RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 GAGE5Q13069 117 aa11.42□□□□□ -0.58
SHKBP1-219ENST00000599575 GAGE13Q4V321 117 aa11.42□□□□□ -0.58
SHKBP1-219ENST00000599575 SUMO4Q6EEV6 95 aa11.42□□□□□ -0.58
SHKBP1-219ENST00000599575 CLRN3Q8NCR9 226 aa11.42□□□□□ -0.58
SHKBP1-219ENST00000599575 BTF3L4Q96K17 158 aa11.42□□□□□ -0.58
SHKBP1-219ENST00000599575 NIT2Q9NQR4 276 aa11.42□□□□□ -0.58
SHKBP1-219ENST00000599575 ALMS1Q8TCU4 4167 aa11.41□□□□□ -0.58
SHKBP1-219ENST00000599575 UBE2D3P61077 147 aa11.41□□□□□ -0.58
SHKBP1-219ENST00000599575 UBE2D2P62837 147 aa11.41□□□□□ -0.58
SHKBP1-219ENST00000599575 TMEM97Q5BJF2 176 aa11.41□□□□□ -0.58
SHKBP1-219ENST00000599575 DAZ4Q86SG3 579 aaKnown RBP11.41□□□□□ -0.58
SHKBP1-219ENST00000599575 NEXN-AS1Q8NBZ9 246 aa11.41□□□□□ -0.58
SHKBP1-219ENST00000599575 ZNRF2Q8NHG8 242 aa11.41□□□□□ -0.58
SHKBP1-219ENST00000599575 MRAP2Q96G30 205 aa11.41□□□□□ -0.58
SHKBP1-219ENST00000599575 DAZ3Q9NR90 486 aaKnown RBP11.41□□□□□ -0.58
SHKBP1-219ENST00000599575 TNFRSF18Q9Y5U5 241 aa11.41□□□□□ -0.58
SHKBP1-219ENST00000599575 A0A1B0GXF2 115 aa11.4□□□□□ -0.58
SHKBP1-219ENST00000599575 C7orf77A4D0Y5 90 aa11.4□□□□□ -0.58
SHKBP1-219ENST00000599575 PPP1R17O96001 155 aa11.4□□□□□ -0.58
SHKBP1-219ENST00000599575 APOC3P02656 99 aa11.4□□□□□ -0.58
SHKBP1-219ENST00000599575 GATD1Q8NB37 220 aa11.4□□□□□ -0.58
SHKBP1-219ENST00000599575 S100PP25815 95 aa11.39□□□□□ -0.59
SHKBP1-219ENST00000599575 LELP1Q5T871 98 aa11.39□□□□□ -0.59
SHKBP1-219ENST00000599575 Q9H8V8 135 aa11.39□□□□□ -0.59
SHKBP1-219ENST00000599575 DNAH1Q9P2D7 4330 aa11.38□□□□□ -0.59
SHKBP1-219ENST00000599575 TRAV8-6A0A0B4J262 113 aa11.38□□□□□ -0.59
SHKBP1-219ENST00000599575 RAB4AP20338 218 aa11.38□□□□□ -0.59
SHKBP1-219ENST00000599575 CAMPP49913 170 aa11.38□□□□□ -0.59
SHKBP1-219ENST00000599575 FAM104BQ5XKR9 115 aa11.38□□□□□ -0.59
SHKBP1-219ENST00000599575 Q9UF83 564 aa11.38□□□□□ -0.59
SHKBP1-219ENST00000599575 VPS13DQ5THJ4 4388 aa11.37□□□□□ -0.59
SHKBP1-219ENST00000599575 SACSQ9NZJ4 4579 aa11.37□□□□□ -0.59
SHKBP1-219ENST00000599575 SIVA1O15304 175 aa11.37□□□□□ -0.59
SHKBP1-219ENST00000599575 BTF3P20290 206 aaKnown RBP11.37□□□□□ -0.59
SHKBP1-219ENST00000599575 TTC32Q5I0X7 151 aa11.37□□□□□ -0.59
SHKBP1-219ENST00000599575 MRPL54Q6P161 138 aaKnown RBP11.37□□□□□ -0.59
SHKBP1-219ENST00000599575 TRBV6-5A0A0K0K1A5 114 aa11.36□□□□□ -0.59
SHKBP1-219ENST00000599575 PPBPP02775 128 aa11.36□□□□□ -0.59
SHKBP1-219ENST00000599575 AMN1Q8IY45 258 aa11.36□□□□□ -0.59
SHKBP1-219ENST00000599575 RNF185Q96GF1 192 aa11.36□□□□□ -0.59
SHKBP1-219ENST00000599575 RPS10P5Q9NQ39 176 aa11.36□□□□□ -0.59
SHKBP1-219ENST00000599575 TRAV9-2A0A087WT02 112 aa11.35□□□□□ -0.59
SHKBP1-219ENST00000599575 COX19Q49B96 90 aa11.35□□□□□ -0.59
SHKBP1-219ENST00000599575 DNAH10OSP0CZ25 163 aa11.34□□□□□ -0.59
SHKBP1-219ENST00000599575 PKIAP61925 76 aa11.34□□□□□ -0.59
SHKBP1-219ENST00000599575 OR10J3Q5JRS4 329 aa11.34□□□□□ -0.59
SHKBP1-219ENST00000599575 SLC7A5P1Q8MH63 180 aa11.34□□□□□ -0.59
SHKBP1-219ENST00000599575 TRBV6-8A0A0A6YYG3 113 aa11.33□□□□□ -0.6
SHKBP1-219ENST00000599575 TRAV26-2A0A0B4J265 109 aa11.33□□□□□ -0.6
SHKBP1-219ENST00000599575 IGHV3-38A0A0C4DH36 116 aa11.33□□□□□ -0.6
SHKBP1-219ENST00000599575 NBDYA0A0U1RRE5 68 aa11.33□□□□□ -0.6
SHKBP1-219ENST00000599575 RYR2Q92736 4967 aa11.33□□□□□ -0.6
SHKBP1-219ENST00000599575 MRPL51Q4U2R6 128 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-219ENST00000599575 LINC01556Q5JQF7 62 aa11.32□□□□□ -0.6
SHKBP1-219ENST00000599575 Q6ZR54 194 aa11.32□□□□□ -0.6
SHKBP1-219ENST00000599575 C10orf126Q8N4M7 172 aa11.32□□□□□ -0.6
SHKBP1-219ENST00000599575 CHCHD7Q9BUK0 85 aa11.32□□□□□ -0.6
SHKBP1-219ENST00000599575 ST20Q9HBF5 79 aa11.32□□□□□ -0.6
SHKBP1-219ENST00000599575 TRBV24-1A0A075B6N3 115 aa11.31□□□□□ -0.6
SHKBP1-219ENST00000599575 PHOX2AO14813 284 aa11.31□□□□□ -0.6
SHKBP1-219ENST00000599575 NCR2O95944 276 aa11.31□□□□□ -0.6
SHKBP1-219ENST00000599575 CKS2P33552 79 aa11.31□□□□□ -0.6
SHKBP1-219ENST00000599575 C20orf78Q9BR46 151 aa11.31□□□□□ -0.6
SHKBP1-219ENST00000599575 TRBV25-1A0A075B6N4 114 aa11.3□□□□□ -0.6
SHKBP1-219ENST00000599575 SDHAF1A6NFY7 115 aa11.3□□□□□ -0.6
SHKBP1-219ENST00000599575 COTL1Q14019 142 aa11.3□□□□□ -0.6
SHKBP1-219ENST00000599575 IQCJQ1A5X6 159 aa11.3□□□□□ -0.6
SHKBP1-219ENST00000599575 WFDC10BQ8IUB3 73 aa11.3□□□□□ -0.6
SHKBP1-219ENST00000599575 LAMTOR2Q9Y2Q5 125 aa11.3□□□□□ -0.6
SHKBP1-219ENST00000599575 IGLV2-18A0A075B6J9 118 aa11.29□□□□□ -0.6
SHKBP1-219ENST00000599575 TRBV27A0A0K0K1C4 114 aa11.29□□□□□ -0.6
SHKBP1-219ENST00000599575 RPL32P62910 135 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-219ENST00000599575 ORMDL3Q8N138 153 aa11.29□□□□□ -0.6
SHKBP1-219ENST00000599575 RPL39LQ96EH5 51 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-219ENST00000599575 GNB1LQ9BYB4 327 aa11.29□□□□□ -0.6
SHKBP1-219ENST00000599575 URGCP-MRPS24S4R325 110 aa11.29□□□□□ -0.6
SHKBP1-219ENST00000599575 RYR3Q15413 4870 aa11.29□□□□□ -0.6
SHKBP1-219ENST00000599575 IGHV1-24A0A0C4DH33 117 aa11.28□□□□□ -0.6
SHKBP1-219ENST00000599575 I3L3M4 83 aa11.28□□□□□ -0.6
SHKBP1-219ENST00000599575 VCYO14598 125 aa11.28□□□□□ -0.6
SHKBP1-219ENST00000599575 TCAPO15273 167 aa11.28□□□□□ -0.6
SHKBP1-219ENST00000599575 HLA-DQA1P01909 254 aa11.28□□□□□ -0.6
SHKBP1-219ENST00000599575 MT-ND6P03923 174 aa11.28□□□□□ -0.6
SHKBP1-219ENST00000599575 POLR2KP53803 58 aaKnown RBP11.28□□□□□ -0.6
SHKBP1-219ENST00000599575 SUMO2P61956 95 aaKnown RBP11.28□□□□□ -0.6
SHKBP1-219ENST00000599575 NRACQ8N912 160 aa11.28□□□□□ -0.6
SHKBP1-219ENST00000599575 TMEM70Q9BUB7 260 aa11.28□□□□□ -0.6
SHKBP1-219ENST00000599575 TMEM136Q6ZRR5 245 aa11.27□□□□□ -0.61
SHKBP1-219ENST00000599575 NIT1Q86X76 327 aa11.27□□□□□ -0.61
SHKBP1-219ENST00000599575 KMT2AQ03164 3969 aa11.26□□□□□ -0.61
SHKBP1-219ENST00000599575 A0A087WX48 190 aa11.26□□□□□ -0.61
SHKBP1-219ENST00000599575 D6R8Y8 96 aa11.26□□□□□ -0.61
SHKBP1-219ENST00000599575 PMCHP20382 165 aa11.26□□□□□ -0.61
SHKBP1-219ENST00000599575 RPS10P46783 165 aaKnown RBP11.26□□□□□ -0.61
SHKBP1-219ENST00000599575 LAGE3Q14657 143 aa11.26□□□□□ -0.61
SHKBP1-219ENST00000599575 ELOBQ15370 118 aa11.26□□□□□ -0.61
SHKBP1-219ENST00000599575 NTM-AS1Q6ZSK4 140 aa11.26□□□□□ -0.61
SHKBP1-219ENST00000599575 H7C423 109 aa11.25□□□□□ -0.61
SHKBP1-219ENST00000599575 TNFRSF6BO95407 300 aa11.25□□□□□ -0.61
SHKBP1-219ENST00000599575 C1orf134Q5TEV5 83 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms