□□□□ -1.76
CLK1-202ENST00000409403 DYNLRB1Q9NP97 96 aa4.09□□□□□ -1.76
CLK1-202ENST00000409403 AGRNO00468 2067 aa4.08□□□□□ -1.76
CLK1-202ENST00000409403 IGKV1D-17A0A075B6S4 117 aa4.08□□□□□ -1.76
CLK1-202ENST00000409403 TRAV17A0A0B4J275 112 aa4.08□□□□□ -1.76
CLK1-202ENST00000409403 TEX49A0A1B0GTD5 131 aa4.08□□□□□ -1.76
CLK1-202ENST00000409403 RBAKDNA6NC62 111 aa4.08□□□□□ -1.76
CLK1-202ENST00000409403 C11orf86A6NJI1 115 aa4.08□□□□□ -1.76
CLK1-202ENST00000409403 OOSP1A8MZH6 123 aa4.08□□□□□ -1.76
CLK1-202ENST00000409403 IGKV1-16P04430 117 aa4.08□□□□□ -1.76
CLK1-202ENST00000409403 RPL27AP46776 148 aaKnown RBP4.08□□□□□ -1.76
CLK1-202ENST00000409403 TRPT1Q86TN4 253 aaKnown RBP4.08□□□□□ -1.76
CLK1-202ENST00000409403 C8orf31Q8N9H6 132 aa4.08□□□□□ -1.76
CLK1-202ENST00000409403 TMEM263Q8WUH6 116 aaKnown RBP4.08□□□□□ -1.76
CLK1-202ENST00000409403 METTL26Q96S19 204 aa4.08□□□□□ -1.76
CLK1-202ENST00000409403 IGHV4-4A0A075B6R2 117 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 A0A0J9YX75 114 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 LOC107984640A0A0U1RRK4 108 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 NDUFC2-KCTD14E9PQ53 114 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 H3BTX0 84 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 M0R381 172 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 M0R3E3 92 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 OVOL1O14753 267 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 IGHV3-13P01766 116 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 CNTFRP26992 372 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 EFNA4P52798 201 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 DLX1P56177 255 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 ERCC8Q13216 396 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 PLEKHB2Q96CS7 222 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 TMEM141Q96I45 108 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 PRO0628Q9UI54 55 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 LINC00527Q9UJ94 153 aa4.07□□□□□ -1.76
CLK1-202ENST00000409403 HEATR1Q9H583 2144 aaKnown RBP4.07□□□□□ -1.76
CLK1-202ENST00000409403 IGHV5-10-1A0A0J9YXX1 117 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 SDHAF1A6NFY7 115 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 IGHV4-38-2P0DP08 117 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 ZNF672Q499Z4 452 aaPredicted RBP4.06□□□□□ -1.76
CLK1-202ENST00000409403 LINC00311Q8N616 119 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 MRPL36Q9P0J6 103 aaKnown RBP4.06□□□□□ -1.76
CLK1-202ENST00000409403 IGHV3-64DA0A0J9YX35 117 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 J3QQQ9 107 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 LEPROTO15243 131 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 CRIP2P52943 208 aaPredicted RBP4.06□□□□□ -1.76
CLK1-202ENST00000409403 C2orf66Q6UXQ4 117 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 C5orf38Q86SI9 138 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 C9orf106Q8NAJ2 232 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 LEAP2Q969E1 77 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 DPH3Q96FX2 82 aa4.06□□□□□ -1.76
CLK1-202ENST00000409403 H7C423 109 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 LST1O00453 97 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 TSHBP01222 138 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 INAFM2P0DMQ5 153 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 HIST1H4AP62805 103 aaKnown RBP4.05□□□□□ -1.76
CLK1-202ENST00000409403 CCL8P80075 99 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 SPANXN1Q5VSR9 72 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 FAM216BQ8N7L0 139 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 C3orf56Q8N813 242 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 DAND5Q8N907 189 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 COPS9Q8WXC6 57 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 TIMM17AQ99595 171 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 ICOSQ9Y6W8 199 aa4.05□□□□□ -1.76
CLK1-202ENST00000409403 IGLV9-49A0A0B4J1Y8 123 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 TRAV13-1A0A0B4J241 112 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 ATP6V0E1O15342 81 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 NDUFC2O95298 119 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 IGLV2-23P01705 113 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 IGHV3-48P01763 117 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 TFF1P04155 84 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 RPL36AP83881 106 aaKnown RBP4.04□□□□□ -1.76
CLK1-202ENST00000409403 RPL18AQ02543 176 aaKnown RBP4.04□□□□□ -1.76
CLK1-202ENST00000409403 C10orf55Q5SWW7 151 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 HCP5Q6MZN7 132 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 ZNRF1Q8ND25 227 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 AGPAT4-IT1Q9H0P7 198 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 ABCA1O95477 2261 aa4.04□□□□□ -1.76
CLK1-202ENST00000409403 IGKV2-40A0A087WW87 121 aaPredicted RBP4.03□□□□□ -1.76
CLK1-202ENST00000409403 I3L2K1 104 aa4.03□□□□□ -1.76
CLK1-202ENST00000409403 LHBP01229 141 aa4.03□□□□□ -1.76
CLK1-202ENST00000409403 IGKV2D-40P01614 121 aaPredicted RBP4.03□□□□□ -1.76
CLK1-202ENST00000409403 IGKV3-15P01624 115 aa4.03□□□□□ -1.76
CLK1-202ENST00000409403 IGHV4-31P0DP07 118 aa4.03□□□□□ -1.76
CLK1-202ENST00000409403 GATA1P15976 413 aaPredicted RBP4.03□□□□□ -1.76
CLK1-202ENST00000409403 MAGEA5P43359 124 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms