RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 COMMD3Q9UBI1 195 aa-2.3□□□□□ -2.78
RNU6-540P-201ENST00000384622 R4GMQ9 66 aa-2.3□□□□□ -2.78
RNU6-540P-201ENST00000384622 URB2Q14146 1524 aaKnown RBP-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 A0A087WUJ7 227 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 A4D1N5 150 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 KRT87PA6NCN2 255 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 F5H5K5 113 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 H3BMG7 143 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 ANXA4P09525 319 aaPredicted RBP-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 SAA1P0DJI8 122 aaPredicted RBP-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 PSMB3P49720 205 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 BPIFB3P59826 476 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 MRPS6P82932 125 aaKnown RBP-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 CDK6Q00534 326 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 IL18Q14116 193 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 PMVKQ15126 192 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 RHEBQ15382 184 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 TAF7Q15545 349 aaPredicted RBP-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 LRRC23Q53EV4 343 aaPredicted RBP-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 KHDC3LQ587J8 217 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 SAMD13Q5VXD3 122 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 Q6AWC8 147 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 HIST2H2AA3Q6FI13 130 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 CENPUQ71F23 418 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 VTCN1Q7Z7D3 282 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 ACBD7Q8N6N7 88 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 DOK4Q8TEW6 326 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 DYNLRB2Q8TF09 96 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 LCN9Q8WX39 176 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 CFAP36Q96G28 342 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 MED10Q9BTT4 135 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 TTTY13Q9BZ97 58 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 POLE4Q9NR33 117 aa-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 SBDSQ9Y3A5 250 aaKnown RBP eCLIP-2.31□□□□□ -2.78
RNU6-540P-201ENST00000384622 TMEM72A0PK05 275 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 EVPLLA8MZ36 301 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 HPRT1P00492 218 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 HBE1P02100 147 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 TTRP02766 147 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 CALM1P0DP23 149 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 CALM2P0DP24 149 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 CALM3P0DP25 149 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 HLA-DPA1P20036 260 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 GCLMP48507 274 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 FXYD7P58549 80 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 TSPEAR-AS2P59090 65 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 TPPP2P59282 170 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 PSMC5P62195 406 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 HBA1P69905 142 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 PLCXD3Q63HM9 321 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 S100A7AQ86SG5 101 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 OR13C9Q8NGT0 318 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 UBLCP1Q8WVY7 318 aaPredicted RBP-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 CCDC47Q96A33 483 aaKnown RBP-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 RPEQ96AT9 228 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 SGTBQ96EQ0 304 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 PPM1MQ96MI6 270 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 MCEEQ96PE7 176 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 TSGA13Q96PP4 275 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 EBPLQ9BY08 206 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 EFCAB1Q9HAE3 211 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 NKIRAS2Q9NYR9 191 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 EMC3Q9P0I2 261 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 EXTL2Q9UBQ6 330 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 V9GYQ6 96 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 ABCA8O94911 1581 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 CFAP74Q9C0B2 1584 aa-2.32□□□□□ -2.78
RNU6-540P-201ENST00000384622 CCNB3Q8WWL7 1395 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 TRAV34A0A0B4J273 112 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 UQCR11O14957 56 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 MT-ATP6P00846 226 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 APOEP02649 317 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 IL5P05113 134 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 CCDC192P0DO97 292 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 SYT1P21579 422 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 CCNHP51946 323 aaPredicted RBP-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 RAB5BP61020 215 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 MIR22HGQ0VDD5 57 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 STX4Q12846 297 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 JOSD1Q15040 202 aaPredicted RBP-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 AARDQ4LEZ3 155 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 SFTA2Q6UW10 78 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 ENHOQ6UWT2 76 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 CXorf40AQ8TE69 158 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 DTD1Q8TEA8 209 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 TMEM243Q9BU79 118 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 SEC11CQ9BY50 192 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 HDHD2Q9H0R4 259 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 SH3BGRL3Q9H299 93 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 LYRM4Q9HD34 91 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 CFDP1Q9UEE9 299 aaPredicted RBP-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 SNX10Q9Y5X0 201 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 MROH1Q8NDA8 1641 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 ATP7AQ04656 1500 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 CEP164Q9UPV0 1460 aa-2.33□□□□□ -2.78
RNU6-540P-201ENST00000384622 SMIM27A0A1W2PRY6 76 aa-2.34□□□□□ -2.78
RNU6-540P-201ENST00000384622 hADV29S1A0JD25 119 aa-2.34□□□□□ -2.78
RNU6-540P-201ENST00000384622 M0R2Z0 102 aa-2.34□□□□□ -2.78
RNU6-540P-201ENST00000384622 NFYBP25208 207 aa-2.34□□□□□ -2.78
RNU6-540P-201ENST00000384622 RAB9AP51151 201 aa-2.34□□□□□ -2.78
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms