RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 JOSD1Q15040 202 aaPredicted RBP18.85■□□□□ 0.61
MSX1-201ENST00000382723 C3orf79P0CE67 100 aa18.84■□□□□ 0.61
MSX1-201ENST00000382723 UBE2D3P61077 147 aa18.84■□□□□ 0.61
MSX1-201ENST00000382723 UBE2D2P62837 147 aa18.84■□□□□ 0.61
MSX1-201ENST00000382723 A0A0J9YY99 117 aa18.83■□□□□ 0.6
MSX1-201ENST00000382723 PAX4O43316 350 aa18.83■□□□□ 0.6
MSX1-201ENST00000382723 GYPEP15421 78 aa18.83■□□□□ 0.6
MSX1-201ENST00000382723 C2orf66Q6UXQ4 117 aa18.82■□□□□ 0.6
MSX1-201ENST00000382723 B9D2Q9BPU9 175 aa18.82■□□□□ 0.6
MSX1-201ENST00000382723 COTL1Q14019 142 aa18.82■□□□□ 0.6
MSX1-201ENST00000382723 NANOS2P60321 138 aaKnown RBP18.81■□□□□ 0.6
MSX1-201ENST00000382723 Q6ZTC4 211 aa18.81■□□□□ 0.6
MSX1-201ENST00000382723 C11orf45Q8TAV5 145 aa18.81■□□□□ 0.6
MSX1-201ENST00000382723 TOMM6Q96B49 74 aa18.81■□□□□ 0.6
MSX1-201ENST00000382723 H0Y8G0 127 aa18.8■□□□□ 0.6
MSX1-201ENST00000382723 DAZ4Q86SG3 579 aaKnown RBP18.8■□□□□ 0.6
MSX1-201ENST00000382723 DAZ3Q9NR90 486 aaKnown RBP18.8■□□□□ 0.6
MSX1-201ENST00000382723 TRAV26-1A0A087WT03 109 aa18.8■□□□□ 0.6
MSX1-201ENST00000382723 RPL39P62891 51 aaKnown RBP18.8■□□□□ 0.6
MSX1-201ENST00000382723 VSIG2Q96IQ7 327 aa18.8■□□□□ 0.6
MSX1-201ENST00000382723 MAP1LC3CQ9BXW4 147 aa18.8■□□□□ 0.6
MSX1-201ENST00000382723 CYSLTR1Q9Y271 337 aa18.8■□□□□ 0.6
MSX1-201ENST00000382723 SCGB1D1O95968 90 aa18.79■□□□□ 0.6
MSX1-201ENST00000382723 DEFA6Q01524 100 aa18.79■□□□□ 0.6
MSX1-201ENST00000382723 LINC00587B1AMM8 73 aa18.78■□□□□ 0.6
MSX1-201ENST00000382723 IFI27L1Q96BM0 104 aa18.78■□□□□ 0.6
MSX1-201ENST00000382723 G0S2P27469 103 aa18.77■□□□□ 0.6
MSX1-201ENST00000382723 CTAG1AP78358 180 aa18.77■□□□□ 0.6
MSX1-201ENST00000382723 SCGB3A1Q96QR1 104 aa18.77■□□□□ 0.6
MSX1-201ENST00000382723 LINC00694P0DN24 101 aa18.76■□□□□ 0.59
MSX1-201ENST00000382723 SYS1-DBNDD2H3BUS1 97 aa18.76■□□□□ 0.59
MSX1-201ENST00000382723 C20orf203Q8NBC4 194 aa18.76■□□□□ 0.59
MSX1-201ENST00000382723 CHCHD7Q9BUK0 85 aa18.75■□□□□ 0.59
MSX1-201ENST00000382723 A0A096LPF7 62 aa18.74■□□□□ 0.59
MSX1-201ENST00000382723 SPATA12Q7Z6I5 190 aa18.74■□□□□ 0.59
MSX1-201ENST00000382723 HUWE1Q7Z6Z7 4374 aaKnown RBP18.74■□□□□ 0.59
MSX1-201ENST00000382723 ATP5LO75964 103 aa18.74■□□□□ 0.59
MSX1-201ENST00000382723 NTM-AS1Q6ZSK4 140 aa18.74■□□□□ 0.59
MSX1-201ENST00000382723 IGKV2D-29A0A075B6S2 120 aaPredicted RBP18.72■□□□□ 0.59
MSX1-201ENST00000382723 IGKV2-29A2NJV5 120 aaPredicted RBP18.72■□□□□ 0.59
MSX1-201ENST00000382723 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP18.72■□□□□ 0.59
MSX1-201ENST00000382723 Q8N976 141 aa18.72■□□□□ 0.59
MSX1-201ENST00000382723 ATP6V0E2Q8NHE4 81 aa18.72■□□□□ 0.59
MSX1-201ENST00000382723 ERASQ7Z444 233 aa18.71■□□□□ 0.59
MSX1-201ENST00000382723 PRSS1P07477 247 aa18.7■□□□□ 0.58
MSX1-201ENST00000382723 PET117Q6UWS5 81 aa18.69■□□□□ 0.58
MSX1-201ENST00000382723 GTSF1LQ9H1H1 148 aa18.69■□□□□ 0.58
MSX1-201ENST00000382723 MEGF8Q7Z7M0 2845 aa18.69■□□□□ 0.58
MSX1-201ENST00000382723 LINC01549A6NIU2 74 aa18.68■□□□□ 0.58
MSX1-201ENST00000382723 IGIPA6NJ69 53 aa18.68■□□□□ 0.58
MSX1-201ENST00000382723 Q6ZN92 141 aa18.68■□□□□ 0.58
MSX1-201ENST00000382723 PMCHL2Q9BQD1 86 aa18.68■□□□□ 0.58
MSX1-201ENST00000382723 DEFB131BA0A096LNP1 70 aa18.68■□□□□ 0.58
MSX1-201ENST00000382723 ICOSQ9Y6W8 199 aa18.66■□□□□ 0.58
MSX1-201ENST00000382723 MRPL23Q16540 153 aaKnown RBP18.66■□□□□ 0.58
MSX1-201ENST00000382723 CEMP1Q6PRD7 247 aaPredicted RBP18.66■□□□□ 0.58
MSX1-201ENST00000382723 OPRPNQ99935 248 aaPredicted RBP18.66■□□□□ 0.58
MSX1-201ENST00000382723 PKIAP61925 76 aa18.65■□□□□ 0.58
MSX1-201ENST00000382723 TIMM17AQ99595 171 aa18.65■□□□□ 0.58
MSX1-201ENST00000382723 DNAH9Q9NYC9 4486 aa18.65■□□□□ 0.58
MSX1-201ENST00000382723 TRBV25-1A0A075B6N4 114 aa18.64■□□□□ 0.58
MSX1-201ENST00000382723 TRBV6-8A0A0A6YYG3 113 aa18.64■□□□□ 0.58
MSX1-201ENST00000382723 C20orf202A1L168 122 aa18.64■□□□□ 0.58
MSX1-201ENST00000382723 ATOH7Q8N100 152 aa18.64■□□□□ 0.58
MSX1-201ENST00000382723 BAALCQ8WXS3 180 aa18.64■□□□□ 0.58
MSX1-201ENST00000382723 TMEM141Q96I45 108 aa18.64■□□□□ 0.58
MSX1-201ENST00000382723 TMEM243Q9BU79 118 aa18.64■□□□□ 0.58
MSX1-201ENST00000382723 NHLRC4P0CG21 123 aaPredicted RBP18.64■□□□□ 0.57
MSX1-201ENST00000382723 PRO1933Q9H354 126 aa18.64■□□□□ 0.57
MSX1-201ENST00000382723 LINC01545Q5VT33 79 aa18.63■□□□□ 0.57
MSX1-201ENST00000382723 ZNF664Q8N3J9 261 aa18.63■□□□□ 0.57
MSX1-201ENST00000382723 UBE2D4Q9Y2X8 147 aa18.62■□□□□ 0.57
MSX1-201ENST00000382723 COL7A1Q02388 2944 aa18.62■□□□□ 0.57
MSX1-201ENST00000382723 TMEM97Q5BJF2 176 aa18.62■□□□□ 0.57
MSX1-201ENST00000382723 ZC2HC1BQ5TFG8 222 aa18.62■□□□□ 0.57
MSX1-201ENST00000382723 UBE2L6O14933 153 aa18.61■□□□□ 0.57
MSX1-201ENST00000382723 TRAV10A0A0B4J240 114 aa18.61■□□□□ 0.57
MSX1-201ENST00000382723 PYGO1Q9Y3Y4 419 aa18.61■□□□□ 0.57
MSX1-201ENST00000382723 TSTD3H0UI37 97 aa18.6■□□□□ 0.57
MSX1-201ENST00000382723 LGALS9CQ6DKI2 356 aa18.6■□□□□ 0.57
MSX1-201ENST00000382723 CHCHD5Q9BSY4 110 aa18.6■□□□□ 0.57
MSX1-201ENST00000382723 SPANXA1Q9NS26 97 aa18.6■□□□□ 0.57
MSX1-201ENST00000382723 IGLV4-3A0A075B6K6 122 aa18.59■□□□□ 0.57
MSX1-201ENST00000382723 H3BNG1 76 aa18.59■□□□□ 0.57
MSX1-201ENST00000382723 ODF1Q14990 250 aa18.59■□□□□ 0.57
MSX1-201ENST00000382723 FGF6P10767 208 aa18.59■□□□□ 0.57
MSX1-201ENST00000382723 GAGE6Q13070 117 aa18.58■□□□□ 0.56
MSX1-201ENST00000382723 PRSS29PA6NIE9 313 aa18.57■□□□□ 0.56
MSX1-201ENST00000382723 RNASE13Q5GAN3 156 aaKnown RBP18.57■□□□□ 0.56
MSX1-201ENST00000382723 DGAT2L7PQ6IED9 249 aa18.57■□□□□ 0.56
MSX1-201ENST00000382723 SH2D6Q7Z4S9 175 aa18.57■□□□□ 0.56
MSX1-201ENST00000382723 A0A087WX48 190 aa18.57■□□□□ 0.56
MSX1-201ENST00000382723 TRAV12-1A0A0B4J245 112 aa18.57■□□□□ 0.56
MSX1-201ENST00000382723 TEX43Q6ZNM6 134 aa18.57■□□□□ 0.56
MSX1-201ENST00000382723 FAM104AQ969W3 186 aa18.57■□□□□ 0.56
MSX1-201ENST00000382723 PMVKQ15126 192 aa18.56■□□□□ 0.56
MSX1-201ENST00000382723 AMMECR1LQ6DCA0 310 aa18.56■□□□□ 0.56
MSX1-201ENST00000382723 MRPL35Q9NZE8 188 aaKnown RBP18.55■□□□□ 0.56
MSX1-201ENST00000382723 DDTP30046 118 aa18.55■□□□□ 0.56
MSX1-201ENST00000382723 Q6ZUT4 128 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms