RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 A0A087WX48 190 aa11.89□□□□□ -0.51
LDB3-208ENST00000623007 RS1O15537 224 aa11.89□□□□□ -0.51
LDB3-208ENST00000623007 DPM2O94777 84 aa11.89□□□□□ -0.51
LDB3-208ENST00000623007 IGKCP01834 107 aa11.89□□□□□ -0.51
LDB3-208ENST00000623007 PAPPA-AS1Q5QFB9 102 aa11.89□□□□□ -0.51
LDB3-208ENST00000623007 IL17DQ8TAD2 202 aa11.89□□□□□ -0.51
LDB3-208ENST00000623007 RNASE8Q8TDE3 154 aaKnown RBP11.89□□□□□ -0.51
LDB3-208ENST00000623007 TIMM17AQ99595 171 aa11.89□□□□□ -0.51
LDB3-208ENST00000623007 C2orf88Q9BSF0 95 aa11.89□□□□□ -0.51
LDB3-208ENST00000623007 DAZ2Q13117 558 aaKnown RBP11.88□□□□□ -0.51
LDB3-208ENST00000623007 UFSP1Q6NVU6 142 aa11.88□□□□□ -0.51
LDB3-208ENST00000623007 hDV102S1A0JD36 115 aa11.87□□□□□ -0.51
LDB3-208ENST00000623007 NPSP0C0P6 89 aa11.87□□□□□ -0.51
LDB3-208ENST00000623007 CFAP126Q5VTH2 177 aa11.87□□□□□ -0.51
LDB3-208ENST00000623007 TNFRSF18Q9Y5U5 241 aa11.87□□□□□ -0.51
LDB3-208ENST00000623007 SORL1Q92673 2214 aa11.87□□□□□ -0.51
LDB3-208ENST00000623007 IGHV3-53P01767 116 aa11.87□□□□□ -0.51
LDB3-208ENST00000623007 COX8AP10176 69 aa11.87□□□□□ -0.51
LDB3-208ENST00000623007 MAJINQ3KP22 176 aa11.87□□□□□ -0.51
LDB3-208ENST00000623007 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.87□□□□□ -0.51
LDB3-208ENST00000623007 F8VRH5 84 aa11.86□□□□□ -0.51
LDB3-208ENST00000623007 DLEU1O43261 78 aa11.86□□□□□ -0.51
LDB3-208ENST00000623007 MTORP42345 2549 aa11.85□□□□□ -0.51
LDB3-208ENST00000623007 AZU1P20160 251 aa11.85□□□□□ -0.51
LDB3-208ENST00000623007 RRN3P1Q2M238 152 aa11.85□□□□□ -0.51
LDB3-208ENST00000623007 TEP1Q99973 2627 aaKnown RBP11.85□□□□□ -0.51
LDB3-208ENST00000623007 TRBV10-1A0A0K0K1A3 114 aa11.84□□□□□ -0.51
LDB3-208ENST00000623007 IGHV3OR16-12A0A075B7B8 117 aa11.84□□□□□ -0.51
LDB3-208ENST00000623007 TRAV4A0A0B4J268 109 aa11.84□□□□□ -0.51
LDB3-208ENST00000623007 SIVA1O15304 175 aa11.84□□□□□ -0.51
LDB3-208ENST00000623007 NEXN-AS1Q8NBZ9 246 aa11.84□□□□□ -0.51
LDB3-208ENST00000623007 WFDC9Q8NEX5 89 aa11.84□□□□□ -0.51
LDB3-208ENST00000623007 OR4C5Q8NGB2 326 aa11.84□□□□□ -0.51
LDB3-208ENST00000623007 SMIM9A6NGZ8 99 aa11.83□□□□□ -0.52
LDB3-208ENST00000623007 WIPF1O43516 503 aa11.83□□□□□ -0.52
LDB3-208ENST00000623007 CRYBA4P53673 196 aa11.83□□□□□ -0.52
LDB3-208ENST00000623007 CSNK1G2-AS1Q8NCQ2 148 aa11.83□□□□□ -0.52
LDB3-208ENST00000623007 OVOL2Q9BRP0 275 aa11.83□□□□□ -0.52
LDB3-208ENST00000623007 DKK2Q9UBU2 259 aa11.83□□□□□ -0.52
LDB3-208ENST00000623007 TP53TG1Q9Y2A0 90 aa11.83□□□□□ -0.52
LDB3-208ENST00000623007 CHTOPQ9Y3Y2 248 aaKnown RBP11.83□□□□□ -0.52
LDB3-208ENST00000623007 GIG44P09565 113 aaPredicted RBP11.82□□□□□ -0.52
LDB3-208ENST00000623007 RPL35AP18077 110 aaKnown RBP11.82□□□□□ -0.52
LDB3-208ENST00000623007 C12orf54Q6X4T0 127 aa11.82□□□□□ -0.52
LDB3-208ENST00000623007 KIR2DL5BQ8NHK3 375 aa11.82□□□□□ -0.52
LDB3-208ENST00000623007 SNHG12Q9BXW3 62 aa11.82□□□□□ -0.52
LDB3-208ENST00000623007 MRPL16Q9NX20 251 aaKnown RBP11.82□□□□□ -0.52
LDB3-208ENST00000623007 ANK3Q12955 4377 aaKnown RBP11.82□□□□□ -0.52
LDB3-208ENST00000623007 TRGV1A0A0A0MS02 117 aa11.81□□□□□ -0.52
LDB3-208ENST00000623007 IGIPA6NJ69 53 aa11.81□□□□□ -0.52
LDB3-208ENST00000623007 PMVKQ15126 192 aa11.81□□□□□ -0.52
LDB3-208ENST00000623007 BAALCQ8WXS3 180 aa11.81□□□□□ -0.52
LDB3-208ENST00000623007 SMAGPQ0VAQ4 97 aa11.81□□□□□ -0.52
LDB3-208ENST00000623007 C20orf203Q8NBC4 194 aa11.81□□□□□ -0.52
LDB3-208ENST00000623007 MRPL35Q9NZE8 188 aaKnown RBP11.81□□□□□ -0.52
LDB3-208ENST00000623007 HHLA3Q9XRX5 114 aa11.81□□□□□ -0.52
LDB3-208ENST00000623007 PYGO1Q9Y3Y4 419 aa11.81□□□□□ -0.52
LDB3-208ENST00000623007 TSHBP01222 138 aa11.8□□□□□ -0.52
LDB3-208ENST00000623007 APOC4P55056 127 aa11.8□□□□□ -0.52
LDB3-208ENST00000623007 BOD1L2Q8IYS8 172 aa11.8□□□□□ -0.52
LDB3-208ENST00000623007 ZMAT5Q9UDW3 170 aaKnown RBP11.8□□□□□ -0.52
LDB3-208ENST00000623007 WNK1Q9H4A3 2382 aa11.8□□□□□ -0.52
LDB3-208ENST00000623007 COL5A1-AS1Q5SY13 56 aa11.79□□□□□ -0.52
LDB3-208ENST00000623007 TMEM97Q5BJF2 176 aa11.78□□□□□ -0.52
LDB3-208ENST00000623007 ZC2HC1BQ5TFG8 222 aa11.78□□□□□ -0.52
LDB3-208ENST00000623007 HIVEP1P15822 2718 aa11.78□□□□□ -0.52
LDB3-208ENST00000623007 RPL36AP83881 106 aaKnown RBP11.78□□□□□ -0.52
LDB3-208ENST00000623007 ANKRD39Q53RE8 183 aa11.78□□□□□ -0.52
LDB3-208ENST00000623007 NEGR1Q7Z3B1 354 aa11.78□□□□□ -0.52
LDB3-208ENST00000623007 RPL36ALQ969Q0 106 aaKnown RBP11.78□□□□□ -0.52
LDB3-208ENST00000623007 WFDC10AQ9H1F0 79 aa11.78□□□□□ -0.52
LDB3-208ENST00000623007 F8P00451 2351 aa11.77□□□□□ -0.53
LDB3-208ENST00000623007 TRBV7-3A0A075B6L6 115 aa11.77□□□□□ -0.53
LDB3-208ENST00000623007 IGHV3-73A0A0B4J1V6 119 aa11.77□□□□□ -0.53
LDB3-208ENST00000623007 PRSS29PA6NIE9 313 aa11.77□□□□□ -0.53
LDB3-208ENST00000623007 COTL1Q14019 142 aa11.77□□□□□ -0.53
LDB3-208ENST00000623007 DAZ4Q86SG3 579 aaKnown RBP11.77□□□□□ -0.53
LDB3-208ENST00000623007 STPG4Q8N801 248 aa11.77□□□□□ -0.53
LDB3-208ENST00000623007 DAZ3Q9NR90 486 aaKnown RBP11.77□□□□□ -0.53
LDB3-208ENST00000623007 SPANXA1Q9NS26 97 aa11.77□□□□□ -0.53
LDB3-208ENST00000623007 EREGO14944 169 aa11.76□□□□□ -0.53
LDB3-208ENST00000623007 PRM2P04554 102 aa11.76□□□□□ -0.53
LDB3-208ENST00000623007 HERVK_113P61574 105 aa11.76□□□□□ -0.53
LDB3-208ENST00000623007 NOP10Q9NPE3 64 aaKnown RBP11.76□□□□□ -0.53
LDB3-208ENST00000623007 NSD1Q96L73 2696 aaPredicted RBP11.76□□□□□ -0.53
LDB3-208ENST00000623007 K7EQD1 137 aa11.75□□□□□ -0.53
LDB3-208ENST00000623007 FN1P02751 2386 aaKnown RBP11.75□□□□□ -0.53
LDB3-208ENST00000623007 TRGV2A0A075B6R0 118 aa11.75□□□□□ -0.53
LDB3-208ENST00000623007 TRBV6-4A0A1B0GX49 114 aa11.75□□□□□ -0.53
LDB3-208ENST00000623007 NMUP48645 174 aa11.75□□□□□ -0.53
LDB3-208ENST00000623007 CST9LQ9H4G1 147 aa11.75□□□□□ -0.53
LDB3-208ENST00000623007 HIGD1BQ9P298 99 aa11.75□□□□□ -0.53
LDB3-208ENST00000623007 NF1P21359 2839 aa11.74□□□□□ -0.53
LDB3-208ENST00000623007 PLAC8L1A1L4L8 177 aa11.74□□□□□ -0.53
LDB3-208ENST00000623007 P0DMU3 169 aa11.74□□□□□ -0.53
LDB3-208ENST00000623007 FAM231AP0DMU4 169 aa11.74□□□□□ -0.53
LDB3-208ENST00000623007 FAM231CP0DMU5 169 aa11.74□□□□□ -0.53
LDB3-208ENST00000623007 FGF6P10767 208 aa11.74□□□□□ -0.53
LDB3-208ENST00000623007 Q6ZTI0 123 aa11.74□□□□□ -0.53
LDB3-208ENST00000623007 SHISA2Q6UWI4 295 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms