RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 DSCR9P59020 149 aa9.56□□□□□ -0.88
CCDC88A-214ENST00000621814 ETDBQ3ZM63 59 aa9.56□□□□□ -0.88
CCDC88A-214ENST00000621814 RNASE13Q5GAN3 156 aaKnown RBP9.56□□□□□ -0.88
CCDC88A-214ENST00000621814 C9orf85Q96MD7 179 aa9.56□□□□□ -0.88
CCDC88A-214ENST00000621814 TSPEAR-AS2P59090 65 aa9.55□□□□□ -0.88
CCDC88A-214ENST00000621814 COTL1Q14019 142 aa9.55□□□□□ -0.88
CCDC88A-214ENST00000621814 RBMY1A1P0DJD3 496 aaKnown RBP9.55□□□□□ -0.88
CCDC88A-214ENST00000621814 RBMY1CP0DJD4 496 aa9.55□□□□□ -0.88
CCDC88A-214ENST00000621814 RBMY1FQ15415 496 aaKnown RBP9.55□□□□□ -0.88
CCDC88A-214ENST00000621814 RRN3P1Q2M238 152 aa9.55□□□□□ -0.88
CCDC88A-214ENST00000621814 LGALS9O00182 355 aa9.54□□□□□ -0.88
CCDC88A-214ENST00000621814 SAMD13Q5VXD3 122 aa9.54□□□□□ -0.88
CCDC88A-214ENST00000621814 CEMP1Q6PRD7 247 aaPredicted RBP9.54□□□□□ -0.88
CCDC88A-214ENST00000621814 POM121L12Q8N7R1 296 aa9.54□□□□□ -0.88
CCDC88A-214ENST00000621814 ZNF702PQ9H963 129 aa9.54□□□□□ -0.88
CCDC88A-214ENST00000621814 WNK1Q9H4A3 2382 aa9.54□□□□□ -0.88
CCDC88A-214ENST00000621814 TRBV27A0A0K0K1C4 114 aa9.54□□□□□ -0.88
CCDC88A-214ENST00000621814 Q9UF83 564 aa9.54□□□□□ -0.88
CCDC88A-214ENST00000621814 EPG5Q9HCE0 2579 aa9.54□□□□□ -0.88
CCDC88A-214ENST00000621814 CCDC168Q8NDH2 2452 aa9.53□□□□□ -0.88
CCDC88A-214ENST00000621814 GAGE13Q4V321 117 aa9.53□□□□□ -0.88
CCDC88A-214ENST00000621814 TRPT1Q86TN4 253 aaKnown RBP9.53□□□□□ -0.88
CCDC88A-214ENST00000621814 TMEM141Q96I45 108 aa9.53□□□□□ -0.88
CCDC88A-214ENST00000621814 NACAE9PAV3 2078 aa9.53□□□□□ -0.88
CCDC88A-214ENST00000621814 H7C2G1 150 aa9.52□□□□□ -0.88
CCDC88A-214ENST00000621814 LGALS3P17931 250 aaKnown RBP9.52□□□□□ -0.88
CCDC88A-214ENST00000621814 PSMB2P49721 201 aa9.52□□□□□ -0.88
CCDC88A-214ENST00000621814 Q6YL49 198 aa9.52□□□□□ -0.88
CCDC88A-214ENST00000621814 UBE2E2Q96LR5 201 aa9.52□□□□□ -0.88
CCDC88A-214ENST00000621814 ZNF580Q9UK33 172 aa9.52□□□□□ -0.88
CCDC88A-214ENST00000621814 NF1P21359 2839 aa9.52□□□□□ -0.89
CCDC88A-214ENST00000621814 IGHV3OR16-12A0A075B7B8 117 aa9.52□□□□□ -0.89
CCDC88A-214ENST00000621814 ADARB2-AS1A8MUL3 147 aa9.52□□□□□ -0.89
CCDC88A-214ENST00000621814 ZNF469Q96JG9 3925 aaPredicted RBP9.52□□□□□ -0.89
CCDC88A-214ENST00000621814 A0A0J9YXV3 536 aa9.52□□□□□ -0.89
CCDC88A-214ENST00000621814 ELANEP08246 267 aa9.52□□□□□ -0.89
CCDC88A-214ENST00000621814 ZNF418Q8TF45 676 aaPredicted RBP9.52□□□□□ -0.89
CCDC88A-214ENST00000621814 BBC3Q96PG8 261 aaPredicted RBP9.52□□□□□ -0.89
CCDC88A-214ENST00000621814 TIMM17AQ99595 171 aa9.52□□□□□ -0.89
CCDC88A-214ENST00000621814 CHD6Q8TD26 2715 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 A0A096LNT2 108 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 A0A0J9YY99 117 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 A0A1W2PRX2 142 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 I3L3M4 83 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 IGHV4-31P0DP07 118 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 TMEM61Q8N0U2 210 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 SPXQ9BT56 116 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 VCX2Q9H322 139 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 TMEM238LA0A1B0GVL6 79 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 A6NJY4 79 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 J3QQQ9 107 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 PAPPA-AS1Q5QFB9 102 aa9.51□□□□□ -0.89
CCDC88A-214ENST00000621814 IGHV3-38A0A0C4DH36 116 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 A0A1B0GWB2 263 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 USP24Q9UPU5 2620 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 TRGV11A0A075B6L2 103 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 F8W1H4 67 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 J3QLI3 93 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 Q5PR19 223 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 DYNLRB2Q8TF09 96 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 PRRC2AP48634 2157 aaKnown RBP9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 INSL3P51460 131 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 Q96MF0 132 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 ODF3Q96PU9 254 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 LINC01587Q99440 93 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 TNFRSF18Q9Y5U5 241 aa9.5□□□□□ -0.89
CCDC88A-214ENST00000621814 TRAV2A0A0B4J234 112 aa9.49□□□□□ -0.89
CCDC88A-214ENST00000621814 RPL32P62910 135 aaKnown RBP9.49□□□□□ -0.89
CCDC88A-214ENST00000621814 C20orf203Q8NBC4 194 aa9.49□□□□□ -0.89
CCDC88A-214ENST00000621814 RAX2Q96IS3 184 aa9.49□□□□□ -0.89
CCDC88A-214ENST00000621814 SPAG8Q99932 426 aaPredicted RBP9.49□□□□□ -0.89
CCDC88A-214ENST00000621814 GTSF1LQ9H1H1 148 aa9.49□□□□□ -0.89
CCDC88A-214ENST00000621814 TRBV6-5A0A0K0K1A5 114 aa9.49□□□□□ -0.89
CCDC88A-214ENST00000621814 TSPAN13O95857 204 aa9.49□□□□□ -0.89
CCDC88A-214ENST00000621814 CD28P10747 220 aa9.49□□□□□ -0.89
CCDC88A-214ENST00000621814 DLX4Q92988 240 aaPredicted RBP9.49□□□□□ -0.89
CCDC88A-214ENST00000621814 NIPBLQ6KC79 2804 aaeCLIP9.48□□□□□ -0.891e-10■□□□□ 8.6
CCDC88A-214ENST00000621814 RBMY1BA6NDE4 496 aaKnown RBP9.48□□□□□ -0.89
CCDC88A-214ENST00000621814 RBMY1EA6NEQ0 496 aaKnown RBP9.48□□□□□ -0.89
CCDC88A-214ENST00000621814 RBMY1DP0C7P1 496 aaKnown RBP9.48□□□□□ -0.89
CCDC88A-214ENST00000621814 SCGB1C2P0DMR2 95 aa9.48□□□□□ -0.89
CCDC88A-214ENST00000621814 SPANXB1Q9NS25 103 aaPredicted RBP9.48□□□□□ -0.89
CCDC88A-214ENST00000621814 Q6ZSN1 163 aa9.48□□□□□ -0.89
CCDC88A-214ENST00000621814 TSSC4Q9Y5U2 329 aaPredicted RBP9.48□□□□□ -0.89
CCDC88A-214ENST00000621814 TMEM89A2RUT3 159 aa9.47□□□□□ -0.89
CCDC88A-214ENST00000621814 H3BMM0 161 aa9.47□□□□□ -0.89
CCDC88A-214ENST00000621814 LINC01619G3V211 115 aa9.47□□□□□ -0.89
CCDC88A-214ENST00000621814 IGLV4-3A0A075B6K6 122 aa9.47□□□□□ -0.89
CCDC88A-214ENST00000621814 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.47□□□□□ -0.89
CCDC88A-214ENST00000621814 IGKV2-29A2NJV5 120 aaPredicted RBP9.47□□□□□ -0.89
CCDC88A-214ENST00000621814 NSUN5P1Q3KNT7 163 aa9.47□□□□□ -0.89
CCDC88A-214ENST00000621814 NDUFA11Q86Y39 141 aa9.47□□□□□ -0.89
CCDC88A-214ENST00000621814 XCL2Q9UBD3 114 aa9.47□□□□□ -0.89
CCDC88A-214ENST00000621814 TRAV8-3A0A0A6YYJ7 113 aa9.46□□□□□ -0.89
CCDC88A-214ENST00000621814 PTH2Q96A98 100 aa9.46□□□□□ -0.89
CCDC88A-214ENST00000621814 A8MZ25 164 aa9.46□□□□□ -0.9
CCDC88A-214ENST00000621814 IGHV3-30P01768 117 aa9.46□□□□□ -0.9
CCDC88A-214ENST00000621814 CFC1BP0CG36 223 aa9.46□□□□□ -0.9
CCDC88A-214ENST00000621814 CFC1P0CG37 223 aa9.46□□□□□ -0.9
CCDC88A-214ENST00000621814 IGHV3-30-5P0DP03 117 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms