RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 C9orf118A6NHY6 69 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 F8VRH5 84 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 GTSCR1Q86UQ5 136 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 PCP2Q8IVA1 136 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 STHQ8IWL8 128 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 CLUHP3Q96NS8 147 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 CBY1Q9Y3M2 126 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 KIF25-AS1Q9Y6Z4 181 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 TRRAPQ9Y4A5 3859 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 J3KRW8 73 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 CDKN1BP46527 198 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 ZC2HC1BQ5TFG8 222 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 AMTNQ6UX39 209 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 Q6ZVH6 145 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 MDFIQ99750 246 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 C19orf73Q9NVV2 129 aa8.58□□□□□ -1.04
VRK3-223ENST00000601341 MRPL35Q9NZE8 188 aaKnown RBP8.58□□□□□ -1.04
VRK3-223ENST00000601341 GTF2H5Q6ZYL4 71 aa8.57□□□□□ -1.04
VRK3-223ENST00000601341 ERASQ7Z444 233 aa8.57□□□□□ -1.04
VRK3-223ENST00000601341 C14orf178Q8N769 122 aaPredicted RBP8.57□□□□□ -1.04
VRK3-223ENST00000601341 TRBV6-5A0A0K0K1A5 114 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 LINC00315P59091 139 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 PAPPA-AS1Q5QFB9 102 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 NEXN-AS1Q8NBZ9 246 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 SCGB3A1Q96QR1 104 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 TM2D2Q9BX73 214 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 TRBV25-1A0A075B6N4 114 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 IGKV2D-26A0A0A0MRZ7 120 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 GNRH2O43555 120 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 SPINK13Q1W4C9 94 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 AMMECR1LQ6DCA0 310 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 TRPT1Q86TN4 253 aaKnown RBP8.56□□□□□ -1.04
VRK3-223ENST00000601341 C9orf85Q96MD7 179 aa8.56□□□□□ -1.04
VRK3-223ENST00000601341 TRAV8-6A0A0B4J262 113 aa8.55□□□□□ -1.04
VRK3-223ENST00000601341 RBMY1BA6NDE4 496 aaKnown RBP8.55□□□□□ -1.04
VRK3-223ENST00000601341 RBMY1EA6NEQ0 496 aaKnown RBP8.55□□□□□ -1.04
VRK3-223ENST00000601341 RBMY1DP0C7P1 496 aaKnown RBP8.55□□□□□ -1.04
VRK3-223ENST00000601341 SYT8Q8NBV8 401 aa8.55□□□□□ -1.04
VRK3-223ENST00000601341 CHAC1Q9BUX1 264 aa8.55□□□□□ -1.04
VRK3-223ENST00000601341 TRAV12-2A0A075B6T6 113 aa8.54□□□□□ -1.04
VRK3-223ENST00000601341 TRAV12-3A0A0B4J271 114 aa8.54□□□□□ -1.04
VRK3-223ENST00000601341 VCYO14598 125 aa8.54□□□□□ -1.04
VRK3-223ENST00000601341 POLR2KP53803 58 aaKnown RBP8.54□□□□□ -1.04
VRK3-223ENST00000601341 KRTAP21-3Q3LHN1 58 aa8.54□□□□□ -1.04
VRK3-223ENST00000601341 C2orf66Q6UXQ4 117 aa8.54□□□□□ -1.04
VRK3-223ENST00000601341 WFDC10AQ9H1F0 79 aa8.54□□□□□ -1.04
VRK3-223ENST00000601341 CYSLTR1Q9Y271 337 aa8.54□□□□□ -1.04
VRK3-223ENST00000601341 CHTOPQ9Y3Y2 248 aaKnown RBP8.54□□□□□ -1.04
VRK3-223ENST00000601341 GAGE10A6NGK3 116 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 MGPP08493 103 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 OXLD1Q5BKU9 147 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 UFSP1Q6NVU6 142 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 OR5A1Q8NGJ0 315 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 TMEM141Q96I45 108 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 KIR2DL4Q99706 377 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 CSTL1Q9H114 145 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 AGRNO00468 2067 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 IGHV3-16A0A0C4DH30 117 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 TRBV27A0A0K0K1C4 114 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 SMIM13P0DJ93 91 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 PIK3CD-AS1Q5SR53 167 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 RPL39LQ96EH5 51 aaKnown RBP8.53□□□□□ -1.04
VRK3-223ENST00000601341 TIMM17AQ99595 171 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 EDA2RQ9HAV5 297 aa8.53□□□□□ -1.04
VRK3-223ENST00000601341 E9PLD3 99 aa8.52□□□□□ -1.05
VRK3-223ENST00000601341 CEND1Q8N111 149 aa8.52□□□□□ -1.05
VRK3-223ENST00000601341 BAALCQ8WXS3 180 aa8.52□□□□□ -1.05
VRK3-223ENST00000601341 MUC4Q99102 2169 aa8.52□□□□□ -1.05
VRK3-223ENST00000601341 TRGV11A0A075B6L2 103 aa8.51□□□□□ -1.05
VRK3-223ENST00000601341 K7EP34 96 aa8.51□□□□□ -1.05
VRK3-223ENST00000601341 INSP01308 110 aa8.51□□□□□ -1.05
VRK3-223ENST00000601341 MORN3Q6PF18 240 aaPredicted RBP8.51□□□□□ -1.05
VRK3-223ENST00000601341 OR11H2Q8NH07 326 aa8.51□□□□□ -1.05
VRK3-223ENST00000601341 IGHV1OR15-1A0A075B7D0 117 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 A0A1W2PPM0 123 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 GAGE12BA1L429 117 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 IGIPA6NJ69 53 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 EGFEM1PQ0D2K5 195 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 RHOHQ15669 191 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 SUMO4Q6EEV6 95 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 Q8N1Y9 231 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 CST9LQ9H4G1 147 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 XCL2Q9UBD3 114 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 ANK2Q01484 3957 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 MYMXA0A1B0GTQ4 84 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 FABP2P12104 132 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 RPL35AP18077 110 aaKnown RBP8.5□□□□□ -1.05
VRK3-223ENST00000601341 RBX1P62877 108 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 ZFP2Q6ZN57 461 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 C1QTNF4Q9BXJ3 329 aa8.5□□□□□ -1.05
VRK3-223ENST00000601341 PRSS29PA6NIE9 313 aa8.49□□□□□ -1.05
VRK3-223ENST00000601341 H3BUT2 72 aa8.49□□□□□ -1.05
VRK3-223ENST00000601341 GCSHP23434 173 aa8.49□□□□□ -1.05
VRK3-223ENST00000601341 RNASE8Q8TDE3 154 aaKnown RBP8.49□□□□□ -1.05
VRK3-223ENST00000601341 PTH2Q96A98 100 aa8.49□□□□□ -1.05
VRK3-223ENST00000601341 SDHAF1A6NFY7 115 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 RBMY1A1P0DJD3 496 aaKnown RBP8.48□□□□□ -1.05
VRK3-223ENST00000601341 RBMY1CP0DJD4 496 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 FXYD2P54710 66 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 PMVKQ15126 192 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms