RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 VCYO14598 125 aa13.11□□□□□ -0.31
SQSTM1-202ENST00000389805 PPP1R17O96001 155 aa13.11□□□□□ -0.31
SQSTM1-202ENST00000389805 TMEM141Q96I45 108 aa13.11□□□□□ -0.31
SQSTM1-202ENST00000389805 OVOL1O14753 267 aa13.1□□□□□ -0.31
SQSTM1-202ENST00000389805 KIF25-AS1Q9Y6Z4 181 aa13.1□□□□□ -0.31
SQSTM1-202ENST00000389805 ZNF469Q96JG9 3925 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-202ENST00000389805 A0A0J9YXV3 536 aa13.1□□□□□ -0.31
SQSTM1-202ENST00000389805 P0DMU3 169 aa13.1□□□□□ -0.31
SQSTM1-202ENST00000389805 FAM231AP0DMU4 169 aa13.1□□□□□ -0.31
SQSTM1-202ENST00000389805 FAM231CP0DMU5 169 aa13.1□□□□□ -0.31
SQSTM1-202ENST00000389805 A0A0B4J2C4 111 aa13.09□□□□□ -0.31
SQSTM1-202ENST00000389805 TRBV10-2A0A0K0K1G8 114 aa13.09□□□□□ -0.31
SQSTM1-202ENST00000389805 TIMM17AQ99595 171 aa13.09□□□□□ -0.31
SQSTM1-202ENST00000389805 CLEC2BQ92478 149 aa13.09□□□□□ -0.31
SQSTM1-202ENST00000389805 TMEM223A0PJW6 202 aa13.08□□□□□ -0.31
SQSTM1-202ENST00000389805 LGALS9O00182 355 aa13.08□□□□□ -0.31
SQSTM1-202ENST00000389805 BRI3O95415 125 aa13.08□□□□□ -0.31
SQSTM1-202ENST00000389805 SPXQ9BT56 116 aa13.08□□□□□ -0.31
SQSTM1-202ENST00000389805 LENEPQ9Y5L5 61 aa13.08□□□□□ -0.31
SQSTM1-202ENST00000389805 PRRC2AP48634 2157 aaKnown RBP13.08□□□□□ -0.31
SQSTM1-202ENST00000389805 LEPROTO15243 131 aa13.08□□□□□ -0.32
SQSTM1-202ENST00000389805 PSMB8P28062 276 aa13.08□□□□□ -0.32
SQSTM1-202ENST00000389805 KRTAP10-9P60411 292 aa13.08□□□□□ -0.32
SQSTM1-202ENST00000389805 LINC01356Q8N9X3 169 aa13.07□□□□□ -0.32
SQSTM1-202ENST00000389805 DUX5Q96PT3 197 aa13.07□□□□□ -0.32
SQSTM1-202ENST00000389805 H7C423 109 aa13.07□□□□□ -0.32
SQSTM1-202ENST00000389805 IGKV3-20P01619 116 aa13.07□□□□□ -0.32
SQSTM1-202ENST00000389805 ZNF22P17026 224 aaPredicted RBP13.07□□□□□ -0.32
SQSTM1-202ENST00000389805 A0A096LNT2 108 aa13.06□□□□□ -0.32
SQSTM1-202ENST00000389805 M0QXV9 152 aa13.06□□□□□ -0.32
SQSTM1-202ENST00000389805 FAM19A4Q96LR4 140 aa13.06□□□□□ -0.32
SQSTM1-202ENST00000389805 IGHV4OR15-8A0A075B7B6 117 aa13.06□□□□□ -0.32
SQSTM1-202ENST00000389805 A0A087WW49 117 aa13.06□□□□□ -0.32
SQSTM1-202ENST00000389805 A0A0J9YXY3 114 aa13.06□□□□□ -0.32
SQSTM1-202ENST00000389805 Q6Q795 121 aa13.06□□□□□ -0.32
SQSTM1-202ENST00000389805 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.05□□□□□ -0.32
SQSTM1-202ENST00000389805 RPL13AP40429 203 aaKnown RBP13.05□□□□□ -0.32
SQSTM1-202ENST00000389805 TRAV8-3A0A0A6YYJ7 113 aa13.05□□□□□ -0.32
SQSTM1-202ENST00000389805 DCANP1Q8TF63 244 aa13.05□□□□□ -0.32
SQSTM1-202ENST00000389805 TRAV12-3A0A0B4J271 114 aa13.04□□□□□ -0.32
SQSTM1-202ENST00000389805 RNASE13Q5GAN3 156 aaKnown RBP13.04□□□□□ -0.32
SQSTM1-202ENST00000389805 A8MZ25 164 aa13.04□□□□□ -0.32
SQSTM1-202ENST00000389805 ICOSQ9Y6W8 199 aa13.04□□□□□ -0.32
SQSTM1-202ENST00000389805 NBPF19A0A087WUL8 3843 aa13.04□□□□□ -0.32
SQSTM1-202ENST00000389805 M0R2P5 195 aa13.03□□□□□ -0.32
SQSTM1-202ENST00000389805 ADAMTSL4-AS1Q5T5F5 129 aa13.03□□□□□ -0.32
SQSTM1-202ENST00000389805 UBR5O95071 2799 aaPredicted RBP13.03□□□□□ -0.32
SQSTM1-202ENST00000389805 TRBV30A0A0K0K1B3 111 aa13.03□□□□□ -0.32
SQSTM1-202ENST00000389805 DSCR9P59020 149 aa13.03□□□□□ -0.32
SQSTM1-202ENST00000389805 SYNJ2BPP57105 145 aa13.02□□□□□ -0.32
SQSTM1-202ENST00000389805 TRAV12-2A0A075B6T6 113 aa13.02□□□□□ -0.33
SQSTM1-202ENST00000389805 TRBV27A0A0K0K1C4 114 aa13.02□□□□□ -0.33
SQSTM1-202ENST00000389805 IGHV3-30-3P0DP02 117 aa13.02□□□□□ -0.33
SQSTM1-202ENST00000389805 HIST2H2BDQ6DRA6 164 aa13.02□□□□□ -0.33
SQSTM1-202ENST00000389805 MED14OSP0DP75 135 aa13.01□□□□□ -0.33
SQSTM1-202ENST00000389805 POM121L12Q8N7R1 296 aa13.01□□□□□ -0.33
SQSTM1-202ENST00000389805 CEMP1Q6PRD7 247 aaPredicted RBP13.01□□□□□ -0.33
SQSTM1-202ENST00000389805 K7EMT4 169 aa13□□□□□ -0.33
SQSTM1-202ENST00000389805 APRG1Q8IVJ8 170 aa13□□□□□ -0.33
SQSTM1-202ENST00000389805 DAND5Q8N907 189 aa13□□□□□ -0.33
SQSTM1-202ENST00000389805 MDFICQ9P1T7 246 aa12.99□□□□□ -0.33
SQSTM1-202ENST00000389805 KLLNB2CW77 178 aa12.99□□□□□ -0.33
SQSTM1-202ENST00000389805 PPDPFQ9H3Y8 114 aa12.99□□□□□ -0.33
SQSTM1-202ENST00000389805 TIMM21Q9BVV7 248 aa12.99□□□□□ -0.33
SQSTM1-202ENST00000389805 NXPH4O95158 308 aa12.98□□□□□ -0.33
SQSTM1-202ENST00000389805 ID1P41134 155 aa12.98□□□□□ -0.33
SQSTM1-202ENST00000389805 C18orf65Q6ZTR6 163 aa12.98□□□□□ -0.33
SQSTM1-202ENST00000389805 IGLV4-3A0A075B6K6 122 aa12.98□□□□□ -0.33
SQSTM1-202ENST00000389805 COX6CP09669 75 aa12.98□□□□□ -0.33
SQSTM1-202ENST00000389805 LITAFQ99732 161 aa12.98□□□□□ -0.33
SQSTM1-202ENST00000389805 APCP25054 2843 aa12.97□□□□□ -0.33
SQSTM1-202ENST00000389805 TRGV11A0A075B6L2 103 aa12.97□□□□□ -0.33
SQSTM1-202ENST00000389805 FAM236AA0A1B0GUQ0 79 aa12.97□□□□□ -0.33
SQSTM1-202ENST00000389805 FAM236BA0A1B0GV22 79 aa12.97□□□□□ -0.33
SQSTM1-202ENST00000389805 DEFB136Q30KP8 78 aa12.97□□□□□ -0.33
SQSTM1-202ENST00000389805 NF1P21359 2839 aa12.97□□□□□ -0.33
SQSTM1-202ENST00000389805 I3L3M4 83 aa12.96□□□□□ -0.33
SQSTM1-202ENST00000389805 M0QY20 66 aa12.96□□□□□ -0.33
SQSTM1-202ENST00000389805 IGHV4-31P0DP07 118 aa12.96□□□□□ -0.33
SQSTM1-202ENST00000389805 C20orf203Q8NBC4 194 aa12.96□□□□□ -0.33
SQSTM1-202ENST00000389805 VPREB3Q9UKI3 123 aa12.96□□□□□ -0.33
SQSTM1-202ENST00000389805 ZNF843Q8N446 348 aa12.96□□□□□ -0.33
SQSTM1-202ENST00000389805 IGHV3-73A0A0B4J1V6 119 aa12.96□□□□□ -0.34
SQSTM1-202ENST00000389805 ZNF702PQ9H963 129 aa12.96□□□□□ -0.34
SQSTM1-202ENST00000389805 NDUFA12Q9UI09 145 aa12.96□□□□□ -0.34
SQSTM1-202ENST00000389805 CR1P17927 2039 aa12.96□□□□□ -0.34
SQSTM1-202ENST00000389805 LINC01587Q99440 93 aa12.95□□□□□ -0.34
SQSTM1-202ENST00000389805 NOTCH2Q04721 2471 aa12.95□□□□□ -0.34
SQSTM1-202ENST00000389805 HOXD3P31249 432 aaPredicted RBP12.95□□□□□ -0.34
SQSTM1-202ENST00000389805 SPINK13Q1W4C9 94 aa12.95□□□□□ -0.34
SQSTM1-202ENST00000389805 WNK1Q9H4A3 2382 aa12.95□□□□□ -0.34
SQSTM1-202ENST00000389805 H3BT86 120 aa12.94□□□□□ -0.34
SQSTM1-202ENST00000389805 CD28P10747 220 aa12.94□□□□□ -0.34
SQSTM1-202ENST00000389805 Q6YL49 198 aa12.94□□□□□ -0.34
SQSTM1-202ENST00000389805 NSUN5P1Q3KNT7 163 aa12.94□□□□□ -0.34
SQSTM1-202ENST00000389805 TNFRSF18Q9Y5U5 241 aa12.94□□□□□ -0.34
SQSTM1-202ENST00000389805 J3QLI3 93 aa12.93□□□□□ -0.34
SQSTM1-202ENST00000389805 A0A0J9YX75 114 aa12.93□□□□□ -0.34
SQSTM1-202ENST00000389805 TRBV6-5A0A0K0K1A5 114 aa12.93□□□□□ -0.34
SQSTM1-202ENST00000389805 A0A0U1RRA0 63 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms