RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	TRAV13-2	A0A0B4J235	113 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790		B4DSR2	109 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790		G3V318	75 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	INS	P01308	110 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	RPL39L	Q96EH5	51 aa	Known RBP	2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	SIRPD	Q9H106	197 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	PRO3102	Q9H379	93 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	MTOR	P42345	2549 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	NOTCH1	P46531	2555 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790		A0A0J9YY99	117 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	OVOL3	O00110	214 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	HIST2H2BC	Q6DN03	193 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	HIST2H2BD	Q6DRA6	164 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	C15orf53	Q8NAA6	179 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	SMAD5-AS1	Q9Y6J3	95 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	LYST	Q99698	3801 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	TNC	P24821	2201 aa		2.7	□□□□□ -1.98
VMP1-216	ENST00000592790	TRAV26-1	A0A087WT03	109 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	TRBV30	A0A0K0K1B3	111 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790		H3BUX3	64 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	LGALS9	O00182	355 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	TIMM17B	O60830	172 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	UBE2D1	P51668	147 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	NFE4	Q86UQ8	179 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	GPHB5	Q86YW7	130 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	TMEM86B	Q8N661	226 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	MAPKAPK5-AS1	Q8N8E1	139 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	CARD19	Q96LW7	228 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	CCDC140	Q96MF4	163 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	TTTY13	Q9BZ97	58 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	IMUP	Q9GZP8	106 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	ICOS	Q9Y6W8	199 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	PCSK5	Q92824	1860 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	MED13	Q9UHV7	2174 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	ADARB2-AS1	A8MUL3	147 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790		J3QLI3	93 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	TCL1B	O95988	128 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	IGKV3-20	P01619	116 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	ELANE	P08246	267 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	TMEM219	Q86XT9	240 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	C20orf203	Q8NBC4	194 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	PYGO1	Q9Y3Y4	419 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	IGLV2-18	A0A075B6J9	118 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	TRAV8-3	A0A0A6YYJ7	113 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	TRBV27	A0A0K0K1C4	114 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	IGF1	P05019	195 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	LY6D	Q14210	128 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	PIK3CD-AS1	Q5SR53	167 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	MUSTN1	Q8IVN3	82 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	OR13C6P	Q8NH95	151 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	CDIP1	Q9H305	208 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	DNAH3	Q8TD57	4116 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	IGHV3-64	A0A075B6Q5	118 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	IGHV1-58	A0A0C4DH39	117 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	FAM240A	A0A1B0GVK7	77 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	GNRH2	O43555	120 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	IGHG2	P01859	326 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	UBE2D3	P61077	147 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	UBE2D2	P62837	147 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	MRGPRG-AS1	Q2M3A8	158 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	C9orf153	Q5TBE3	101 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	PRIMA1	Q86XR5	153 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	PTH2	Q96A98	100 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	BPESC1	Q9GZL8	116 aa		2.69	□□□□□ -1.98
VMP1-216	ENST00000592790	RAI1	Q7Z5J4	1906 aa	Predicted RBP	2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	DMXL1	Q9Y485	3027 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	TINCR	A0A1B0GVN0	87 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	IGHV3-30	P01768	117 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	IGHV3-30-5	P0DP03	117 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	CRIP2	P52943	208 aa	Predicted RBP	2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	MIA	Q16674	131 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	STH	Q8IWL8	128 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	KLHL30-AS1	Q8NEE0	82 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	PHLDA1	Q8WV24	401 aa	Predicted RBP	2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	RNF183	Q96D59	192 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	DSCAM	O60469	2012 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	TMEM223	A0PJW6	202 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790		H0YGX0	51 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	PRB4	P10163	310 aa	Predicted RBP	2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	NDUFV3	P56181	108 aa	Known RBP	2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	ZFAND2A	Q8N6M9	145 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	ITLN2	Q8WWU7	325 aa	Predicted RBP	2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	IGHV3OR16-10	A0A075B7F0	116 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790		H3BQ85	93 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	ATOX1	O00244	68 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	NXPH4	O95158	308 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	IGHV3-33	P01772	117 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	MSMB	P08118	114 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	POLR2K	P53803	58 aa	Known RBP	2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	LINC00643	Q86TS7	51 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	NRGN	Q92686	78 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	MALRD1	Q5VYJ5	2156 aa		2.68	□□□□□ -1.98
VMP1-216	ENST00000592790	CAD	P27708	2225 aa		2.67	□□□□□ -1.98
VMP1-216	ENST00000592790		B5MCH6	92 aa		2.67	□□□□□ -1.98
VMP1-216	ENST00000592790	KLK9	Q2XQG4	91 aa		2.67	□□□□□ -1.98
VMP1-216	ENST00000592790	LINC00527	Q9UJ94	153 aa		2.67	□□□□□ -1.98
VMP1-216	ENST00000592790	KLK9	Q9UKQ9	250 aa		2.67	□□□□□ -1.98
VMP1-216	ENST00000592790	SOCS3	O14543	225 aa		2.67	□□□□□ -1.98
VMP1-216	ENST00000592790	SPINK13	Q1W4C9	94 aa		2.67	□□□□□ -1.98
VMP1-216	ENST00000592790		Q8N1Y9	231 aa		2.67	□□□□□ -1.98

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