RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 TRAV8-3A0A0A6YYJ7 113 aa16.07■□□□□ 0.16
SHMT1-201ENST00000316694 A0A0J9YXY3 114 aa16.07■□□□□ 0.16
SHMT1-201ENST00000316694 FAM104AQ969W3 186 aa16.07■□□□□ 0.16
SHMT1-201ENST00000316694 TEX15Q9BXT5 2789 aa16.07■□□□□ 0.16
SHMT1-201ENST00000316694 Q1RN00 199 aa16.06■□□□□ 0.16
SHMT1-201ENST00000316694 PYGO1Q9Y3Y4 419 aa16.06■□□□□ 0.16
SHMT1-201ENST00000316694 PRRC2AP48634 2157 aaKnown RBP16.06■□□□□ 0.16
SHMT1-201ENST00000316694 J3QLI3 93 aa16.06■□□□□ 0.16
SHMT1-201ENST00000316694 RBMY1BA6NDE4 496 aaKnown RBP16.05■□□□□ 0.16
SHMT1-201ENST00000316694 RBMY1EA6NEQ0 496 aaKnown RBP16.05■□□□□ 0.16
SHMT1-201ENST00000316694 M0R2P5 195 aa16.05■□□□□ 0.16
SHMT1-201ENST00000316694 RBMY1DP0C7P1 496 aaKnown RBP16.05■□□□□ 0.16
SHMT1-201ENST00000316694 ANKRD29Q8N6D5 301 aa16.05■□□□□ 0.16
SHMT1-201ENST00000316694 NACAE9PAV3 2078 aa16.05■□□□□ 0.16
SHMT1-201ENST00000316694 ABCA12Q86UK0 2595 aa16.05■□□□□ 0.16
SHMT1-201ENST00000316694 H3BMM0 161 aa16.05■□□□□ 0.16
SHMT1-201ENST00000316694 Q6ZSN1 163 aa16.05■□□□□ 0.16
SHMT1-201ENST00000316694 MYO9AB2RTY4 2548 aa16.04■□□□□ 0.16
SHMT1-201ENST00000316694 A0A0B4J2C4 111 aa16.04■□□□□ 0.16
SHMT1-201ENST00000316694 MRPS36P82909 103 aaKnown RBP16.04■□□□□ 0.16
SHMT1-201ENST00000316694 SBSPONQ8IVN8 264 aa16.04■□□□□ 0.16
SHMT1-201ENST00000316694 C9JAW5 83 aa16.04■□□□□ 0.16
SHMT1-201ENST00000316694 Q6YL49 198 aa16.04■□□□□ 0.16
SHMT1-201ENST00000316694 PRSS2P07478 247 aa16.03■□□□□ 0.16
SHMT1-201ENST00000316694 EDA2RQ9HAV5 297 aa16.03■□□□□ 0.16
SHMT1-201ENST00000316694 USP24Q9UPU5 2620 aa16.03■□□□□ 0.16
SHMT1-201ENST00000316694 TRAV16A0A0A6YYK6 109 aaPredicted RBP16.02■□□□□ 0.16
SHMT1-201ENST00000316694 SLC25A20O43772 301 aa16.02■□□□□ 0.16
SHMT1-201ENST00000316694 IGKV2D-29A0A075B6S2 120 aaPredicted RBP16.02■□□□□ 0.15
SHMT1-201ENST00000316694 IGKV2-29A2NJV5 120 aaPredicted RBP16.02■□□□□ 0.15
SHMT1-201ENST00000316694 TMEM61Q8N0U2 210 aa16.02■□□□□ 0.15
SHMT1-201ENST00000316694 ZNF415Q09FC8 603 aa16.01■□□□□ 0.15
SHMT1-201ENST00000316694 IGHV3-38A0A0C4DH36 116 aa16■□□□□ 0.15
SHMT1-201ENST00000316694 A0A1B0GV72 72 aa16■□□□□ 0.15
SHMT1-201ENST00000316694 A8MZ25 164 aa16■□□□□ 0.15
SHMT1-201ENST00000316694 MT-ATP8P03928 68 aa16■□□□□ 0.15
SHMT1-201ENST00000316694 SPINK8P0C7L1 97 aa16■□□□□ 0.15
SHMT1-201ENST00000316694 KHDC1LQ5JSQ8 128 aa16■□□□□ 0.15
SHMT1-201ENST00000316694 Q5PR19 223 aa16■□□□□ 0.15
SHMT1-201ENST00000316694 ZNF469Q96JG9 3925 aaPredicted RBP16■□□□□ 0.15
SHMT1-201ENST00000316694 CHCHD7Q9BUK0 85 aa16■□□□□ 0.15
SHMT1-201ENST00000316694 CR1P17927 2039 aa15.99■□□□□ 0.15
SHMT1-201ENST00000316694 IGHV1-58A0A0C4DH39 117 aa15.99■□□□□ 0.15
SHMT1-201ENST00000316694 XGP55808 180 aa15.99■□□□□ 0.15
SHMT1-201ENST00000316694 KRTAP10-9P60411 292 aa15.99■□□□□ 0.15
SHMT1-201ENST00000316694 LINC01587Q99440 93 aa15.99■□□□□ 0.15
SHMT1-201ENST00000316694 LITAFQ99732 161 aa15.99■□□□□ 0.15
SHMT1-201ENST00000316694 NDUFA12Q9UI09 145 aa15.99■□□□□ 0.15
SHMT1-201ENST00000316694 HIST2H2BDQ6DRA6 164 aa15.99■□□□□ 0.15
SHMT1-201ENST00000316694 Q6ZUT4 128 aa15.99■□□□□ 0.15
SHMT1-201ENST00000316694 UBE2D4Q9Y2X8 147 aa15.99■□□□□ 0.15
SHMT1-201ENST00000316694 CIDEAO60543 219 aa15.98■□□□□ 0.15
SHMT1-201ENST00000316694 CRYBA4P53673 196 aa15.98■□□□□ 0.15
SHMT1-201ENST00000316694 ADAMTSL4-AS1Q5T5F5 129 aa15.98■□□□□ 0.15
SHMT1-201ENST00000316694 NAV2Q8IVL1 2488 aa15.98■□□□□ 0.15
SHMT1-201ENST00000316694 NPC2P61916 151 aa15.97■□□□□ 0.15
SHMT1-201ENST00000316694 LINC00467Q9BRT7 94 aa15.97■□□□□ 0.15
SHMT1-201ENST00000316694 A8MTW9 85 aa15.96■□□□□ 0.15
SHMT1-201ENST00000316694 IGHV4-31P0DP07 118 aa15.96■□□□□ 0.15
SHMT1-201ENST00000316694 CKS1BP61024 79 aa15.96■□□□□ 0.15
SHMT1-201ENST00000316694 VSIG2Q96IQ7 327 aa15.96■□□□□ 0.15
SHMT1-201ENST00000316694 SPANXA1Q9NS26 97 aa15.96■□□□□ 0.15
SHMT1-201ENST00000316694 TINCRA0A1B0GVN0 87 aa15.96■□□□□ 0.15
SHMT1-201ENST00000316694 BBC3Q96PG8 261 aaPredicted RBP15.96■□□□□ 0.15
SHMT1-201ENST00000316694 MAP6D1Q9H9H5 199 aa15.96■□□□□ 0.15
SHMT1-201ENST00000316694 FSHBP01225 129 aa15.95■□□□□ 0.14
SHMT1-201ENST00000316694 DYNLRB2Q8TF09 96 aa15.95■□□□□ 0.14
SHMT1-201ENST00000316694 PEMTQ9UBM1 199 aa15.95■□□□□ 0.14
SHMT1-201ENST00000316694 TLN2Q9Y4G6 2542 aa15.95■□□□□ 0.14
SHMT1-201ENST00000316694 ATXN8Q156A1 80 aa15.94■□□□□ 0.14
SHMT1-201ENST00000316694 GEMIN7Q9H840 131 aaKnown RBP15.94■□□□□ 0.14
SHMT1-201ENST00000316694 UBR5O95071 2799 aaPredicted RBP15.94■□□□□ 0.14
SHMT1-201ENST00000316694 TRIAP1O43715 76 aa15.94■□□□□ 0.14
SHMT1-201ENST00000316694 C11orf72Q8NBR9 251 aa15.94■□□□□ 0.14
SHMT1-201ENST00000316694 CUBNO60494 3623 aa15.93■□□□□ 0.14
SHMT1-201ENST00000316694 IGHV3-53P01767 116 aa15.92■□□□□ 0.14
SHMT1-201ENST00000316694 LINC01620Q4KN68 170 aa15.92■□□□□ 0.14
SHMT1-201ENST00000316694 PIK3CD-AS1Q5SR53 167 aa15.92■□□□□ 0.14
SHMT1-201ENST00000316694 MIAQ16674 131 aa15.91■□□□□ 0.14
SHMT1-201ENST00000316694 Q6ZSV7 163 aa15.91■□□□□ 0.14
SHMT1-201ENST00000316694 SPANXDQ9BXN6 97 aa15.91■□□□□ 0.14
SHMT1-201ENST00000316694 SPANXCQ9NY87 97 aa15.91■□□□□ 0.14
SHMT1-201ENST00000316694 INSP01308 110 aa15.91■□□□□ 0.14
SHMT1-201ENST00000316694 CHD6Q8TD26 2715 aa15.9■□□□□ 0.14
SHMT1-201ENST00000316694 TRBV30A0A0K0K1B3 111 aa15.9■□□□□ 0.14
SHMT1-201ENST00000316694 NTN5Q8WTR8 489 aaPredicted RBP15.9■□□□□ 0.14
SHMT1-201ENST00000316694 C4orf3Q8WVX3 66 aa15.89■□□□□ 0.13
SHMT1-201ENST00000316694 XCL2Q9UBD3 114 aa15.89■□□□□ 0.13
SHMT1-201ENST00000316694 CDKN2A-AS1Q9UH64 79 aa15.89■□□□□ 0.13
SHMT1-201ENST00000316694 IGHV3OR16-12A0A075B7B8 117 aa15.89■□□□□ 0.13
SHMT1-201ENST00000316694 DGAT2L7PQ6IED9 249 aa15.89■□□□□ 0.13
SHMT1-201ENST00000316694 DAND5Q8N907 189 aa15.89■□□□□ 0.13
SHMT1-201ENST00000316694 DNAJC30Q96LL9 226 aa15.89■□□□□ 0.13
SHMT1-201ENST00000316694 ICOSQ9Y6W8 199 aa15.89■□□□□ 0.13
SHMT1-201ENST00000316694 WNK1Q9H4A3 2382 aa15.88■□□□□ 0.13
SHMT1-201ENST00000316694 M0QXV9 152 aa15.88■□□□□ 0.13
SHMT1-201ENST00000316694 DEFB114Q30KQ6 69 aa15.88■□□□□ 0.13
SHMT1-201ENST00000316694 ZFAND6Q6FIF0 208 aa15.88■□□□□ 0.13
SHMT1-201ENST00000316694 TMEM262E9PQX1 116 aa15.87■□□□□ 0.13
SHMT1-201ENST00000316694 NBPF19A0A087WUL8 3843 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms