RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TIMM17AQ99595 171 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 NBEAL2Q6ZNJ1 2754 aa7.52□□□□□ -1.21
LIMA1-201ENST00000341247 INSP01308 110 aa7.52□□□□□ -1.21
LIMA1-201ENST00000341247 HERVK_113P61574 105 aa7.52□□□□□ -1.21
LIMA1-201ENST00000341247 VCX2Q9H322 139 aa7.52□□□□□ -1.21
LIMA1-201ENST00000341247 TRBV7-3A0A075B6L6 115 aa7.52□□□□□ -1.21
LIMA1-201ENST00000341247 TRGV1A0A0A0MS02 117 aa7.52□□□□□ -1.21
LIMA1-201ENST00000341247 ADARB2-AS1A8MUL3 147 aa7.52□□□□□ -1.21
LIMA1-201ENST00000341247 APOMO95445 188 aa7.52□□□□□ -1.21
LIMA1-201ENST00000341247 RPL35AP18077 110 aaKnown RBP7.52□□□□□ -1.21
LIMA1-201ENST00000341247 CFAP126Q5VTH2 177 aa7.52□□□□□ -1.21
LIMA1-201ENST00000341247 UFSP1Q6NVU6 142 aa7.52□□□□□ -1.21
LIMA1-201ENST00000341247 RBX1P62877 108 aa7.51□□□□□ -1.21
LIMA1-201ENST00000341247 OCIAD2Q56VL3 154 aa7.51□□□□□ -1.21
LIMA1-201ENST00000341247 ZNF479Q96JC4 524 aa7.51□□□□□ -1.21
LIMA1-201ENST00000341247 IGLV4-3A0A075B6K6 122 aa7.51□□□□□ -1.21
LIMA1-201ENST00000341247 SPXQ9BT56 116 aa7.51□□□□□ -1.21
LIMA1-201ENST00000341247 HIVEP1P15822 2718 aa7.51□□□□□ -1.21
LIMA1-201ENST00000341247 IGLL5B9A064 214 aa7.51□□□□□ -1.21
LIMA1-201ENST00000341247 J3QKU1 62 aa7.51□□□□□ -1.21
LIMA1-201ENST00000341247 PLA2G2AP14555 144 aa7.51□□□□□ -1.21
LIMA1-201ENST00000341247 RHOHQ15669 191 aa7.51□□□□□ -1.21
LIMA1-201ENST00000341247 C11orf72Q8NBR9 251 aa7.51□□□□□ -1.21
LIMA1-201ENST00000341247 A8MWV9 139 aa7.5□□□□□ -1.21
LIMA1-201ENST00000341247 TMEM86BQ8N661 226 aa7.5□□□□□ -1.21
LIMA1-201ENST00000341247 VPS25Q9BRG1 176 aa7.5□□□□□ -1.21
LIMA1-201ENST00000341247 LGALS3P17931 250 aaKnown RBP7.5□□□□□ -1.21
LIMA1-201ENST00000341247 C1orf158Q8N1D5 194 aa7.5□□□□□ -1.21
LIMA1-201ENST00000341247 J3QQQ9 107 aa7.49□□□□□ -1.21
LIMA1-201ENST00000341247 NSD1Q96L73 2696 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-201ENST00000341247 H3BMG7 143 aa7.49□□□□□ -1.21
LIMA1-201ENST00000341247 PAPPA-AS1Q5QFB9 102 aa7.49□□□□□ -1.21
LIMA1-201ENST00000341247 TRAV8-3A0A0A6YYJ7 113 aa7.49□□□□□ -1.21
LIMA1-201ENST00000341247 A8MZ25 164 aa7.49□□□□□ -1.21
LIMA1-201ENST00000341247 RPL24P83731 157 aaKnown RBP7.49□□□□□ -1.21
LIMA1-201ENST00000341247 Q6ZTI0 123 aa7.49□□□□□ -1.21
LIMA1-201ENST00000341247 PGPEP1Q9NXJ5 209 aa7.49□□□□□ -1.21
LIMA1-201ENST00000341247 LINC01549A6NIU2 74 aa7.48□□□□□ -1.21
LIMA1-201ENST00000341247 ZNF22P17026 224 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-201ENST00000341247 TSSC4Q9Y5U2 329 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-201ENST00000341247 A0A0J9YY99 117 aa7.48□□□□□ -1.21
LIMA1-201ENST00000341247 A8MTW9 85 aa7.48□□□□□ -1.21
LIMA1-201ENST00000341247 TAL2Q16559 108 aa7.48□□□□□ -1.21
LIMA1-201ENST00000341247 LINC00467Q9BRT7 94 aa7.48□□□□□ -1.21
LIMA1-201ENST00000341247 TRAV2A0A0B4J234 112 aa7.48□□□□□ -1.21
LIMA1-201ENST00000341247 FHL3Q13643 280 aa7.48□□□□□ -1.21
LIMA1-201ENST00000341247 CBY1Q9Y3M2 126 aa7.48□□□□□ -1.21
LIMA1-201ENST00000341247 NOP10Q9NPE3 64 aaKnown RBP7.47□□□□□ -1.21
LIMA1-201ENST00000341247 LOC107984156A0A0G2JMH3 177 aa7.47□□□□□ -1.21
LIMA1-201ENST00000341247 RHODO00212 210 aa7.47□□□□□ -1.21
LIMA1-201ENST00000341247 ARL17AQ8IVW1 177 aa7.47□□□□□ -1.21
LIMA1-201ENST00000341247 Q6ZUT4 128 aa7.47□□□□□ -1.21
LIMA1-201ENST00000341247 H7C2G1 150 aa7.46□□□□□ -1.21
LIMA1-201ENST00000341247 COTL1Q14019 142 aa7.46□□□□□ -1.21
LIMA1-201ENST00000341247 TEX29Q8N6K0 151 aa7.46□□□□□ -1.21
LIMA1-201ENST00000341247 FAM104AQ969W3 186 aa7.46□□□□□ -1.21
LIMA1-201ENST00000341247 CHCHD7Q9BUK0 85 aa7.46□□□□□ -1.21
LIMA1-201ENST00000341247 TMEM223A0PJW6 202 aa7.46□□□□□ -1.22
LIMA1-201ENST00000341247 RRN3P1Q2M238 152 aa7.46□□□□□ -1.22
LIMA1-201ENST00000341247 OR5A1Q8NGJ0 315 aa7.46□□□□□ -1.22
LIMA1-201ENST00000341247 NPC2P61916 151 aa7.45□□□□□ -1.22
LIMA1-201ENST00000341247 SPINK8P0C7L1 97 aa7.45□□□□□ -1.22
LIMA1-201ENST00000341247 WFDC2Q14508 124 aa7.45□□□□□ -1.22
LIMA1-201ENST00000341247 DGAT2L7PQ6IED9 249 aa7.45□□□□□ -1.22
LIMA1-201ENST00000341247 ZNF418Q8TF45 676 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-201ENST00000341247 GAGE12JA6NER3 117 aa7.45□□□□□ -1.22
LIMA1-201ENST00000341247 GAGE4Q13068 117 aa7.45□□□□□ -1.22
LIMA1-201ENST00000341247 GAGE5Q13069 117 aa7.45□□□□□ -1.22
LIMA1-201ENST00000341247 GAGE13Q4V321 117 aa7.45□□□□□ -1.22
LIMA1-201ENST00000341247 NFE4Q86UQ8 179 aa7.45□□□□□ -1.22
LIMA1-201ENST00000341247 K7ERU9 68 aa7.44□□□□□ -1.22
LIMA1-201ENST00000341247 GAGE7O76087 117 aa7.44□□□□□ -1.22
LIMA1-201ENST00000341247 NDUFA7O95182 113 aa7.44□□□□□ -1.22
LIMA1-201ENST00000341247 RNASE1P07998 156 aaKnown RBP7.44□□□□□ -1.22
LIMA1-201ENST00000341247 GAGE12FP0CL80 117 aa7.44□□□□□ -1.22
LIMA1-201ENST00000341247 GAGE12GP0CL81 117 aa7.44□□□□□ -1.22
LIMA1-201ENST00000341247 GAGE12IP0CL82 117 aa7.44□□□□□ -1.22
LIMA1-201ENST00000341247 PCP4P48539 62 aa7.44□□□□□ -1.22
LIMA1-201ENST00000341247 AMELXQ99217 191 aa7.44□□□□□ -1.22
LIMA1-201ENST00000341247 RS1O15537 224 aa7.44□□□□□ -1.22
LIMA1-201ENST00000341247 SH2D6Q7Z4S9 175 aa7.44□□□□□ -1.22
LIMA1-201ENST00000341247 UBE2D4Q9Y2X8 147 aa7.44□□□□□ -1.22
LIMA1-201ENST00000341247 TRAV25A0A0B4J276 109 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 TMEM238LA0A1B0GVL6 79 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 A6NJY4 79 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 IGHV3-30-3P0DP02 117 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 TIMM21Q9BVV7 248 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 TRGV2A0A075B6R0 118 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 LEPROTO15243 131 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 PRSS2P07478 247 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 LOC100131303A0A0U1RQF7 123 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 TEX48A0A1B0GUV7 120 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 IGHV3-30P01768 117 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 LINC00694P0DN24 101 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 IGHV3-30-5P0DP03 117 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 BEAN1Q3B7T3 259 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 C10orf126Q8N4M7 172 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 SLC25A29Q8N8R3 303 aa7.43□□□□□ -1.22
LIMA1-201ENST00000341247 TSPAN13O95857 204 aa7.42□□□□□ -1.22
LIMA1-201ENST00000341247 GIG44P09565 113 aaPredicted RBP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms