RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 PRR4Q16378 134 aa6.84□□□□□ -1.31
LIMCH1-202ENST00000381753 FAM104BQ5XKR9 115 aa6.84□□□□□ -1.31
LIMCH1-202ENST00000381753 MED14OSP0DP75 135 aa6.84□□□□□ -1.31
LIMCH1-202ENST00000381753 EDN2P20800 178 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 FXYD5Q96DB9 178 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 POLR3KQ9Y2Y1 108 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 IGLV4-69A0A075B6H9 119 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 MP68P56378 58 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 MRGPRG-AS1Q2M3A8 158 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 SPANXDQ9BXN6 97 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 CYTL1Q9NRR1 136 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 PRAC2D3DTV9 90 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 MORN5Q5VZ52 161 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 COX6B2Q6YFQ2 88 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 ORMDL1Q9P0S3 153 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 NACAE9PAV3 2078 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 TCL1BO95988 128 aa6.83□□□□□ -1.32
LIMCH1-202ENST00000381753 TRBV20-1A0A075B6N2 111 aa6.82□□□□□ -1.32
LIMCH1-202ENST00000381753 TINCRA0A1B0GVN0 87 aa6.82□□□□□ -1.32
LIMCH1-202ENST00000381753 H3BQ85 93 aa6.82□□□□□ -1.32
LIMCH1-202ENST00000381753 MRPL51Q4U2R6 128 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-202ENST00000381753 KRTAP27-1Q3LI81 207 aa6.82□□□□□ -1.32
LIMCH1-202ENST00000381753 NAA38Q9BRA0 125 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-202ENST00000381753 CRYGBP07316 175 aa6.82□□□□□ -1.32
LIMCH1-202ENST00000381753 TRBV6-4A0A1B0GX49 114 aa6.81□□□□□ -1.32
LIMCH1-202ENST00000381753 H0YIZ8 118 aa6.81□□□□□ -1.32
LIMCH1-202ENST00000381753 KIR3DS1Q14943 382 aa6.81□□□□□ -1.32
LIMCH1-202ENST00000381753 A0A087X0K7 114 aa6.81□□□□□ -1.32
LIMCH1-202ENST00000381753 EBI3Q14213 229 aa6.81□□□□□ -1.32
LIMCH1-202ENST00000381753 TRBV24-1A0A075B6N3 115 aa6.81□□□□□ -1.32
LIMCH1-202ENST00000381753 ZFAND2AQ8N6M9 145 aa6.81□□□□□ -1.32
LIMCH1-202ENST00000381753 ODF3Q96PU9 254 aa6.81□□□□□ -1.32
LIMCH1-202ENST00000381753 OPRPNQ99935 248 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-202ENST00000381753 ALPK3Q96L96 1907 aa6.81□□□□□ -1.32
LIMCH1-202ENST00000381753 C5orf47Q569G3 176 aa6.81□□□□□ -1.32
LIMCH1-202ENST00000381753 DENND4CQ5VZ89 1909 aa6.8□□□□□ -1.32
LIMCH1-202ENST00000381753 TP53TG3Q9ULZ0 132 aa6.8□□□□□ -1.32
LIMCH1-202ENST00000381753 IGLV1-40P01703 118 aa6.8□□□□□ -1.32
LIMCH1-202ENST00000381753 IGKV4-1P06312 121 aa6.8□□□□□ -1.32
LIMCH1-202ENST00000381753 RPL39LQ96EH5 51 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-202ENST00000381753 TRBV6-8A0A0A6YYG3 113 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 HIST1H2BKO60814 126 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 HIST1H2BJP06899 126 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 HIST1H2BOP23527 126 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 HIST1H2BBP33778 126 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 HIST1H2BDP58876 126 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 HIST1H2BCP62807 126 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 HIST2H2BEQ16778 126 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 PYY3Q5JQD4 70 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 HIST1H2BHQ93079 126 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 HIST1H2BNQ99877 126 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 HIST1H2BMQ99879 126 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 A0A1B0GX51 115 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 COX7BP24311 80 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 C14orf132Q9NPU4 83 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 DKK2Q9UBU2 259 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 SND1-IT1Q9HBX3 110 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 LINC00336Q6ZUF6 198 aa6.79□□□□□ -1.32
LIMCH1-202ENST00000381753 J3QQQ9 107 aa6.78□□□□□ -1.32
LIMCH1-202ENST00000381753 C3orf79P0CE67 100 aa6.78□□□□□ -1.32
LIMCH1-202ENST00000381753 C19orf71A6NCJ1 209 aa6.78□□□□□ -1.32
LIMCH1-202ENST00000381753 UBE2V1Q13404 147 aa6.78□□□□□ -1.32
LIMCH1-202ENST00000381753 WFDC9Q8NEX5 89 aa6.78□□□□□ -1.32
LIMCH1-202ENST00000381753 M0QXV9 152 aa6.77□□□□□ -1.32
LIMCH1-202ENST00000381753 MRPL52Q86TS9 123 aaKnown RBP6.77□□□□□ -1.32
LIMCH1-202ENST00000381753 PCDH15Q96QU1 1955 aa6.77□□□□□ -1.32
LIMCH1-202ENST00000381753 IGKV2-28A0A075B6P5 120 aa6.77□□□□□ -1.33
LIMCH1-202ENST00000381753 IGKV2D-28P01615 120 aa6.77□□□□□ -1.33
LIMCH1-202ENST00000381753 NREPQ16612 68 aa6.77□□□□□ -1.33
LIMCH1-202ENST00000381753 PRO1854Q9UHT4 67 aa6.77□□□□□ -1.33
LIMCH1-202ENST00000381753 HIST1H2BLQ99880 126 aa6.77□□□□□ -1.33
LIMCH1-202ENST00000381753 RPL37AP61513 92 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-202ENST00000381753 SRSF3P84103 164 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-202ENST00000381753 SS18L2Q9UHA2 77 aa6.77□□□□□ -1.33
LIMCH1-202ENST00000381753 H7C423 109 aa6.77□□□□□ -1.33
LIMCH1-202ENST00000381753 IL15RAQ13261 267 aa6.77□□□□□ -1.33
LIMCH1-202ENST00000381753 XAGE1AQ9HD64 81 aa6.76□□□□□ -1.33
LIMCH1-202ENST00000381753 USP17L23D6RBM5 183 aa6.76□□□□□ -1.33
LIMCH1-202ENST00000381753 K7EMI3 77 aa6.76□□□□□ -1.33
LIMCH1-202ENST00000381753 ANKRD29Q8N6D5 301 aa6.76□□□□□ -1.33
LIMCH1-202ENST00000381753 F8VRH5 84 aa6.76□□□□□ -1.33
LIMCH1-202ENST00000381753 Q6ZSR3 168 aa6.76□□□□□ -1.33
LIMCH1-202ENST00000381753 PKD1L2Q7Z442 2459 aa6.76□□□□□ -1.33
LIMCH1-202ENST00000381753 RPL37AP8A6NKH3 93 aa6.75□□□□□ -1.33
LIMCH1-202ENST00000381753 EML6Q6ZMW3 1958 aa6.75□□□□□ -1.33
LIMCH1-202ENST00000381753 NPYP01303 97 aa6.75□□□□□ -1.33
LIMCH1-202ENST00000381753 CXCL1P09341 107 aa6.75□□□□□ -1.33
LIMCH1-202ENST00000381753 GDF5OSQ5U4N7 250 aa6.75□□□□□ -1.33
LIMCH1-202ENST00000381753 HIST3H2BBQ8N257 126 aa6.75□□□□□ -1.33
LIMCH1-202ENST00000381753 EPM2AB3EWF7 344 aa6.74□□□□□ -1.33
LIMCH1-202ENST00000381753 H0YGX0 51 aa6.74□□□□□ -1.33
LIMCH1-202ENST00000381753 FAM231DQ6ZW35 169 aa6.74□□□□□ -1.33
LIMCH1-202ENST00000381753 LOC100131303A0A0U1RQF7 123 aa6.74□□□□□ -1.33
LIMCH1-202ENST00000381753 K7ERS5 55 aa6.74□□□□□ -1.33
LIMCH1-202ENST00000381753 BTCP35070 178 aa6.74□□□□□ -1.33
LIMCH1-202ENST00000381753 RBX1P62877 108 aa6.74□□□□□ -1.33
LIMCH1-202ENST00000381753 ODF3L2Q3SX64 289 aa6.74□□□□□ -1.33
LIMCH1-202ENST00000381753 PIEZO2Q9H5I5 2752 aa6.74□□□□□ -1.33
LIMCH1-202ENST00000381753 TET2Q6N021 2002 aaPredicted RBP6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms