RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 TMEM223A0PJW6 202 aa12.13□□□□□ -0.47
NUP50-202ENST00000396096 GAGE12BA1L429 117 aa12.13□□□□□ -0.47
NUP50-202ENST00000396096 IGLV1-51P01701 117 aa12.13□□□□□ -0.47
NUP50-202ENST00000396096 OR5A1Q8NGJ0 315 aa12.13□□□□□ -0.47
NUP50-202ENST00000396096 ANK3Q12955 4377 aaKnown RBP12.13□□□□□ -0.47
NUP50-202ENST00000396096 TSPEAR-AS2P59090 65 aa12.12□□□□□ -0.47
NUP50-202ENST00000396096 RNASE8Q8TDE3 154 aaKnown RBP12.12□□□□□ -0.47
NUP50-202ENST00000396096 CHCHD7Q9BUK0 85 aa12.12□□□□□ -0.47
NUP50-202ENST00000396096 Q9UF83 564 aa12.12□□□□□ -0.47
NUP50-202ENST00000396096 SPCS1Q9Y6A9 102 aa12.12□□□□□ -0.47
NUP50-202ENST00000396096 SAP30O75446 220 aa12.12□□□□□ -0.47
NUP50-202ENST00000396096 FOSL1P15407 271 aa12.12□□□□□ -0.47
NUP50-202ENST00000396096 SCGB1D4Q6XE38 83 aa12.12□□□□□ -0.47
NUP50-202ENST00000396096 SPANXA1Q9NS26 97 aa12.12□□□□□ -0.47
NUP50-202ENST00000396096 A0A0J9YY99 117 aa12.11□□□□□ -0.47
NUP50-202ENST00000396096 IGLL5B9A064 214 aa12.11□□□□□ -0.47
NUP50-202ENST00000396096 LEPROTO15243 131 aa12.11□□□□□ -0.47
NUP50-202ENST00000396096 ZNF22P17026 224 aaPredicted RBP12.11□□□□□ -0.47
NUP50-202ENST00000396096 SPANXB1Q9NS25 103 aaPredicted RBP12.11□□□□□ -0.47
NUP50-202ENST00000396096 J3QQQ9 107 aa12.1□□□□□ -0.47
NUP50-202ENST00000396096 TMEM263Q8WUH6 116 aaKnown RBP12.1□□□□□ -0.47
NUP50-202ENST00000396096 WNK1Q9H4A3 2382 aa12.1□□□□□ -0.47
NUP50-202ENST00000396096 C19orf73Q9NVV2 129 aa12.1□□□□□ -0.47
NUP50-202ENST00000396096 ACANP16112 2415 aa12.09□□□□□ -0.47
NUP50-202ENST00000396096 A0A0J9YXV3 536 aa12.09□□□□□ -0.47
NUP50-202ENST00000396096 GIG44P09565 113 aaPredicted RBP12.09□□□□□ -0.47
NUP50-202ENST00000396096 MRPS36P82909 103 aaKnown RBP12.09□□□□□ -0.47
NUP50-202ENST00000396096 UBE2D4Q9Y2X8 147 aa12.09□□□□□ -0.47
NUP50-202ENST00000396096 NF1P21359 2839 aa12.09□□□□□ -0.47
NUP50-202ENST00000396096 ITPR2Q14571 2701 aa12.08□□□□□ -0.48
NUP50-202ENST00000396096 TMEM238LA0A1B0GVL6 79 aa12.08□□□□□ -0.48
NUP50-202ENST00000396096 A6NJY4 79 aa12.08□□□□□ -0.48
NUP50-202ENST00000396096 HELZ2Q9BYK8 2649 aaKnown RBP12.08□□□□□ -0.48
NUP50-202ENST00000396096 UNC79Q9P2D8 2635 aa12.08□□□□□ -0.48
NUP50-202ENST00000396096 IGHV3OR16-12A0A075B7B8 117 aa12.08□□□□□ -0.48
NUP50-202ENST00000396096 LGALS3P17931 250 aaKnown RBP12.08□□□□□ -0.48
NUP50-202ENST00000396096 COTL1Q14019 142 aa12.08□□□□□ -0.48
NUP50-202ENST00000396096 SLC25A29Q8N8R3 303 aa12.08□□□□□ -0.48
NUP50-202ENST00000396096 TRGV1A0A0A0MS02 117 aa12.07□□□□□ -0.48
NUP50-202ENST00000396096 UBE2D1P51668 147 aa12.07□□□□□ -0.48
NUP50-202ENST00000396096 SRSF9Q13242 221 aaKnown RBP eCLIP12.07□□□□□ -0.48
NUP50-202ENST00000396096 RRN3P1Q2M238 152 aa12.07□□□□□ -0.48
NUP50-202ENST00000396096 DAZ2Q13117 558 aaKnown RBP12.06□□□□□ -0.48
NUP50-202ENST00000396096 ZNF479Q96JC4 524 aa12.06□□□□□ -0.48
NUP50-202ENST00000396096 TRAV4A0A0B4J268 109 aa12.06□□□□□ -0.48
NUP50-202ENST00000396096 TRBV10-1A0A0K0K1A3 114 aa12.06□□□□□ -0.48
NUP50-202ENST00000396096 OCIAD2Q56VL3 154 aa12.06□□□□□ -0.48
NUP50-202ENST00000396096 TIMM21Q9BVV7 248 aa12.06□□□□□ -0.48
NUP50-202ENST00000396096 RBX1P62877 108 aa12.05□□□□□ -0.48
NUP50-202ENST00000396096 CEMP1Q6PRD7 247 aaPredicted RBP12.05□□□□□ -0.48
NUP50-202ENST00000396096 TINCRA0A1B0GVN0 87 aa12.04□□□□□ -0.48
NUP50-202ENST00000396096 Q6ZTI0 123 aa12.04□□□□□ -0.48
NUP50-202ENST00000396096 NDUFA11Q86Y39 141 aa12.04□□□□□ -0.48
NUP50-202ENST00000396096 C1QTNF4Q9BXJ3 329 aa12.04□□□□□ -0.48
NUP50-202ENST00000396096 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.04□□□□□ -0.48
NUP50-202ENST00000396096 IGHV3-38A0A0C4DH36 116 aa12.04□□□□□ -0.48
NUP50-202ENST00000396096 IGKV2-29A2NJV5 120 aaPredicted RBP12.04□□□□□ -0.48
NUP50-202ENST00000396096 IGHV3-30P01768 117 aa12.04□□□□□ -0.48
NUP50-202ENST00000396096 IGHV3-30-5P0DP03 117 aa12.04□□□□□ -0.48
NUP50-202ENST00000396096 C16orf74Q96GX8 76 aa12.04□□□□□ -0.48
NUP50-202ENST00000396096 SMR3AQ99954 134 aa12.04□□□□□ -0.48
NUP50-202ENST00000396096 PLAC8L1A1L4L8 177 aa12.03□□□□□ -0.48
NUP50-202ENST00000396096 K7EQD1 137 aa12.03□□□□□ -0.48
NUP50-202ENST00000396096 CSNK1G2-AS1Q8NCQ2 148 aa12.03□□□□□ -0.48
NUP50-202ENST00000396096 WFDC10AQ9H1F0 79 aa12.03□□□□□ -0.48
NUP50-202ENST00000396096 MTORP42345 2549 aa12.02□□□□□ -0.49
NUP50-202ENST00000396096 KRTAP10-3P60369 221 aa12.02□□□□□ -0.49
NUP50-202ENST00000396096 Q6ZUT4 128 aa12.02□□□□□ -0.49
NUP50-202ENST00000396096 CBY1Q9Y3M2 126 aa12.02□□□□□ -0.49
NUP50-202ENST00000396096 CUBNO60494 3623 aa12.01□□□□□ -0.49
NUP50-202ENST00000396096 CIDEAO60543 219 aa12.01□□□□□ -0.49
NUP50-202ENST00000396096 LY6G6DO95868 133 aa12.01□□□□□ -0.49
NUP50-202ENST00000396096 RPL36AP83881 106 aaKnown RBP12.01□□□□□ -0.49
NUP50-202ENST00000396096 RPL36ALQ969Q0 106 aaKnown RBP12.01□□□□□ -0.49
NUP50-202ENST00000396096 OVOL2Q9BRP0 275 aa12.01□□□□□ -0.49
NUP50-202ENST00000396096 IGHV3-30-3P0DP02 117 aa12□□□□□ -0.49
NUP50-202ENST00000396096 RPL35AP18077 110 aaKnown RBP12□□□□□ -0.49
NUP50-202ENST00000396096 DAZ4Q86SG3 579 aaKnown RBP12□□□□□ -0.49
NUP50-202ENST00000396096 NOP10Q9NPE3 64 aaKnown RBP12□□□□□ -0.49
NUP50-202ENST00000396096 DAZ3Q9NR90 486 aaKnown RBP12□□□□□ -0.49
NUP50-202ENST00000396096 GCN1Q92616 2671 aaKnown RBP12□□□□□ -0.49
NUP50-202ENST00000396096 IGHV1-58A0A0C4DH39 117 aa12□□□□□ -0.49
NUP50-202ENST00000396096 UBE2D3P61077 147 aa12□□□□□ -0.49
NUP50-202ENST00000396096 UBE2D2P62837 147 aa12□□□□□ -0.49
NUP50-202ENST00000396096 RNASE13Q5GAN3 156 aaKnown RBP12□□□□□ -0.49
NUP50-202ENST00000396096 K7ERU9 68 aa11.99□□□□□ -0.49
NUP50-202ENST00000396096 LINC00482Q8N8I6 264 aa11.99□□□□□ -0.49
NUP50-202ENST00000396096 PGPEP1Q9NXJ5 209 aa11.99□□□□□ -0.49
NUP50-202ENST00000396096 IGHV3-64A0A075B6Q5 118 aa11.98□□□□□ -0.49
NUP50-202ENST00000396096 TIRAPP58753 221 aa11.98□□□□□ -0.49
NUP50-202ENST00000396096 C10orf126Q8N4M7 172 aa11.98□□□□□ -0.49
NUP50-202ENST00000396096 CSDC2Q9Y534 153 aaKnown RBP11.98□□□□□ -0.49
NUP50-202ENST00000396096 SETXQ7Z333 2677 aaKnown RBP11.98□□□□□ -0.49
NUP50-202ENST00000396096 IGLV5-45A0A087WSX0 123 aa11.97□□□□□ -0.49
NUP50-202ENST00000396096 SBSPONQ8IVN8 264 aa11.97□□□□□ -0.49
NUP50-202ENST00000396096 A0A0J9YXY3 114 aa11.97□□□□□ -0.49
NUP50-202ENST00000396096 TMEM238C9JI98 176 aa11.97□□□□□ -0.49
NUP50-202ENST00000396096 FAM19A3Q7Z5A8 133 aa11.97□□□□□ -0.49
NUP50-202ENST00000396096 VSIG2Q96IQ7 327 aa11.97□□□□□ -0.49
NUP50-202ENST00000396096 HIVEP2P31629 2446 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms