RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 CRYBA4P53673 196 aa16.68■□□□□ 0.26
MSX2-201ENST00000239243 HERVK_113P61574 105 aa16.68■□□□□ 0.26
MSX2-201ENST00000239243 SEC11AP67812 179 aa16.68■□□□□ 0.26
MSX2-201ENST00000239243 TRAV8-6A0A0B4J262 113 aa16.68■□□□□ 0.26
MSX2-201ENST00000239243 K7EQD1 137 aa16.68■□□□□ 0.26
MSX2-201ENST00000239243 TRBV7-3A0A075B6L6 115 aa16.67■□□□□ 0.26
MSX2-201ENST00000239243 C11orf86A6NJI1 115 aa16.67■□□□□ 0.26
MSX2-201ENST00000239243 VCX2Q9H322 139 aa16.67■□□□□ 0.26
MSX2-201ENST00000239243 IGLV4-3A0A075B6K6 122 aa16.66■□□□□ 0.26
MSX2-201ENST00000239243 RPL36AP83881 106 aaKnown RBP16.66■□□□□ 0.26
MSX2-201ENST00000239243 RPL36ALQ969Q0 106 aaKnown RBP16.66■□□□□ 0.26
MSX2-201ENST00000239243 TRBV25-1A0A075B6N4 114 aa16.66■□□□□ 0.26
MSX2-201ENST00000239243 TTTY13Q9BZ97 58 aa16.66■□□□□ 0.26
MSX2-201ENST00000239243 SPANXA1Q9NS26 97 aa16.66■□□□□ 0.26
MSX2-201ENST00000239243 TRGV2A0A075B6R0 118 aa16.65■□□□□ 0.26
MSX2-201ENST00000239243 CHCHD7Q9BUK0 85 aa16.65■□□□□ 0.26
MSX2-201ENST00000239243 ZNF25P17030 456 aaPredicted RBP16.65■□□□□ 0.26
MSX2-201ENST00000239243 NFE4Q86UQ8 179 aa16.65■□□□□ 0.26
MSX2-201ENST00000239243 ZNRF2Q8NHG8 242 aa16.65■□□□□ 0.26
MSX2-201ENST00000239243 SPATA3Q8NHX4 192 aa16.65■□□□□ 0.26
MSX2-201ENST00000239243 ORAOV1Q8WV07 137 aa16.64■□□□□ 0.25
MSX2-201ENST00000239243 GAGE12BA1L429 117 aa16.64■□□□□ 0.25
MSX2-201ENST00000239243 GAGE7O76087 117 aa16.64■□□□□ 0.25
MSX2-201ENST00000239243 GAGE12FP0CL80 117 aa16.64■□□□□ 0.25
MSX2-201ENST00000239243 GAGE12GP0CL81 117 aa16.64■□□□□ 0.25
MSX2-201ENST00000239243 GAGE12IP0CL82 117 aa16.64■□□□□ 0.25
MSX2-201ENST00000239243 PHLDA1Q8WV24 401 aaPredicted RBP16.64■□□□□ 0.25
MSX2-201ENST00000239243 OPRPNQ99935 248 aaPredicted RBP16.64■□□□□ 0.25
MSX2-201ENST00000239243 PRADC1Q9BSG0 188 aa16.64■□□□□ 0.25
MSX2-201ENST00000239243 CHAC1Q9BUX1 264 aa16.64■□□□□ 0.25
MSX2-201ENST00000239243 EMP1P54849 157 aa16.62■□□□□ 0.25
MSX2-201ENST00000239243 DAZ4Q86SG3 579 aaKnown RBP16.62■□□□□ 0.25
MSX2-201ENST00000239243 WFDC9Q8NEX5 89 aa16.62■□□□□ 0.25
MSX2-201ENST00000239243 DAZ3Q9NR90 486 aaKnown RBP16.62■□□□□ 0.25
MSX2-201ENST00000239243 COX11Q9Y6N1 276 aa16.62■□□□□ 0.25
MSX2-201ENST00000239243 IGHV3-38A0A0C4DH36 116 aa16.62■□□□□ 0.25
MSX2-201ENST00000239243 MAPKAPK5-AS1Q8N8E1 139 aa16.62■□□□□ 0.25
MSX2-201ENST00000239243 SLC25A29Q8N8R3 303 aa16.62■□□□□ 0.25
MSX2-201ENST00000239243 MYMXA0A1B0GTQ4 84 aa16.61■□□□□ 0.25
MSX2-201ENST00000239243 A6NDN8 102 aa16.61■□□□□ 0.25
MSX2-201ENST00000239243 TMEM170BQ5T4T1 132 aa16.61■□□□□ 0.25
MSX2-201ENST00000239243 SMIM9A6NGZ8 99 aa16.61■□□□□ 0.25
MSX2-201ENST00000239243 AMELXQ99217 191 aa16.61■□□□□ 0.25
MSX2-201ENST00000239243 ZMAT5Q9UDW3 170 aaKnown RBP16.61■□□□□ 0.25
MSX2-201ENST00000239243 UBE2D4Q9Y2X8 147 aa16.61■□□□□ 0.25
MSX2-201ENST00000239243 TRBV6-4A0A1B0GX49 114 aa16.6■□□□□ 0.25
MSX2-201ENST00000239243 KIR2DL5BQ8NHK3 375 aa16.6■□□□□ 0.25
MSX2-201ENST00000239243 GAGE1Q13065 139 aa16.59■□□□□ 0.25
MSX2-201ENST00000239243 LINC00469Q8N7U9 141 aa16.58■□□□□ 0.25
MSX2-201ENST00000239243 WIPF1O43516 503 aa16.58■□□□□ 0.24
MSX2-201ENST00000239243 UBE2D3P61077 147 aa16.58■□□□□ 0.24
MSX2-201ENST00000239243 UBE2D2P62837 147 aa16.58■□□□□ 0.24
MSX2-201ENST00000239243 TAL2Q16559 108 aa16.58■□□□□ 0.24
MSX2-201ENST00000239243 TIMM21Q9BVV7 248 aa16.58■□□□□ 0.24
MSX2-201ENST00000239243 IGKV2D-29A0A075B6S2 120 aaPredicted RBP16.57■□□□□ 0.24
MSX2-201ENST00000239243 IGKV2-29A2NJV5 120 aaPredicted RBP16.57■□□□□ 0.24
MSX2-201ENST00000239243 TAX1BP3O14907 124 aa16.57■□□□□ 0.24
MSX2-201ENST00000239243 APOC4P55056 127 aa16.57■□□□□ 0.24
MSX2-201ENST00000239243 NOTCH3Q9UM47 2321 aa16.57■□□□□ 0.24
MSX2-201ENST00000239243 TRGV4A0A0C4DH28 118 aa16.57■□□□□ 0.24
MSX2-201ENST00000239243 F8P00451 2351 aa16.56■□□□□ 0.24
MSX2-201ENST00000239243 FAM104AQ969W3 186 aa16.55■□□□□ 0.24
MSX2-201ENST00000239243 GAGE12JA6NER3 117 aa16.55■□□□□ 0.24
MSX2-201ENST00000239243 ZNF815PA8K554 130 aa16.55■□□□□ 0.24
MSX2-201ENST00000239243 SMAGPQ0VAQ4 97 aa16.55■□□□□ 0.24
MSX2-201ENST00000239243 GAGE4Q13068 117 aa16.55■□□□□ 0.24
MSX2-201ENST00000239243 GAGE5Q13069 117 aa16.55■□□□□ 0.24
MSX2-201ENST00000239243 GAGE13Q4V321 117 aa16.55■□□□□ 0.24
MSX2-201ENST00000239243 CEMP1Q6PRD7 247 aaPredicted RBP16.55■□□□□ 0.24
MSX2-201ENST00000239243 MRPS36P82909 103 aaKnown RBP16.54■□□□□ 0.24
MSX2-201ENST00000239243 X6R8D5 127 aa16.54■□□□□ 0.24
MSX2-201ENST00000239243 GCSHP23434 173 aa16.54■□□□□ 0.24
MSX2-201ENST00000239243 TEP1Q99973 2627 aaKnown RBP16.54■□□□□ 0.24
MSX2-201ENST00000239243 A0A0J9YXV3 536 aa16.53■□□□□ 0.24
MSX2-201ENST00000239243 LINC00612Q8N6U2 182 aa16.53■□□□□ 0.24
MSX2-201ENST00000239243 ZNF22P17026 224 aaPredicted RBP16.53■□□□□ 0.24
MSX2-201ENST00000239243 DGAT2L7PQ6IED9 249 aa16.53■□□□□ 0.24
MSX2-201ENST00000239243 TM2D2Q9BX73 214 aa16.53■□□□□ 0.24
MSX2-201ENST00000239243 GTSF1LQ9H1H1 148 aa16.53■□□□□ 0.24
MSX2-201ENST00000239243 TENM1Q9UKZ4 2725 aa16.52■□□□□ 0.24
MSX2-201ENST00000239243 TMEM223A0PJW6 202 aa16.52■□□□□ 0.24
MSX2-201ENST00000239243 CEND1Q8N111 149 aa16.52■□□□□ 0.24
MSX2-201ENST00000239243 Q6ZVH6 145 aa16.51■□□□□ 0.23
MSX2-201ENST00000239243 H3BRM9 83 aa16.51■□□□□ 0.23
MSX2-201ENST00000239243 FHL2Q14192 279 aa16.51■□□□□ 0.23
MSX2-201ENST00000239243 Q6ZUT4 128 aa16.51■□□□□ 0.23
MSX2-201ENST00000239243 ATRQ13535 2644 aa16.51■□□□□ 0.23
MSX2-201ENST00000239243 SCGB1D4Q6XE38 83 aa16.5■□□□□ 0.23
MSX2-201ENST00000239243 HIST1H4GQ99525 98 aa16.5■□□□□ 0.23
MSX2-201ENST00000239243 CSDC2Q9Y534 153 aaKnown RBP16.5■□□□□ 0.23
MSX2-201ENST00000239243 TINCRA0A1B0GVN0 87 aa16.49■□□□□ 0.23
MSX2-201ENST00000239243 LEPROTO15243 131 aa16.49■□□□□ 0.23
MSX2-201ENST00000239243 PTTG1IPP53801 180 aa16.49■□□□□ 0.23
MSX2-201ENST00000239243 FLNBO75369 2602 aaKnown RBP16.49■□□□□ 0.23
MSX2-201ENST00000239243 VWFP04275 2813 aa16.49■□□□□ 0.23
MSX2-201ENST00000239243 J3QQQ9 107 aa16.49■□□□□ 0.23
MSX2-201ENST00000239243 LGALS3P17931 250 aaKnown RBP16.49■□□□□ 0.23
MSX2-201ENST00000239243 NTM-AS1Q6ZSK4 140 aa16.49■□□□□ 0.23
MSX2-201ENST00000239243 DEFB130BP0DP73 79 aa16.48■□□□□ 0.23
MSX2-201ENST00000239243 DEFB130AP0DP74 79 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms