RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 LINC01561Q8N1V8 128 aa10□□□□□ -0.81
LDLR-201ENST00000252444 A0A096LNT2 108 aa10□□□□□ -0.81
LDLR-201ENST00000252444 CDK2AP2O75956 126 aa10□□□□□ -0.81
LDLR-201ENST00000252444 NBASA2RRP1 2371 aa10□□□□□ -0.81
LDLR-201ENST00000252444 A0A0U1RRA0 63 aa9.99□□□□□ -0.81
LDLR-201ENST00000252444 LAMTOR3Q9UHA4 124 aa9.99□□□□□ -0.81
LDLR-201ENST00000252444 A0A1B0GV90 55 aa9.99□□□□□ -0.81
LDLR-201ENST00000252444 UBE2D3P61077 147 aa9.99□□□□□ -0.81
LDLR-201ENST00000252444 UBE2D2P62837 147 aa9.99□□□□□ -0.81
LDLR-201ENST00000252444 SNHG12Q9BXW3 62 aa9.98□□□□□ -0.81
LDLR-201ENST00000252444 POLR2KP53803 58 aaKnown RBP9.98□□□□□ -0.81
LDLR-201ENST00000252444 DEFB1P60022 68 aa9.98□□□□□ -0.81
LDLR-201ENST00000252444 SMR3AQ99954 134 aa9.98□□□□□ -0.81
LDLR-201ENST00000252444 CRYGDP07320 174 aa9.97□□□□□ -0.81
LDLR-201ENST00000252444 ESM1Q9NQ30 184 aa9.97□□□□□ -0.81
LDLR-201ENST00000252444 F8W1H4 67 aa9.97□□□□□ -0.81
LDLR-201ENST00000252444 NRACQ8N912 160 aa9.97□□□□□ -0.81
LDLR-201ENST00000252444 KLK12Q9UKR0 248 aa9.97□□□□□ -0.81
LDLR-201ENST00000252444 CSDC2Q9Y534 153 aaKnown RBP9.97□□□□□ -0.81
LDLR-201ENST00000252444 IBA57-AS1B1ANH7 110 aa9.97□□□□□ -0.81
LDLR-201ENST00000252444 CFC1BP0CG36 223 aa9.96□□□□□ -0.81
LDLR-201ENST00000252444 CFC1P0CG37 223 aa9.96□□□□□ -0.81
LDLR-201ENST00000252444 C5orf38Q86SI9 138 aa9.96□□□□□ -0.81
LDLR-201ENST00000252444 SPANXB1Q9NS25 103 aaPredicted RBP9.96□□□□□ -0.81
LDLR-201ENST00000252444 A4D1N5 150 aa9.96□□□□□ -0.81
LDLR-201ENST00000252444 GAGE12HA6NDE8 117 aa9.96□□□□□ -0.81
LDLR-201ENST00000252444 PRR9Q5T870 116 aa9.96□□□□□ -0.82
LDLR-201ENST00000252444 Q9HAA7 133 aa9.96□□□□□ -0.82
LDLR-201ENST00000252444 H3BNG1 76 aa9.96□□□□□ -0.82
LDLR-201ENST00000252444 RPL39P62891 51 aaKnown RBP9.95□□□□□ -0.82
LDLR-201ENST00000252444 UBE2BP63146 152 aa9.95□□□□□ -0.82
LDLR-201ENST00000252444 DOPEY2Q9Y3R5 2298 aa9.95□□□□□ -0.82
LDLR-201ENST00000252444 IGLV4-3A0A075B6K6 122 aa9.95□□□□□ -0.82
LDLR-201ENST00000252444 CD164L2Q6UWJ8 174 aa9.95□□□□□ -0.82
LDLR-201ENST00000252444 Q6ZUT4 128 aa9.95□□□□□ -0.82
LDLR-201ENST00000252444 UBE2V1Q13404 147 aa9.95□□□□□ -0.82
LDLR-201ENST00000252444 RNASE8Q8TDE3 154 aaKnown RBP9.95□□□□□ -0.82
LDLR-201ENST00000252444 FAM19A4Q96LR4 140 aa9.95□□□□□ -0.82
LDLR-201ENST00000252444 ETDCA0A1B0GVM5 59 aa9.94□□□□□ -0.82
LDLR-201ENST00000252444 SND1-IT1Q9HBX3 110 aa9.94□□□□□ -0.82
LDLR-201ENST00000252444 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.94□□□□□ -0.823e-7■■■□□ 14.9
LDLR-201ENST00000252444 TSHBP01222 138 aa9.94□□□□□ -0.82
LDLR-201ENST00000252444 COX17Q14061 63 aa9.94□□□□□ -0.82
LDLR-201ENST00000252444 NPC2P61916 151 aa9.94□□□□□ -0.82
LDLR-201ENST00000252444 KPRPQ5T749 579 aaPredicted RBP9.94□□□□□ -0.82
LDLR-201ENST00000252444 CHCHD10Q8WYQ3 142 aaPredicted RBP9.94□□□□□ -0.82
LDLR-201ENST00000252444 TMEM126AQ9H061 195 aa9.94□□□□□ -0.82
LDLR-201ENST00000252444 CLPSL2Q6UWE3 100 aa9.93□□□□□ -0.82
LDLR-201ENST00000252444 RPL18AQ02543 176 aaKnown RBP9.93□□□□□ -0.82
LDLR-201ENST00000252444 C12orf74Q32Q52 190 aa9.93□□□□□ -0.82
LDLR-201ENST00000252444 NCOR2Q9Y618 2525 aa9.93□□□□□ -0.82
LDLR-201ENST00000252444 LINC00474Q9P2X8 69 aa9.93□□□□□ -0.82
LDLR-201ENST00000252444 K7EP34 96 aa9.93□□□□□ -0.82
LDLR-201ENST00000252444 TMEM223A0PJW6 202 aa9.92□□□□□ -0.82
LDLR-201ENST00000252444 C11orf21Q9P2W6 132 aa9.92□□□□□ -0.82
LDLR-201ENST00000252444 DEFB104AQ8WTQ1 72 aa9.92□□□□□ -0.82
LDLR-201ENST00000252444 ZNF625Q96I27 306 aaPredicted RBP9.92□□□□□ -0.82
LDLR-201ENST00000252444 ORMDL1Q9P0S3 153 aa9.92□□□□□ -0.82
LDLR-201ENST00000252444 FRMD6-AS1P0C7T7 363 aa9.92□□□□□ -0.82
LDLR-201ENST00000252444 OCIAD2Q56VL3 154 aa9.92□□□□□ -0.82
LDLR-201ENST00000252444 SPTAN1Q13813 2472 aaKnown RBP9.91□□□□□ -0.82
LDLR-201ENST00000252444 RNASE13Q5GAN3 156 aaKnown RBP9.91□□□□□ -0.82
LDLR-201ENST00000252444 A0A0B4J2C4 111 aa9.91□□□□□ -0.82
LDLR-201ENST00000252444 PDE6GP18545 87 aa9.91□□□□□ -0.82
LDLR-201ENST00000252444 C1orf158Q8N1D5 194 aa9.91□□□□□ -0.82
LDLR-201ENST00000252444 ACYP1P07311 99 aa9.91□□□□□ -0.82
LDLR-201ENST00000252444 IGF2RP11717 2491 aa9.91□□□□□ -0.82
LDLR-201ENST00000252444 DEFB4AO15263 64 aa9.91□□□□□ -0.82
LDLR-201ENST00000252444 A0A1W2PPM0 123 aa9.9□□□□□ -0.82
LDLR-201ENST00000252444 WFDC9Q8NEX5 89 aa9.9□□□□□ -0.82
LDLR-201ENST00000252444 UBE2D4Q9Y2X8 147 aa9.9□□□□□ -0.82
LDLR-201ENST00000252444 PPDPFLQ8WWR9 84 aa9.9□□□□□ -0.83
LDLR-201ENST00000252444 SPANXCQ9NY87 97 aa9.9□□□□□ -0.83
LDLR-201ENST00000252444 BDP1A6H8Y1 2624 aa9.9□□□□□ -0.83
LDLR-201ENST00000252444 PRR14LQ5THK1 2151 aa9.9□□□□□ -0.83
LDLR-201ENST00000252444 ZNF124Q15973 351 aa9.89□□□□□ -0.83
LDLR-201ENST00000252444 LINC00269Q8N2A0 174 aa9.89□□□□□ -0.83
LDLR-201ENST00000252444 Q8N976 141 aa9.89□□□□□ -0.83
LDLR-201ENST00000252444 DIRC1Q969H9 104 aa9.88□□□□□ -0.83
LDLR-201ENST00000252444 DSCR8Q96T75 97 aa9.88□□□□□ -0.83
LDLR-201ENST00000252444 OPRPNQ99935 248 aaPredicted RBP9.88□□□□□ -0.83
LDLR-201ENST00000252444 RBX1P62877 108 aa9.88□□□□□ -0.83
LDLR-201ENST00000252444 NAV3Q8IVL0 2385 aa9.88□□□□□ -0.83
LDLR-201ENST00000252444 ZNF22P17026 224 aaPredicted RBP9.88□□□□□ -0.83
LDLR-201ENST00000252444 A0A1B0GUV1 79 aa9.87□□□□□ -0.83
LDLR-201ENST00000252444 C9JAW5 83 aa9.87□□□□□ -0.83
LDLR-201ENST00000252444 ANKRD39Q53RE8 183 aa9.87□□□□□ -0.83
LDLR-201ENST00000252444 CARD19Q96LW7 228 aa9.87□□□□□ -0.83
LDLR-201ENST00000252444 A0A0J9YWU9 116 aa9.86□□□□□ -0.83
LDLR-201ENST00000252444 Q8IZM0 81 aa9.86□□□□□ -0.83
LDLR-201ENST00000252444 IGLV4-69A0A075B6H9 119 aa9.86□□□□□ -0.83
LDLR-201ENST00000252444 NUPR1O60356 82 aa9.86□□□□□ -0.83
LDLR-201ENST00000252444 OXLD1Q5BKU9 147 aa9.86□□□□□ -0.83
LDLR-201ENST00000252444 MUSTN1Q8IVN3 82 aa9.86□□□□□ -0.83
LDLR-201ENST00000252444 B9D2Q9BPU9 175 aa9.86□□□□□ -0.83
LDLR-201ENST00000252444 TP73-AS1Q9UF72 201 aa9.86□□□□□ -0.83
LDLR-201ENST00000252444 JMJD7-PLA2G4BH0Y9G9 81 aa9.86□□□□□ -0.83
LDLR-201ENST00000252444 POM121L12Q8N7R1 296 aa9.86□□□□□ -0.83
LDLR-201ENST00000252444 IGLV10-54A0A075B6I4 117 aa9.85□□□□□ -0.83
LDLR-201ENST00000252444 LINC01546A6NGU7 62 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms