RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SBSPONQ8IVN8 264 aa15.42■□□□□ 0.06
CTCF-202ENST00000401394 GNLYP22749 145 aa15.41■□□□□ 0.06
CTCF-202ENST00000401394 A0A0J9YX75 114 aa15.41■□□□□ 0.06
CTCF-202ENST00000401394 LEPROTO15243 131 aa15.41■□□□□ 0.06
CTCF-202ENST00000401394 CLEC2BQ92478 149 aa15.4■□□□□ 0.06
CTCF-202ENST00000401394 TEX15Q9BXT5 2789 aa15.4■□□□□ 0.06
CTCF-202ENST00000401394 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.4■□□□□ 0.06
CTCF-202ENST00000401394 IGKV2-29A2NJV5 120 aaPredicted RBP15.4■□□□□ 0.06
CTCF-202ENST00000401394 SS18L2Q9UHA2 77 aa15.4■□□□□ 0.06
CTCF-202ENST00000401394 IGHV1OR15-1A0A075B7D0 117 aa15.39■□□□□ 0.05
CTCF-202ENST00000401394 DEFB136Q30KP8 78 aa15.39■□□□□ 0.05
CTCF-202ENST00000401394 CD28P10747 220 aa15.39■□□□□ 0.05
CTCF-202ENST00000401394 ID1P41134 155 aa15.39■□□□□ 0.05
CTCF-202ENST00000401394 ZNF469Q96JG9 3925 aaPredicted RBP15.39■□□□□ 0.05
CTCF-202ENST00000401394 C18orf65Q6ZTR6 163 aa15.39■□□□□ 0.05
CTCF-202ENST00000401394 TRBV6-5A0A0K0K1A5 114 aa15.38■□□□□ 0.05
CTCF-202ENST00000401394 RPL32P62910 135 aaKnown RBP15.37■□□□□ 0.05
CTCF-202ENST00000401394 LITAFQ99732 161 aa15.37■□□□□ 0.05
CTCF-202ENST00000401394 I3L3M4 83 aa15.37■□□□□ 0.05
CTCF-202ENST00000401394 ANAPC13Q9BS18 74 aa15.37■□□□□ 0.05
CTCF-202ENST00000401394 ZNF625Q96I27 306 aaPredicted RBP15.36■□□□□ 0.05
CTCF-202ENST00000401394 NAV2Q8IVL1 2488 aa15.36■□□□□ 0.05
CTCF-202ENST00000401394 NSUN5P1Q3KNT7 163 aa15.36■□□□□ 0.05
CTCF-202ENST00000401394 LYRM7Q5U5X0 104 aa15.36■□□□□ 0.05
CTCF-202ENST00000401394 LINC01620Q4KN68 170 aa15.36■□□□□ 0.05
CTCF-202ENST00000401394 ANKRD17O75179 2603 aaKnown RBP15.35■□□□□ 0.05
CTCF-202ENST00000401394 M0R2P5 195 aa15.35■□□□□ 0.05
CTCF-202ENST00000401394 NHLRC4P0CG21 123 aaPredicted RBP15.35■□□□□ 0.05
CTCF-202ENST00000401394 CFHR3Q02985 330 aa15.35■□□□□ 0.05
CTCF-202ENST00000401394 LRRK2Q5S007 2527 aa15.35■□□□□ 0.05
CTCF-202ENST00000401394 NBPF19A0A087WUL8 3843 aa15.35■□□□□ 0.05
CTCF-202ENST00000401394 TIMM21Q9BVV7 248 aa15.35■□□□□ 0.05
CTCF-202ENST00000401394 B5MCH6 92 aa15.33■□□□□ 0.05
CTCF-202ENST00000401394 ATP5J2P56134 94 aa15.33■□□□□ 0.05
CTCF-202ENST00000401394 PSMB8P28062 276 aa15.33■□□□□ 0.04
CTCF-202ENST00000401394 K7EQG2 157 aa15.33■□□□□ 0.04
CTCF-202ENST00000401394 DEFB112Q30KQ8 113 aa15.33■□□□□ 0.04
CTCF-202ENST00000401394 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.33■□□□□ 0.04
CTCF-202ENST00000401394 PRORYQ9H606 182 aa15.33■□□□□ 0.04
CTCF-202ENST00000401394 NDUFA7O95182 113 aa15.32■□□□□ 0.04
CTCF-202ENST00000401394 SNRPD3P62318 126 aaKnown RBP15.32■□□□□ 0.04
CTCF-202ENST00000401394 ZFAND6Q6FIF0 208 aa15.32■□□□□ 0.04
CTCF-202ENST00000401394 TRBV7-9A0A0J9YWB2 115 aa15.32■□□□□ 0.04
CTCF-202ENST00000401394 TEX29Q8N6K0 151 aa15.32■□□□□ 0.04
CTCF-202ENST00000401394 NDUFA12Q9UI09 145 aa15.32■□□□□ 0.04
CTCF-202ENST00000401394 TTC32Q5I0X7 151 aa15.31■□□□□ 0.04
CTCF-202ENST00000401394 PIMREGQ9BSJ6 248 aa15.31■□□□□ 0.04
CTCF-202ENST00000401394 C10orf105Q8TEF2 133 aa15.31■□□□□ 0.04
CTCF-202ENST00000401394 CCL19Q99731 98 aa15.31■□□□□ 0.04
CTCF-202ENST00000401394 DOPEY1Q5JWR5 2465 aa15.31■□□□□ 0.04
CTCF-202ENST00000401394 RHOHQ15669 191 aa15.3■□□□□ 0.04
CTCF-202ENST00000401394 CITED1Q99966 193 aa15.3■□□□□ 0.04
CTCF-202ENST00000401394 IGSF10Q6WRI0 2623 aa15.3■□□□□ 0.04
CTCF-202ENST00000401394 A0A0B4J2C4 111 aa15.3■□□□□ 0.04
CTCF-202ENST00000401394 ODF3Q96PU9 254 aa15.3■□□□□ 0.04
CTCF-202ENST00000401394 RBMY1BA6NDE4 496 aaKnown RBP15.29■□□□□ 0.04
CTCF-202ENST00000401394 RBMY1EA6NEQ0 496 aaKnown RBP15.29■□□□□ 0.04
CTCF-202ENST00000401394 MSMBP08118 114 aa15.29■□□□□ 0.04
CTCF-202ENST00000401394 RBMY1DP0C7P1 496 aaKnown RBP15.29■□□□□ 0.04
CTCF-202ENST00000401394 DEFB131AP59861 70 aa15.29■□□□□ 0.04
CTCF-202ENST00000401394 LINC00467Q9BRT7 94 aa15.29■□□□□ 0.04
CTCF-202ENST00000401394 H7C423 109 aa15.28■□□□□ 0.04
CTCF-202ENST00000401394 CCDC168Q8NDH2 2452 aa15.28■□□□□ 0.04
CTCF-202ENST00000401394 CCDC179H3BU77 68 aa15.28■□□□□ 0.04
CTCF-202ENST00000401394 ATXN8Q156A1 80 aa15.28■□□□□ 0.04
CTCF-202ENST00000401394 C3orf56Q8N813 242 aa15.28■□□□□ 0.04
CTCF-202ENST00000401394 H3BUA1 57 aa15.27■□□□□ 0.04
CTCF-202ENST00000401394 K7EMT4 169 aa15.27■□□□□ 0.04
CTCF-202ENST00000401394 SLURP1P55000 103 aa15.27■□□□□ 0.04
CTCF-202ENST00000401394 C2orf82Q6UX34 121 aa15.27■□□□□ 0.04
CTCF-202ENST00000401394 ICOSQ9Y6W8 199 aa15.27■□□□□ 0.04
CTCF-202ENST00000401394 HOXD3P31249 432 aaPredicted RBP15.27■□□□□ 0.03
CTCF-202ENST00000401394 CDKN2A-AS1Q9UH64 79 aa15.27■□□□□ 0.03
CTCF-202ENST00000401394 PIEZO1Q92508 2521 aa15.26■□□□□ 0.03
CTCF-202ENST00000401394 BRI3O95415 125 aa15.26■□□□□ 0.03
CTCF-202ENST00000401394 COX6A2Q02221 97 aa15.26■□□□□ 0.03
CTCF-202ENST00000401394 TNFRSF18Q9Y5U5 241 aa15.26■□□□□ 0.03
CTCF-202ENST00000401394 C15orf53Q8NAA6 179 aa15.25■□□□□ 0.03
CTCF-202ENST00000401394 SNCGO76070 127 aa15.25■□□□□ 0.03
CTCF-202ENST00000401394 CHCHD7Q9BUK0 85 aa15.25■□□□□ 0.03
CTCF-202ENST00000401394 MRPS36P82909 103 aaKnown RBP15.24■□□□□ 0.03
CTCF-202ENST00000401394 GAGE2BQ13066 116 aa15.24■□□□□ 0.03
CTCF-202ENST00000401394 GAGE2EQ4V326 116 aa15.24■□□□□ 0.03
CTCF-202ENST00000401394 GAGE2DQ9UEU5 116 aa15.24■□□□□ 0.03
CTCF-202ENST00000401394 IGHV1-58A0A0C4DH39 117 aa15.24■□□□□ 0.03
CTCF-202ENST00000401394 VSIG2Q96IQ7 327 aa15.23■□□□□ 0.03
CTCF-202ENST00000401394 IGHV3OR16-12A0A075B7B8 117 aa15.23■□□□□ 0.03
CTCF-202ENST00000401394 TRAV8-4A0A0B4J246 113 aa15.23■□□□□ 0.03
CTCF-202ENST00000401394 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.22■□□□□ 0.03
CTCF-202ENST00000401394 TRBV10-2A0A0K0K1G8 114 aa15.22■□□□□ 0.03
CTCF-202ENST00000401394 RPL13AP40429 203 aaKnown RBP15.22■□□□□ 0.03
CTCF-202ENST00000401394 UBE2D4Q9Y2X8 147 aa15.22■□□□□ 0.03
CTCF-202ENST00000401394 H3BMM0 161 aa15.21■□□□□ 0.03
CTCF-202ENST00000401394 NDUFV3P56181 108 aaKnown RBP15.21■□□□□ 0.03
CTCF-202ENST00000401394 UBE2WQ96B02 151 aa15.21■□□□□ 0.03
CTCF-202ENST00000401394 TMEM262E9PQX1 116 aa15.21■□□□□ 0.02
CTCF-202ENST00000401394 TRBV30A0A0K0K1B3 111 aa15.2■□□□□ 0.02
CTCF-202ENST00000401394 Q8N2B8 174 aa15.19■□□□□ 0.02
CTCF-202ENST00000401394 FN1P02751 2386 aaKnown RBP15.19■□□□□ 0.02
CTCF-202ENST00000401394 SETXQ7Z333 2677 aaKnown RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms