RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CDPF1Q6NVV7 123 aa15.99■□□□□ 0.15
SHMT1-206ENST00000579558 RPP21Q9H633 154 aaKnown RBP15.99■□□□□ 0.15
SHMT1-206ENST00000579558 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.98■□□□□ 0.15
SHMT1-206ENST00000579558 EIF5A2Q9GZV4 153 aaKnown RBP15.98■□□□□ 0.15
SHMT1-206ENST00000579558 ABCA13Q86UQ4 5058 aa15.98■□□□□ 0.15
SHMT1-206ENST00000579558 DNAH5Q8TE73 4624 aa15.98■□□□□ 0.15
SHMT1-206ENST00000579558 TM2D2Q9BX73 214 aa15.97■□□□□ 0.15
SHMT1-206ENST00000579558 TRAV8-3A0A0A6YYJ7 113 aa15.96■□□□□ 0.15
SHMT1-206ENST00000579558 LRCOL1A6NCL2 159 aa15.96■□□□□ 0.15
SHMT1-206ENST00000579558 TRGC1P0CF51 173 aa15.96■□□□□ 0.15
SHMT1-206ENST00000579558 CTRLP40313 264 aa15.96■□□□□ 0.15
SHMT1-206ENST00000579558 A0A087WX48 190 aa15.95■□□□□ 0.14
SHMT1-206ENST00000579558 TRBV6-8A0A0A6YYG3 113 aa15.95■□□□□ 0.14
SHMT1-206ENST00000579558 NTF3P20783 257 aa15.95■□□□□ 0.14
SHMT1-206ENST00000579558 KCNIP4Q6PIL6 250 aa15.95■□□□□ 0.14
SHMT1-206ENST00000579558 FAM210AQ96ND0 272 aa15.95■□□□□ 0.14
SHMT1-206ENST00000579558 HSPG2P98160 4391 aa15.95■□□□□ 0.14
SHMT1-206ENST00000579558 SUMO4Q6EEV6 95 aa15.94■□□□□ 0.14
SHMT1-206ENST00000579558 WDR73Q6P4I2 378 aa15.94■□□□□ 0.14
SHMT1-206ENST00000579558 CHCHD7Q9BUK0 85 aa15.94■□□□□ 0.14
SHMT1-206ENST00000579558 H7C1H1 209 aa15.93■□□□□ 0.14
SHMT1-206ENST00000579558 DPH3P1Q9H4G8 78 aa15.93■□□□□ 0.14
SHMT1-206ENST00000579558 KLK12Q9UKR0 248 aa15.93■□□□□ 0.14
SHMT1-206ENST00000579558 TMEM262E9PQX1 116 aa15.92■□□□□ 0.14
SHMT1-206ENST00000579558 M0QY20 66 aa15.92■□□□□ 0.14
SHMT1-206ENST00000579558 GATCO43716 136 aaKnown RBP15.92■□□□□ 0.14
SHMT1-206ENST00000579558 NDUFS6O75380 124 aaKnown RBP15.92■□□□□ 0.14
SHMT1-206ENST00000579558 SMIM7Q9BQ49 75 aa15.92■□□□□ 0.14
SHMT1-206ENST00000579558 ELOBQ15370 118 aa15.91■□□□□ 0.14
SHMT1-206ENST00000579558 TWIST1Q15672 202 aa15.91■□□□□ 0.14
SHMT1-206ENST00000579558 TMEM97Q5BJF2 176 aa15.91■□□□□ 0.14
SHMT1-206ENST00000579558 DNAJC30Q96LL9 226 aa15.91■□□□□ 0.14
SHMT1-206ENST00000579558 CNFNQ9BYD5 112 aa15.91■□□□□ 0.14
SHMT1-206ENST00000579558 FAM231DQ6ZW35 169 aa15.9■□□□□ 0.14
SHMT1-206ENST00000579558 CHCHD5Q9BSY4 110 aa15.9■□□□□ 0.14
SHMT1-206ENST00000579558 APOBP04114 4563 aaKnown RBP15.9■□□□□ 0.14
SHMT1-206ENST00000579558 SRP19P09132 144 aaKnown RBP15.89■□□□□ 0.13
SHMT1-206ENST00000579558 Q8N814 137 aa15.89■□□□□ 0.13
SHMT1-206ENST00000579558 MAPKAPK5-AS1Q8N8E1 139 aa15.89■□□□□ 0.13
SHMT1-206ENST00000579558 GTSF1Q8WW33 167 aa15.89■□□□□ 0.13
SHMT1-206ENST00000579558 UBE2WQ96B02 151 aa15.89■□□□□ 0.13
SHMT1-206ENST00000579558 RMI2Q96E14 147 aa15.89■□□□□ 0.13
SHMT1-206ENST00000579558 ZNF727A8MUV8 499 aa15.88■□□□□ 0.13
SHMT1-206ENST00000579558 RASL11AQ6T310 242 aa15.88■□□□□ 0.13
SHMT1-206ENST00000579558 NTM-AS1Q6ZSK4 140 aa15.88■□□□□ 0.13
SHMT1-206ENST00000579558 COX11Q9Y6N1 276 aa15.88■□□□□ 0.13
SHMT1-206ENST00000579558 IGLV5-52A0A0A0MRZ9 124 aa15.87■□□□□ 0.13
SHMT1-206ENST00000579558 A8MWL6 223 aa15.87■□□□□ 0.13
SHMT1-206ENST00000579558 PKIAP61925 76 aa15.87■□□□□ 0.13
SHMT1-206ENST00000579558 NTN5Q8WTR8 489 aaPredicted RBP15.87■□□□□ 0.13
SHMT1-206ENST00000579558 IGKV2D-24A0A075B6R9 120 aa15.86■□□□□ 0.13
SHMT1-206ENST00000579558 KRTAP10-1P60331 282 aa15.86■□□□□ 0.13
SHMT1-206ENST00000579558 MPV17L2Q567V2 206 aa15.86■□□□□ 0.13
SHMT1-206ENST00000579558 LINC01551Q86U37 167 aa15.86■□□□□ 0.13
SHMT1-206ENST00000579558 TRBV25-1A0A075B6N4 114 aa15.85■□□□□ 0.13
SHMT1-206ENST00000579558 GCSHP23434 173 aa15.85■□□□□ 0.13
SHMT1-206ENST00000579558 WFDC2Q14508 124 aa15.85■□□□□ 0.13
SHMT1-206ENST00000579558 CT83Q5H943 113 aa15.85■□□□□ 0.13
SHMT1-206ENST00000579558 C15orf54Q8N8G6 183 aa15.85■□□□□ 0.13
SHMT1-206ENST00000579558 TEX261Q6UWH6 196 aa15.84■□□□□ 0.13
SHMT1-206ENST00000579558 SMIM15Q7Z3B0 74 aa15.84■□□□□ 0.13
SHMT1-206ENST00000579558 PGLYRP4Q96LB8 373 aa15.84■□□□□ 0.13
SHMT1-206ENST00000579558 NIT2Q9NQR4 276 aa15.84■□□□□ 0.13
SHMT1-206ENST00000579558 IGHV1-24A0A0C4DH33 117 aa15.83■□□□□ 0.12
SHMT1-206ENST00000579558 LECT2O14960 151 aa15.83■□□□□ 0.12
SHMT1-206ENST00000579558 ANGP03950 147 aaKnown RBP15.83■□□□□ 0.12
SHMT1-206ENST00000579558 Q0VG73 95 aa15.83■□□□□ 0.12
SHMT1-206ENST00000579558 KRTAP4-5Q9BYR2 181 aa15.83■□□□□ 0.12
SHMT1-206ENST00000579558 CRPP02741 224 aa15.82■□□□□ 0.12
SHMT1-206ENST00000579558 GAGE6Q13070 117 aa15.82■□□□□ 0.12
SHMT1-206ENST00000579558 IQCJQ1A5X6 159 aa15.82■□□□□ 0.12
SHMT1-206ENST00000579558 ATRAIDQ6UW56 229 aa15.82■□□□□ 0.12
SHMT1-206ENST00000579558 Q8N976 141 aa15.82■□□□□ 0.12
SHMT1-206ENST00000579558 BAALCQ8WXS3 180 aa15.82■□□□□ 0.12
SHMT1-206ENST00000579558 TRAV26-2A0A0B4J265 109 aa15.8■□□□□ 0.12
SHMT1-206ENST00000579558 ENHOQ6UWT2 76 aa15.8■□□□□ 0.12
SHMT1-206ENST00000579558 GATD1Q8NB37 220 aa15.8■□□□□ 0.12
SHMT1-206ENST00000579558 BORCS7Q96B45 105 aa15.8■□□□□ 0.12
SHMT1-206ENST00000579558 OSTCQ9NRP0 149 aa15.8■□□□□ 0.12
SHMT1-206ENST00000579558 FOXA3P55318 350 aaPredicted RBP15.79■□□□□ 0.12
SHMT1-206ENST00000579558 RBX1P62877 108 aa15.79■□□□□ 0.12
SHMT1-206ENST00000579558 FAM74A3Q4VXF1 159 aa15.79■□□□□ 0.12
SHMT1-206ENST00000579558 Q8N1X5 172 aa15.79■□□□□ 0.12
SHMT1-206ENST00000579558 TSKUQ8WUA8 353 aa15.79■□□□□ 0.12
SHMT1-206ENST00000579558 C1orf43Q9BWL3 253 aa15.79■□□□□ 0.12
SHMT1-206ENST00000579558 TMEM241Q24JQ0 296 aa15.78■□□□□ 0.12
SHMT1-206ENST00000579558 FRZBQ92765 325 aa15.78■□□□□ 0.12
SHMT1-206ENST00000579558 HIGD1CA8MV81 97 aa15.77■□□□□ 0.12
SHMT1-206ENST00000579558 C9JQL5 133 aa15.77■□□□□ 0.12
SHMT1-206ENST00000579558 XGP55808 180 aa15.77■□□□□ 0.12
SHMT1-206ENST00000579558 PEA15Q15121 130 aa15.77■□□□□ 0.12
SHMT1-206ENST00000579558 DEFB104AQ8WTQ1 72 aa15.77■□□□□ 0.12
SHMT1-206ENST00000579558 TMEM243Q9BU79 118 aa15.77■□□□□ 0.12
SHMT1-206ENST00000579558 GFRA4Q9GZZ7 299 aa15.77■□□□□ 0.12
SHMT1-206ENST00000579558 IGLV2-33A0A075B6J2 118 aaPredicted RBP15.76■□□□□ 0.11
SHMT1-206ENST00000579558 COTL1Q14019 142 aa15.76■□□□□ 0.11
SHMT1-206ENST00000579558 SRSF3P84103 164 aaKnown RBP15.75■□□□□ 0.11
SHMT1-206ENST00000579558 ISOC2Q96AB3 205 aa15.75■□□□□ 0.11
SHMT1-206ENST00000579558 RPL39LQ96EH5 51 aaKnown RBP15.75■□□□□ 0.11
SHMT1-206ENST00000579558 A0A1B0GUT8 65 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 125.1 ms