RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 EDA2RQ9HAV5 297 aa14.57□□□□□ -0.08
VPS53-201ENST00000291074 TNFRSF18Q9Y5U5 241 aa14.57□□□□□ -0.08
VPS53-201ENST00000291074 CLUHP3Q96NS8 147 aa14.56□□□□□ -0.08
VPS53-201ENST00000291074 UNC79Q9P2D8 2635 aa14.56□□□□□ -0.08
VPS53-201ENST00000291074 STHQ8IWL8 128 aa14.55□□□□□ -0.08
VPS53-201ENST00000291074 LINC01006Q8NI28 216 aa14.55□□□□□ -0.08
VPS53-201ENST00000291074 A0A0J9YXV3 536 aa14.55□□□□□ -0.08
VPS53-201ENST00000291074 NFE4Q86UQ8 179 aa14.55□□□□□ -0.08
VPS53-201ENST00000291074 IGHV3-64A0A075B6Q5 118 aa14.54□□□□□ -0.08
VPS53-201ENST00000291074 SRSF9Q13242 221 aaKnown RBP eCLIP14.54□□□□□ -0.08
VPS53-201ENST00000291074 RNASE13Q5GAN3 156 aaKnown RBP14.54□□□□□ -0.08
VPS53-201ENST00000291074 OR5A1Q8NGJ0 315 aa14.54□□□□□ -0.08
VPS53-201ENST00000291074 FAM104AQ969W3 186 aa14.54□□□□□ -0.08
VPS53-201ENST00000291074 ZNF479Q96JC4 524 aa14.54□□□□□ -0.08
VPS53-201ENST00000291074 VCX2Q9H322 139 aa14.54□□□□□ -0.08
VPS53-201ENST00000291074 IGHV3-38A0A0C4DH36 116 aa14.53□□□□□ -0.08
VPS53-201ENST00000291074 A0A0J9YY99 117 aa14.53□□□□□ -0.08
VPS53-201ENST00000291074 C1orf158Q8N1D5 194 aa14.53□□□□□ -0.08
VPS53-201ENST00000291074 GTSF1LQ9H1H1 148 aa14.53□□□□□ -0.08
VPS53-201ENST00000291074 TRAV25A0A0B4J276 109 aa14.52□□□□□ -0.08
VPS53-201ENST00000291074 J3QQQ9 107 aa14.52□□□□□ -0.08
VPS53-201ENST00000291074 PLA2G2AP14555 144 aa14.52□□□□□ -0.08
VPS53-201ENST00000291074 ZNF22P17026 224 aaPredicted RBP14.52□□□□□ -0.08
VPS53-201ENST00000291074 AMELXQ99217 191 aa14.52□□□□□ -0.08
VPS53-201ENST00000291074 LINC00467Q9BRT7 94 aa14.52□□□□□ -0.08
VPS53-201ENST00000291074 A0A1B0GWB2 263 aa14.52□□□□□ -0.09
VPS53-201ENST00000291074 RPL24P83731 157 aaKnown RBP14.52□□□□□ -0.09
VPS53-201ENST00000291074 PIK3CD-AS1Q5SR53 167 aa14.52□□□□□ -0.09
VPS53-201ENST00000291074 KMT2BQ9UMN6 2715 aaPredicted RBP14.51□□□□□ -0.09
VPS53-201ENST00000291074 TMEM223A0PJW6 202 aa14.51□□□□□ -0.09
VPS53-201ENST00000291074 FASNP49327 2511 aaKnown RBP14.51□□□□□ -0.09
VPS53-201ENST00000291074 SPXQ9BT56 116 aa14.51□□□□□ -0.09
VPS53-201ENST00000291074 TSSC4Q9Y5U2 329 aaPredicted RBP14.51□□□□□ -0.09
VPS53-201ENST00000291074 SMAGPQ0VAQ4 97 aa14.5□□□□□ -0.09
VPS53-201ENST00000291074 BEAN1Q3B7T3 259 aa14.5□□□□□ -0.09
VPS53-201ENST00000291074 PTH2Q96A98 100 aa14.5□□□□□ -0.09
VPS53-201ENST00000291074 RHODO00212 210 aa14.5□□□□□ -0.09
VPS53-201ENST00000291074 RRN3P1Q2M238 152 aa14.5□□□□□ -0.09
VPS53-201ENST00000291074 CHCHD7Q9BUK0 85 aa14.5□□□□□ -0.09
VPS53-201ENST00000291074 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.49□□□□□ -0.09
VPS53-201ENST00000291074 IGKV2-29A2NJV5 120 aaPredicted RBP14.49□□□□□ -0.09
VPS53-201ENST00000291074 IGHV3-53P01767 116 aa14.49□□□□□ -0.09
VPS53-201ENST00000291074 RNASE1P07998 156 aaKnown RBP14.49□□□□□ -0.09
VPS53-201ENST00000291074 LGALS3P17931 250 aaKnown RBP14.49□□□□□ -0.09
VPS53-201ENST00000291074 WFDC10AQ9H1F0 79 aa14.49□□□□□ -0.09
VPS53-201ENST00000291074 TEX48A0A1B0GUV7 120 aa14.49□□□□□ -0.09
VPS53-201ENST00000291074 RS1O15537 224 aa14.49□□□□□ -0.09
VPS53-201ENST00000291074 J3QKU1 62 aa14.48□□□□□ -0.09
VPS53-201ENST00000291074 PYGO1Q9Y3Y4 419 aa14.48□□□□□ -0.09
VPS53-201ENST00000291074 TRGV1A0A0A0MS02 117 aa14.47□□□□□ -0.09
VPS53-201ENST00000291074 LEPROTO15243 131 aa14.47□□□□□ -0.09
VPS53-201ENST00000291074 PGPEP1Q9NXJ5 209 aa14.47□□□□□ -0.09
VPS53-201ENST00000291074 APOMO95445 188 aa14.46□□□□□ -0.1
VPS53-201ENST00000291074 UBE2D1P51668 147 aa14.46□□□□□ -0.1
VPS53-201ENST00000291074 SLC25A29Q8N8R3 303 aa14.46□□□□□ -0.1
VPS53-201ENST00000291074 C16orf95Q9H693 158 aa14.46□□□□□ -0.1
VPS53-201ENST00000291074 UBE2D4Q9Y2X8 147 aa14.46□□□□□ -0.1
VPS53-201ENST00000291074 SMR3AQ99954 134 aa14.45□□□□□ -0.1
VPS53-201ENST00000291074 TMEM238LA0A1B0GVL6 79 aa14.45□□□□□ -0.1
VPS53-201ENST00000291074 A6NJY4 79 aa14.45□□□□□ -0.1
VPS53-201ENST00000291074 H3BMG7 143 aa14.45□□□□□ -0.1
VPS53-201ENST00000291074 IL17DQ8TAD2 202 aa14.45□□□□□ -0.1
VPS53-201ENST00000291074 IGHV3-30P01768 117 aa14.44□□□□□ -0.1
VPS53-201ENST00000291074 IGHV3-30-5P0DP03 117 aa14.44□□□□□ -0.1
VPS53-201ENST00000291074 SFTA2Q6UW10 78 aa14.44□□□□□ -0.1
VPS53-201ENST00000291074 Q6ZTI0 123 aa14.44□□□□□ -0.1
VPS53-201ENST00000291074 Q6ZUT4 128 aa14.44□□□□□ -0.1
VPS53-201ENST00000291074 MTURNQ8N3F0 131 aa14.43□□□□□ -0.1
VPS53-201ENST00000291074 SPANXB1Q9NS25 103 aaPredicted RBP14.43□□□□□ -0.1
VPS53-201ENST00000291074 C2CD3Q4AC94 2353 aa14.43□□□□□ -0.1
VPS53-201ENST00000291074 TRAV8-3A0A0A6YYJ7 113 aa14.42□□□□□ -0.1
VPS53-201ENST00000291074 ADARB2-AS1A8MUL3 147 aa14.42□□□□□ -0.1
VPS53-201ENST00000291074 GIG44P09565 113 aaPredicted RBP14.42□□□□□ -0.1
VPS53-201ENST00000291074 MRPS36P82909 103 aaKnown RBP14.42□□□□□ -0.1
VPS53-201ENST00000291074 DNAJC30Q96LL9 226 aa14.42□□□□□ -0.1
VPS53-201ENST00000291074 GCN1Q92616 2671 aaKnown RBP14.41□□□□□ -0.1
VPS53-201ENST00000291074 RPL35AP18077 110 aaKnown RBP14.41□□□□□ -0.1
VPS53-201ENST00000291074 HECTD1Q9ULT8 2610 aa14.41□□□□□ -0.1
VPS53-201ENST00000291074 HIVEP2P31629 2446 aa14.41□□□□□ -0.1
VPS53-201ENST00000291074 C10orf126Q8N4M7 172 aa14.41□□□□□ -0.1
VPS53-201ENST00000291074 SPANXA1Q9NS26 97 aa14.41□□□□□ -0.1
VPS53-201ENST00000291074 TSPAN13O95857 204 aa14.4□□□□□ -0.1
VPS53-201ENST00000291074 IGHV3-30-3P0DP02 117 aa14.4□□□□□ -0.1
VPS53-201ENST00000291074 TIMM21Q9BVV7 248 aa14.4□□□□□ -0.1
VPS53-201ENST00000291074 WFDC2Q14508 124 aa14.39□□□□□ -0.11
VPS53-201ENST00000291074 NDUFA11Q86Y39 141 aa14.39□□□□□ -0.11
VPS53-201ENST00000291074 ZNF418Q8TF45 676 aaPredicted RBP14.39□□□□□ -0.11
VPS53-201ENST00000291074 TMEM263Q8WUH6 116 aaKnown RBP14.39□□□□□ -0.11
VPS53-201ENST00000291074 IGLV1-51P01701 117 aa14.39□□□□□ -0.11
VPS53-201ENST00000291074 HILS1P60008 231 aa14.39□□□□□ -0.11
VPS53-201ENST00000291074 NOP10Q9NPE3 64 aaKnown RBP14.39□□□□□ -0.11
VPS53-201ENST00000291074 A8MZ25 164 aa14.38□□□□□ -0.11
VPS53-201ENST00000291074 CFC1BP0CG36 223 aa14.38□□□□□ -0.11
VPS53-201ENST00000291074 CFC1P0CG37 223 aa14.38□□□□□ -0.11
VPS53-201ENST00000291074 CRYBA4P53673 196 aa14.38□□□□□ -0.11
VPS53-201ENST00000291074 SVIPQ8NHG7 77 aa14.38□□□□□ -0.11
VPS53-201ENST00000291074 SIGMAR1Q99720 223 aa14.38□□□□□ -0.11
VPS53-201ENST00000291074 C19orf73Q9NVV2 129 aa14.38□□□□□ -0.11
VPS53-201ENST00000291074 SPINK8P0C7L1 97 aa14.37□□□□□ -0.11
VPS53-201ENST00000291074 LOC107984156A0A0G2JMH3 177 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms