RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 PLNP26678 52 aa14.99□□□□□ -0.01
YBX3-202ENST00000279550 C20orf203Q8NBC4 194 aa14.99□□□□□ -0.01
YBX3-202ENST00000279550 OR4C5Q8NGB2 326 aa14.99□□□□□ -0.01
YBX3-202ENST00000279550 TMEM141Q96I45 108 aa14.99□□□□□ -0.01
YBX3-202ENST00000279550 ZNF479Q96JC4 524 aa14.99□□□□□ -0.01
YBX3-202ENST00000279550 TIMM17AQ99595 171 aa14.99□□□□□ -0.01
YBX3-202ENST00000279550 LINC01549A6NIU2 74 aa14.98□□□□□ -0.01
YBX3-202ENST00000279550 C16orf74Q96GX8 76 aa14.98□□□□□ -0.01
YBX3-202ENST00000279550 TTTY13Q9BZ97 58 aa14.98□□□□□ -0.01
YBX3-202ENST00000279550 DAZ2Q13117 558 aaKnown RBP14.97□□□□□ -0.01
YBX3-202ENST00000279550 MPV17L2Q567V2 206 aa14.97□□□□□ -0.01
YBX3-202ENST00000279550 OPRPNQ99935 248 aaPredicted RBP14.97□□□□□ -0.01
YBX3-202ENST00000279550 KRTAP21-3Q3LHN1 58 aa14.97□□□□□ -0.01
YBX3-202ENST00000279550 KIR2DL5BQ8NHK3 375 aa14.97□□□□□ -0.01
YBX3-202ENST00000279550 DLEU1O43261 78 aa14.95□□□□□ -0.02
YBX3-202ENST00000279550 APOC4P55056 127 aa14.95□□□□□ -0.02
YBX3-202ENST00000279550 RRN3P1Q2M238 152 aa14.95□□□□□ -0.02
YBX3-202ENST00000279550 DNAJC30Q96LL9 226 aa14.95□□□□□ -0.02
YBX3-202ENST00000279550 CST9LQ9H4G1 147 aa14.95□□□□□ -0.02
YBX3-202ENST00000279550 IGLV4-69A0A075B6H9 119 aa14.95□□□□□ -0.02
YBX3-202ENST00000279550 TRAV4A0A0B4J268 109 aa14.95□□□□□ -0.02
YBX3-202ENST00000279550 PMVKQ15126 192 aa14.95□□□□□ -0.02
YBX3-202ENST00000279550 COL5A1-AS1Q5SY13 56 aa14.95□□□□□ -0.02
YBX3-202ENST00000279550 IGHV3-38A0A0C4DH36 116 aa14.94□□□□□ -0.02
YBX3-202ENST00000279550 PHLDA1Q8WV24 401 aaPredicted RBP14.94□□□□□ -0.02
YBX3-202ENST00000279550 GAGE12BA1L429 117 aa14.93□□□□□ -0.02
YBX3-202ENST00000279550 GAGE7O76087 117 aa14.93□□□□□ -0.02
YBX3-202ENST00000279550 GAGE12FP0CL80 117 aa14.93□□□□□ -0.02
YBX3-202ENST00000279550 GAGE12GP0CL81 117 aa14.93□□□□□ -0.02
YBX3-202ENST00000279550 GAGE12IP0CL82 117 aa14.93□□□□□ -0.02
YBX3-202ENST00000279550 EMP1P54849 157 aa14.93□□□□□ -0.02
YBX3-202ENST00000279550 OVOL2Q9BRP0 275 aa14.93□□□□□ -0.02
YBX3-202ENST00000279550 A8MZ25 164 aa14.92□□□□□ -0.02
YBX3-202ENST00000279550 BVES-AS1Q5T3Y7 98 aa14.92□□□□□ -0.02
YBX3-202ENST00000279550 CHCHD7Q9BUK0 85 aa14.92□□□□□ -0.02
YBX3-202ENST00000279550 C11orf86A6NJI1 115 aa14.92□□□□□ -0.02
YBX3-202ENST00000279550 FAM104AQ969W3 186 aa14.92□□□□□ -0.02
YBX3-202ENST00000279550 KPRPQ5T749 579 aaPredicted RBP14.91□□□□□ -0.02
YBX3-202ENST00000279550 MAPKAPK5-AS1Q8N8E1 139 aa14.91□□□□□ -0.02
YBX3-202ENST00000279550 IGLV4-3A0A075B6K6 122 aa14.9□□□□□ -0.02
YBX3-202ENST00000279550 K7EQD1 137 aa14.89□□□□□ -0.03
YBX3-202ENST00000279550 ZNRF2Q8NHG8 242 aa14.89□□□□□ -0.03
YBX3-202ENST00000279550 DNAH3Q8TD57 4116 aa14.89□□□□□ -0.03
YBX3-202ENST00000279550 SIVA1O15304 175 aa14.88□□□□□ -0.03
YBX3-202ENST00000279550 DEFB135Q30KP9 77 aa14.88□□□□□ -0.03
YBX3-202ENST00000279550 CEMP1Q6PRD7 247 aaPredicted RBP14.88□□□□□ -0.03
YBX3-202ENST00000279550 SLC25A29Q8N8R3 303 aa14.88□□□□□ -0.03
YBX3-202ENST00000279550 TRGV2A0A075B6R0 118 aa14.87□□□□□ -0.03
YBX3-202ENST00000279550 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.87□□□□□ -0.03
YBX3-202ENST00000279550 TRAV8-6A0A0B4J262 113 aa14.87□□□□□ -0.03
YBX3-202ENST00000279550 IGKV2-29A2NJV5 120 aaPredicted RBP14.87□□□□□ -0.03
YBX3-202ENST00000279550 X6R8D5 127 aa14.87□□□□□ -0.03
YBX3-202ENST00000279550 COTL1Q14019 142 aa14.86□□□□□ -0.03
YBX3-202ENST00000279550 TMEM97Q5BJF2 176 aa14.86□□□□□ -0.03
YBX3-202ENST00000279550 PYGO1Q9Y3Y4 419 aa14.86□□□□□ -0.03
YBX3-202ENST00000279550 PRB2P02812 416 aaPredicted RBP14.86□□□□□ -0.03
YBX3-202ENST00000279550 Q6ZVH6 145 aa14.86□□□□□ -0.03
YBX3-202ENST00000279550 TRBV7-3A0A075B6L6 115 aa14.85□□□□□ -0.03
YBX3-202ENST00000279550 TRBV10-1A0A0K0K1A3 114 aa14.85□□□□□ -0.03
YBX3-202ENST00000279550 GAGE12JA6NER3 117 aa14.84□□□□□ -0.03
YBX3-202ENST00000279550 E9PLD3 99 aa14.84□□□□□ -0.03
YBX3-202ENST00000279550 GAGE1Q13065 139 aa14.84□□□□□ -0.03
YBX3-202ENST00000279550 GAGE4Q13068 117 aa14.84□□□□□ -0.03
YBX3-202ENST00000279550 GAGE5Q13069 117 aa14.84□□□□□ -0.03
YBX3-202ENST00000279550 GAGE13Q4V321 117 aa14.84□□□□□ -0.03
YBX3-202ENST00000279550 PRADC1Q9BSG0 188 aa14.84□□□□□ -0.03
YBX3-202ENST00000279550 TRBV25-1A0A075B6N4 114 aa14.83□□□□□ -0.03
YBX3-202ENST00000279550 ZNF25P17030 456 aaPredicted RBP14.83□□□□□ -0.03
YBX3-202ENST00000279550 RPL36AP83881 106 aaKnown RBP14.83□□□□□ -0.03
YBX3-202ENST00000279550 RPL36ALQ969Q0 106 aaKnown RBP14.83□□□□□ -0.03
YBX3-202ENST00000279550 UBE2D4Q9Y2X8 147 aa14.83□□□□□ -0.03
YBX3-202ENST00000279550 MGAM2Q2M2H8 2515 aa14.83□□□□□ -0.04
YBX3-202ENST00000279550 LOC100131303A0A0U1RQF7 123 aa14.83□□□□□ -0.04
YBX3-202ENST00000279550 UBE2D3P61077 147 aa14.83□□□□□ -0.04
YBX3-202ENST00000279550 UBE2D2P62837 147 aa14.83□□□□□ -0.04
YBX3-202ENST00000279550 HSD52Q0P140 79 aa14.83□□□□□ -0.04
YBX3-202ENST00000279550 RNASE13Q5GAN3 156 aaKnown RBP14.83□□□□□ -0.04
YBX3-202ENST00000279550 PAPPA-AS1Q5QFB9 102 aa14.83□□□□□ -0.04
YBX3-202ENST00000279550 NFE4Q86UQ8 179 aa14.83□□□□□ -0.04
YBX3-202ENST00000279550 OR11H2Q8NH07 326 aa14.83□□□□□ -0.04
YBX3-202ENST00000279550 AMELXQ99217 191 aa14.83□□□□□ -0.04
YBX3-202ENST00000279550 VCX2Q9H322 139 aa14.83□□□□□ -0.04
YBX3-202ENST00000279550 HIGD1BQ9P298 99 aa14.83□□□□□ -0.04
YBX3-202ENST00000279550 NOTCH1P46531 2555 aa14.81□□□□□ -0.04
YBX3-202ENST00000279550 A0A0J9YXV3 536 aa14.81□□□□□ -0.04
YBX3-202ENST00000279550 SMIM9A6NGZ8 99 aa14.81□□□□□ -0.04
YBX3-202ENST00000279550 FHL2Q14192 279 aa14.81□□□□□ -0.04
YBX3-202ENST00000279550 RNF183Q96D59 192 aa14.81□□□□□ -0.04
YBX3-202ENST00000279550 CHAC1Q9BUX1 264 aa14.81□□□□□ -0.04
YBX3-202ENST00000279550 SPANXA1Q9NS26 97 aa14.81□□□□□ -0.04
YBX3-202ENST00000279550 DNHD1Q96M86 4753 aa14.81□□□□□ -0.04
YBX3-202ENST00000279550 K7EIL1 84 aa14.8□□□□□ -0.04
YBX3-202ENST00000279550 NTM-AS1Q6ZSK4 140 aa14.8□□□□□ -0.04
YBX3-202ENST00000279550 LINC00612Q8N6U2 182 aa14.8□□□□□ -0.04
YBX3-202ENST00000279550 TMEM170BQ5T4T1 132 aa14.8□□□□□ -0.04
YBX3-202ENST00000279550 Q6ZUT4 128 aa14.8□□□□□ -0.04
YBX3-202ENST00000279550 NBEAL1Q6ZS30 2694 aa14.8□□□□□ -0.04
YBX3-202ENST00000279550 TRGV4A0A0C4DH28 118 aa14.79□□□□□ -0.04
YBX3-202ENST00000279550 DEFB130BP0DP73 79 aa14.79□□□□□ -0.04
YBX3-202ENST00000279550 DEFB130AP0DP74 79 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms