RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-222	ENST00000600320	ELOB	Q15370	118 aa		13.83	□□□□□ -0.2
SHKBP1-222	ENST00000600320	ESRG	Q1W209	222 aa		13.83	□□□□□ -0.2
SHKBP1-222	ENST00000600320	MRPL51	Q4U2R6	128 aa	Known RBP	13.83	□□□□□ -0.2
SHKBP1-222	ENST00000600320	NEGR1	Q7Z3B1	354 aa		13.83	□□□□□ -0.2
SHKBP1-222	ENST00000600320	CBLN2	Q8IUK8	224 aa		13.83	□□□□□ -0.2
SHKBP1-222	ENST00000600320	RPL39L	Q96EH5	51 aa	Known RBP	13.83	□□□□□ -0.2
SHKBP1-222	ENST00000600320	TGIF2-C20orf24	A0A0A6YYL0	155 aa		13.82	□□□□□ -0.2
SHKBP1-222	ENST00000600320	SMKR1	H3BMG3	65 aa		13.82	□□□□□ -0.2
SHKBP1-222	ENST00000600320		H7C1H1	209 aa		13.82	□□□□□ -0.2
SHKBP1-222	ENST00000600320	RPL36A	P83881	106 aa	Known RBP	13.82	□□□□□ -0.2
SHKBP1-222	ENST00000600320	TMEM136	Q6ZRR5	245 aa		13.82	□□□□□ -0.2
SHKBP1-222	ENST00000600320	RPL36AL	Q969Q0	106 aa	Known RBP	13.82	□□□□□ -0.2
SHKBP1-222	ENST00000600320	YPEL4	Q96NS1	127 aa		13.82	□□□□□ -0.2
SHKBP1-222	ENST00000600320	TRBV7-3	A0A075B6L6	115 aa		13.81	□□□□□ -0.2
SHKBP1-222	ENST00000600320	NCR2	O95944	276 aa		13.81	□□□□□ -0.2
SHKBP1-222	ENST00000600320	UBE2D3	P61077	147 aa		13.81	□□□□□ -0.2
SHKBP1-222	ENST00000600320	UBE2D2	P62837	147 aa		13.81	□□□□□ -0.2
SHKBP1-222	ENST00000600320	ATP6V0E2	Q8NHE4	81 aa		13.81	□□□□□ -0.2
SHKBP1-222	ENST00000600320	MRAP2	Q96G30	205 aa		13.81	□□□□□ -0.2
SHKBP1-222	ENST00000600320	ATP6V1G1	O75348	118 aa		13.8	□□□□□ -0.2
SHKBP1-222	ENST00000600320	RPS10	P46783	165 aa	Known RBP	13.8	□□□□□ -0.2
SHKBP1-222	ENST00000600320	LYPD5	Q6UWN5	251 aa		13.8	□□□□□ -0.2
SHKBP1-222	ENST00000600320	DNAJC30	Q96LL9	226 aa		13.8	□□□□□ -0.2
SHKBP1-222	ENST00000600320	NIT2	Q9NQR4	276 aa		13.8	□□□□□ -0.2
SHKBP1-222	ENST00000600320	LINC00588	Q9Y4M8	146 aa		13.8	□□□□□ -0.2
SHKBP1-222	ENST00000600320	LINC00476	Q8WZB0	136 aa		13.79	□□□□□ -0.2
SHKBP1-222	ENST00000600320	FRZB	Q92765	325 aa		13.79	□□□□□ -0.2
SHKBP1-222	ENST00000600320	SMCO4	Q9NRQ5	59 aa		13.79	□□□□□ -0.2
SHKBP1-222	ENST00000600320	TRBV24-1	A0A075B6N3	115 aa		13.78	□□□□□ -0.2
SHKBP1-222	ENST00000600320	IGHV3-38	A0A0C4DH36	116 aa		13.78	□□□□□ -0.2
SHKBP1-222	ENST00000600320	LGALS9C	Q6DKI2	356 aa		13.78	□□□□□ -0.2
SHKBP1-222	ENST00000600320	SH2D6	Q7Z4S9	175 aa		13.78	□□□□□ -0.2
SHKBP1-222	ENST00000600320	TNFRSF18	Q9Y5U5	241 aa		13.78	□□□□□ -0.2
SHKBP1-222	ENST00000600320	SCO1	O75880	301 aa		13.77	□□□□□ -0.21
SHKBP1-222	ENST00000600320	CCL18	P55774	89 aa		13.77	□□□□□ -0.21
SHKBP1-222	ENST00000600320	OR10J3	Q5JRS4	329 aa		13.77	□□□□□ -0.21
SHKBP1-222	ENST00000600320	NRAC	Q8N912	160 aa		13.77	□□□□□ -0.21
SHKBP1-222	ENST00000600320		D6R8Y8	96 aa		13.76	□□□□□ -0.21
SHKBP1-222	ENST00000600320	LY6G6C	O95867	125 aa		13.76	□□□□□ -0.21
SHKBP1-222	ENST00000600320	UBE2DNL	Q8IWF7	75 aa		13.76	□□□□□ -0.21
SHKBP1-222	ENST00000600320	GTSF1L	Q9H1H1	148 aa		13.76	□□□□□ -0.21
SHKBP1-222	ENST00000600320	ALMS1	Q8TCU4	4167 aa		13.76	□□□□□ -0.21
SHKBP1-222	ENST00000600320	TRBV6-5	A0A0K0K1A5	114 aa		13.75	□□□□□ -0.21
SHKBP1-222	ENST00000600320	CKS2	P33552	79 aa		13.75	□□□□□ -0.21
SHKBP1-222	ENST00000600320	TENM2	Q9NT68	2774 aa		13.74	□□□□□ -0.21
SHKBP1-222	ENST00000600320	TIRAP	P58753	221 aa		13.74	□□□□□ -0.21
SHKBP1-222	ENST00000600320	GNB1L	Q9BYB4	327 aa		13.74	□□□□□ -0.21
SHKBP1-222	ENST00000600320	MRPS16	Q9Y3D3	137 aa	Known RBP	13.74	□□□□□ -0.21
SHKBP1-222	ENST00000600320	LCE6A	A0A183	80 aa		13.73	□□□□□ -0.21
SHKBP1-222	ENST00000600320	HLA-DQA1	P01909	254 aa		13.73	□□□□□ -0.21
SHKBP1-222	ENST00000600320	KIAA1644	Q3SXP7	199 aa		13.73	□□□□□ -0.21
SHKBP1-222	ENST00000600320	COX19	Q49B96	90 aa		13.73	□□□□□ -0.21
SHKBP1-222	ENST00000600320	DEFB104A	Q8WTQ1	72 aa		13.73	□□□□□ -0.21
SHKBP1-222	ENST00000600320	NPY	P01303	97 aa		13.72	□□□□□ -0.21
SHKBP1-222	ENST00000600320	S100A1	P23297	94 aa		13.72	□□□□□ -0.21
SHKBP1-222	ENST00000600320	DAZ4	Q86SG3	579 aa	Known RBP	13.72	□□□□□ -0.21
SHKBP1-222	ENST00000600320	ORMDL3	Q8N138	153 aa		13.72	□□□□□ -0.21
SHKBP1-222	ENST00000600320	ST20	Q9HBF5	79 aa		13.72	□□□□□ -0.21
SHKBP1-222	ENST00000600320	DAZ3	Q9NR90	486 aa	Known RBP	13.72	□□□□□ -0.21
SHKBP1-222	ENST00000600320	VPS13D	Q5THJ4	4388 aa		13.71	□□□□□ -0.21
SHKBP1-222	ENST00000600320	SDHAF1	A6NFY7	115 aa		13.71	□□□□□ -0.21
SHKBP1-222	ENST00000600320	TNFRSF6B	O95407	300 aa		13.71	□□□□□ -0.21
SHKBP1-222	ENST00000600320	APCS	P02743	223 aa		13.71	□□□□□ -0.21
SHKBP1-222	ENST00000600320	PPBP	P02775	128 aa		13.71	□□□□□ -0.21
SHKBP1-222	ENST00000600320	LELP1	Q5T871	98 aa		13.71	□□□□□ -0.21
SHKBP1-222	ENST00000600320	NTM-AS1	Q6ZSK4	140 aa		13.71	□□□□□ -0.21
SHKBP1-222	ENST00000600320	UPK3B	Q9BT76	320 aa		13.71	□□□□□ -0.21
SHKBP1-222	ENST00000600320	MRPL18	Q9H0U6	180 aa	Known RBP	13.71	□□□□□ -0.21
SHKBP1-222	ENST00000600320	DNAH1	Q9P2D7	4330 aa		13.71	□□□□□ -0.22
SHKBP1-222	ENST00000600320	POLR2K	P53803	58 aa	Known RBP	13.7	□□□□□ -0.22
SHKBP1-222	ENST00000600320	WFDC10B	Q8IUB3	73 aa		13.7	□□□□□ -0.22
SHKBP1-222	ENST00000600320	PRELID3A	Q96N28	172 aa		13.7	□□□□□ -0.22
SHKBP1-222	ENST00000600320	TMEM70	Q9BUB7	260 aa		13.7	□□□□□ -0.22
SHKBP1-222	ENST00000600320	PPP1R17	O96001	155 aa		13.69	□□□□□ -0.22
SHKBP1-222	ENST00000600320	MT-ND6	P03923	174 aa		13.69	□□□□□ -0.22
SHKBP1-222	ENST00000600320	SUMO2	P61956	95 aa	Known RBP	13.69	□□□□□ -0.22
SHKBP1-222	ENST00000600320	TRAPPC1	Q9Y5R8	145 aa		13.68	□□□□□ -0.22
SHKBP1-222	ENST00000600320	TRBV6-8	A0A0A6YYG3	113 aa		13.67	□□□□□ -0.22
SHKBP1-222	ENST00000600320	COLCA2	A8K830	154 aa		13.67	□□□□□ -0.22
SHKBP1-222	ENST00000600320	FABP9	Q0Z7S8	132 aa		13.67	□□□□□ -0.22
SHKBP1-222	ENST00000600320	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	13.67	□□□□□ -0.22
SHKBP1-222	ENST00000600320	C20orf78	Q9BR46	151 aa		13.67	□□□□□ -0.22
SHKBP1-222	ENST00000600320	SACS	Q9NZJ4	4579 aa		13.66	□□□□□ -0.22
SHKBP1-222	ENST00000600320	PHOX2A	O14813	284 aa		13.66	□□□□□ -0.22
SHKBP1-222	ENST00000600320	PMCH	P20382	165 aa		13.66	□□□□□ -0.22
SHKBP1-222	ENST00000600320	IGLV2-18	A0A075B6J9	118 aa		13.65	□□□□□ -0.22
SHKBP1-222	ENST00000600320	TRBV27	A0A0K0K1C4	114 aa		13.65	□□□□□ -0.22
SHKBP1-222	ENST00000600320		I3L3M4	83 aa		13.65	□□□□□ -0.22
SHKBP1-222	ENST00000600320	COTL1	Q14019	142 aa		13.65	□□□□□ -0.22
SHKBP1-222	ENST00000600320	TMEM97	Q5BJF2	176 aa		13.65	□□□□□ -0.22
SHKBP1-222	ENST00000600320		Q9H8V8	135 aa		13.65	□□□□□ -0.22
SHKBP1-222	ENST00000600320	TRAV8-6	A0A0B4J262	113 aa		13.64	□□□□□ -0.23
SHKBP1-222	ENST00000600320	TSHB	P01222	138 aa		13.64	□□□□□ -0.23
SHKBP1-222	ENST00000600320	ALKBH7	Q9BT30	221 aa	Predicted RBP	13.64	□□□□□ -0.23
SHKBP1-222	ENST00000600320	SMIM2	Q9BVW6	85 aa		13.64	□□□□□ -0.23
SHKBP1-222	ENST00000600320	LAMTOR2	Q9Y2Q5	125 aa		13.64	□□□□□ -0.23
SHKBP1-222	ENST00000600320	VCY	O14598	125 aa		13.63	□□□□□ -0.23
SHKBP1-222	ENST00000600320	SIVA1	O15304	175 aa		13.63	□□□□□ -0.23
SHKBP1-222	ENST00000600320	RPL32	P62910	135 aa	Known RBP	13.63	□□□□□ -0.23
SHKBP1-222	ENST00000600320	IQCJ	Q1A5X6	159 aa		13.63	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 107 ms