RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 G3V4G9 280 aa13.11□□□□□ -0.31
USP39-201ENST00000323701 H7C1H1 209 aa13.11□□□□□ -0.31
USP39-201ENST00000323701 TRAV4A0A0B4J268 109 aa13.11□□□□□ -0.31
USP39-201ENST00000323701 DEFB4AO15263 64 aa13.11□□□□□ -0.31
USP39-201ENST00000323701 EGFEM1PQ0D2K5 195 aa13.11□□□□□ -0.31
USP39-201ENST00000323701 RNF151Q2KHN1 245 aa13.11□□□□□ -0.31
USP39-201ENST00000323701 TRGV2A0A075B6R0 118 aa13.1□□□□□ -0.31
USP39-201ENST00000323701 TAX1BP3O14907 124 aa13.1□□□□□ -0.31
USP39-201ENST00000323701 I3L3M4 83 aa13.1□□□□□ -0.31
USP39-201ENST00000323701 PRSS1P07477 247 aa13.1□□□□□ -0.31
USP39-201ENST00000323701 APOC4P55056 127 aa13.1□□□□□ -0.31
USP39-201ENST00000323701 TP53TG1Q9Y2A0 90 aa13.1□□□□□ -0.31
USP39-201ENST00000323701 TNFRSF18Q9Y5U5 241 aa13.1□□□□□ -0.31
USP39-201ENST00000323701 MGAM2Q2M2H8 2515 aa13.1□□□□□ -0.31
USP39-201ENST00000323701 IGHV3-38A0A0C4DH36 116 aa13.09□□□□□ -0.31
USP39-201ENST00000323701 ODF1Q14990 250 aa13.09□□□□□ -0.31
USP39-201ENST00000323701 LGALS9CQ6DKI2 356 aa13.09□□□□□ -0.31
USP39-201ENST00000323701 SLC25A29Q8N8R3 303 aa13.09□□□□□ -0.31
USP39-201ENST00000323701 SCGB3A1Q96QR1 104 aa13.09□□□□□ -0.31
USP39-201ENST00000323701 BVES-AS1Q5T3Y7 98 aa13.08□□□□□ -0.31
USP39-201ENST00000323701 DEFB130BP0DP73 79 aa13.08□□□□□ -0.32
USP39-201ENST00000323701 DEFB130AP0DP74 79 aa13.08□□□□□ -0.32
USP39-201ENST00000323701 RIPPLY3P57055 190 aa13.08□□□□□ -0.32
USP39-201ENST00000323701 OR11H2Q8NH07 326 aa13.08□□□□□ -0.32
USP39-201ENST00000323701 PHLDA1Q8WV24 401 aaPredicted RBP13.08□□□□□ -0.32
USP39-201ENST00000323701 CST9LQ9H4G1 147 aa13.08□□□□□ -0.32
USP39-201ENST00000323701 TENM3Q9P273 2699 aa13.07□□□□□ -0.32
USP39-201ENST00000323701 ATP5LO75964 103 aa13.07□□□□□ -0.32
USP39-201ENST00000323701 COX8AP10176 69 aa13.07□□□□□ -0.32
USP39-201ENST00000323701 C2orf91Q6ZV80 131 aa13.07□□□□□ -0.32
USP39-201ENST00000323701 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.07□□□□□ -0.32
USP39-201ENST00000323701 ZC2HC1BQ5TFG8 222 aa13.07□□□□□ -0.32
USP39-201ENST00000323701 MDFIQ99750 246 aa13.07□□□□□ -0.32
USP39-201ENST00000323701 IGIPA6NJ69 53 aa13.06□□□□□ -0.32
USP39-201ENST00000323701 OCIAD2Q56VL3 154 aa13.06□□□□□ -0.32
USP39-201ENST00000323701 CYSLTR1Q9Y271 337 aa13.06□□□□□ -0.32
USP39-201ENST00000323701 LOC100131303A0A0U1RQF7 123 aa13.05□□□□□ -0.32
USP39-201ENST00000323701 FGF6P10767 208 aa13.05□□□□□ -0.32
USP39-201ENST00000323701 TCTAP57738 103 aa13.05□□□□□ -0.32
USP39-201ENST00000323701 ERASQ7Z444 233 aa13.05□□□□□ -0.32
USP39-201ENST00000323701 ZNRF2Q8NHG8 242 aa13.05□□□□□ -0.32
USP39-201ENST00000323701 IGHV4-28A0A0C4DH34 117 aa13.05□□□□□ -0.32
USP39-201ENST00000323701 K7EQD1 137 aa13.05□□□□□ -0.32
USP39-201ENST00000323701 LINC00612Q8N6U2 182 aa13.05□□□□□ -0.32
USP39-201ENST00000323701 BAALCQ8WXS3 180 aa13.05□□□□□ -0.32
USP39-201ENST00000323701 OPRPNQ99935 248 aaPredicted RBP13.05□□□□□ -0.32
USP39-201ENST00000323701 SMIM9A6NGZ8 99 aa13.04□□□□□ -0.32
USP39-201ENST00000323701 VPS25Q9BRG1 176 aa13.04□□□□□ -0.32
USP39-201ENST00000323701 ZMAT4Q9H898 229 aa13.04□□□□□ -0.32
USP39-201ENST00000323701 MRPL35Q9NZE8 188 aaKnown RBP13.04□□□□□ -0.32
USP39-201ENST00000323701 FHL2Q14192 279 aa13.04□□□□□ -0.32
USP39-201ENST00000323701 RHOHQ15669 191 aa13.04□□□□□ -0.32
USP39-201ENST00000323701 FAM222AQ5U5X8 452 aa13.04□□□□□ -0.32
USP39-201ENST00000323701 C20orf203Q8NBC4 194 aa13.04□□□□□ -0.32
USP39-201ENST00000323701 Q8NAQ8 132 aa13.03□□□□□ -0.32
USP39-201ENST00000323701 RNF183Q96D59 192 aa13.03□□□□□ -0.32
USP39-201ENST00000323701 DNAJC30Q96LL9 226 aa13.03□□□□□ -0.32
USP39-201ENST00000323701 TRBV7-3A0A075B6L6 115 aa13.02□□□□□ -0.33
USP39-201ENST00000323701 AMMECR1LQ6DCA0 310 aa13.02□□□□□ -0.33
USP39-201ENST00000323701 CHCHD7Q9BUK0 85 aa13.02□□□□□ -0.33
USP39-201ENST00000323701 A0A087WX48 190 aa13.01□□□□□ -0.33
USP39-201ENST00000323701 GAGE12JA6NER3 117 aa13.01□□□□□ -0.33
USP39-201ENST00000323701 GAGE4Q13068 117 aa13.01□□□□□ -0.33
USP39-201ENST00000323701 GAGE5Q13069 117 aa13.01□□□□□ -0.33
USP39-201ENST00000323701 GAGE13Q4V321 117 aa13.01□□□□□ -0.33
USP39-201ENST00000323701 CEMP1Q6PRD7 247 aaPredicted RBP13.01□□□□□ -0.33
USP39-201ENST00000323701 FAM104AQ969W3 186 aa13.01□□□□□ -0.33
USP39-201ENST00000323701 CELA1Q9UNI1 258 aa13.01□□□□□ -0.33
USP39-201ENST00000323701 HHLA3Q9XRX5 114 aa13.01□□□□□ -0.33
USP39-201ENST00000323701 PRB2P02812 416 aaPredicted RBP13.01□□□□□ -0.33
USP39-201ENST00000323701 SAMD5Q5TGI4 173 aa13.01□□□□□ -0.33
USP39-201ENST00000323701 RETNQ9HD89 108 aa13.01□□□□□ -0.33
USP39-201ENST00000323701 TRGV4A0A0C4DH28 118 aa13□□□□□ -0.33
USP39-201ENST00000323701 PRSS29PA6NIE9 313 aa13□□□□□ -0.33
USP39-201ENST00000323701 TRBV10-1A0A0K0K1A3 114 aa12.99□□□□□ -0.33
USP39-201ENST00000323701 UBE2D3P61077 147 aa12.99□□□□□ -0.33
USP39-201ENST00000323701 UBE2D2P62837 147 aa12.99□□□□□ -0.33
USP39-201ENST00000323701 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.98□□□□□ -0.33
USP39-201ENST00000323701 TRAV12-1A0A0B4J245 112 aa12.98□□□□□ -0.33
USP39-201ENST00000323701 IGKV2-29A2NJV5 120 aaPredicted RBP12.98□□□□□ -0.33
USP39-201ENST00000323701 K7ERU9 68 aa12.98□□□□□ -0.33
USP39-201ENST00000323701 NTM-AS1Q6ZSK4 140 aa12.98□□□□□ -0.33
USP39-201ENST00000323701 TIMM17AQ99595 171 aa12.98□□□□□ -0.33
USP39-201ENST00000323701 TRBV6-4A0A1B0GX49 114 aa12.98□□□□□ -0.33
USP39-201ENST00000323701 IGKCP01834 107 aa12.98□□□□□ -0.33
USP39-201ENST00000323701 RPL36AP83881 106 aaKnown RBP12.98□□□□□ -0.33
USP39-201ENST00000323701 BOD1L2Q8IYS8 172 aa12.98□□□□□ -0.33
USP39-201ENST00000323701 RPL36ALQ969Q0 106 aaKnown RBP12.98□□□□□ -0.33
USP39-201ENST00000323701 A8MZ25 164 aa12.97□□□□□ -0.33
USP39-201ENST00000323701 DPM2O94777 84 aa12.97□□□□□ -0.33
USP39-201ENST00000323701 PCP2Q8IVA1 136 aa12.97□□□□□ -0.33
USP39-201ENST00000323701 CHTOPQ9Y3Y2 248 aaKnown RBP12.97□□□□□ -0.33
USP39-201ENST00000323701 MIFP14174 115 aa12.96□□□□□ -0.33
USP39-201ENST00000323701 TMEM141Q96I45 108 aa12.96□□□□□ -0.33
USP39-201ENST00000323701 TRAV8-6A0A0B4J262 113 aa12.96□□□□□ -0.34
USP39-201ENST00000323701 LYRM9A8MSI8 78 aa12.96□□□□□ -0.34
USP39-201ENST00000323701 F8VRH5 84 aa12.96□□□□□ -0.34
USP39-201ENST00000323701 IGLV4-3A0A075B6K6 122 aa12.95□□□□□ -0.34
USP39-201ENST00000323701 IGKV2D-26A0A0A0MRZ7 120 aa12.95□□□□□ -0.34
USP39-201ENST00000323701 SEC11AP67812 179 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms