RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 FAM74A4Q5TZK3 123 aa7.32□□□□□ -1.24
SS18-210ENST00000578700 FAM19A2Q8N3H0 131 aa7.32□□□□□ -1.24
SS18-210ENST00000578700 C20orf78Q9BR46 151 aa7.32□□□□□ -1.24
SS18-210ENST00000578700 HSPB8Q9UJY1 196 aa7.32□□□□□ -1.24
SS18-210ENST00000578700 A0A087WWL8 130 aa7.31□□□□□ -1.24
SS18-210ENST00000578700 TRAV26-2A0A0B4J265 109 aa7.31□□□□□ -1.24
SS18-210ENST00000578700 SPRY2O43597 315 aa7.31□□□□□ -1.24
SS18-210ENST00000578700 LEPROTL1O95214 131 aa7.31□□□□□ -1.24
SS18-210ENST00000578700 APOC4P55056 127 aa7.31□□□□□ -1.24
SS18-210ENST00000578700 KRTDAPP60985 99 aa7.31□□□□□ -1.24
SS18-210ENST00000578700 JOSD1Q15040 202 aaPredicted RBP7.31□□□□□ -1.24
SS18-210ENST00000578700 RRN3P1Q2M238 152 aa7.31□□□□□ -1.24
SS18-210ENST00000578700 C1orf158Q8N1D5 194 aa7.31□□□□□ -1.24
SS18-210ENST00000578700 TMEM263Q8WUH6 116 aaKnown RBP7.31□□□□□ -1.24
SS18-210ENST00000578700 PHLDA1Q8WV24 401 aaPredicted RBP7.31□□□□□ -1.24
SS18-210ENST00000578700 C16orf74Q96GX8 76 aa7.31□□□□□ -1.24
SS18-210ENST00000578700 IGHV1-24A0A0C4DH33 117 aa7.3□□□□□ -1.24
SS18-210ENST00000578700 C20orf202A1L168 122 aa7.3□□□□□ -1.24
SS18-210ENST00000578700 K7EMI3 77 aa7.3□□□□□ -1.24
SS18-210ENST00000578700 RHODO00212 210 aa7.3□□□□□ -1.24
SS18-210ENST00000578700 G0S2P27469 103 aa7.3□□□□□ -1.24
SS18-210ENST00000578700 DEFB135Q30KP9 77 aa7.3□□□□□ -1.24
SS18-210ENST00000578700 PYY3Q5JQD4 70 aa7.3□□□□□ -1.24
SS18-210ENST00000578700 POM121L12Q8N7R1 296 aa7.3□□□□□ -1.24
SS18-210ENST00000578700 Q8N8P6 123 aa7.3□□□□□ -1.24
SS18-210ENST00000578700 ST20Q9HBF5 79 aa7.3□□□□□ -1.24
SS18-210ENST00000578700 NIT2Q9NQR4 276 aa7.3□□□□□ -1.24
SS18-210ENST00000578700 KIR2DL5BA0A0G2JN68 375 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 KIR2DL5BA0A0G2JPC4 375 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 PRSS47A8MTI9 375 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 HBDP02042 147 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 BTF3P20290 206 aaKnown RBP7.29□□□□□ -1.24
SS18-210ENST00000578700 SUMO2P61956 95 aaKnown RBP7.29□□□□□ -1.24
SS18-210ENST00000578700 LGALS9CQ6DKI2 356 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 Q6ZWC4 215 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 KIR2DL5AQ8N109 375 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 NRACQ8N912 160 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 KIR2DL5BQ8NHK3 375 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 URB1-AS1Q96HZ7 61 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 MAP1LC3CQ9BXW4 147 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 KIF25-AS1Q9Y6Z4 181 aa7.29□□□□□ -1.24
SS18-210ENST00000578700 DYNC1H1Q14204 4646 aaKnown RBP7.29□□□□□ -1.24
SS18-210ENST00000578700 MUC4Q99102 2169 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 TCAPO15273 167 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 AZU1P20160 251 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 LAGE3Q14657 143 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 PMCHL1Q16048 86 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 LGALS9BQ3B8N2 356 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 ORMDL2Q53FV1 153 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 SUMO4Q6EEV6 95 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 C11orf72Q8NBR9 251 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 RASL10AQ92737 203 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 TMEM70Q9BUB7 260 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 SMIM2Q9BVW6 85 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 JPT2Q9H910 190 aa7.28□□□□□ -1.24
SS18-210ENST00000578700 PKD1P98161 4303 aa7.27□□□□□ -1.25
SS18-210ENST00000578700 TRGV1A0A0A0MS02 117 aa7.27□□□□□ -1.25
SS18-210ENST00000578700 SMIM9A6NGZ8 99 aa7.27□□□□□ -1.25
SS18-210ENST00000578700 LINC01549A6NIU2 74 aa7.27□□□□□ -1.25
SS18-210ENST00000578700 VCYO14598 125 aa7.27□□□□□ -1.25
SS18-210ENST00000578700 CIDEAO60543 219 aa7.27□□□□□ -1.25
SS18-210ENST00000578700 CRYGDP07320 174 aa7.27□□□□□ -1.25
SS18-210ENST00000578700 GATA1P15976 413 aaPredicted RBP7.27□□□□□ -1.25
SS18-210ENST00000578700 FCER1GP30273 86 aa7.27□□□□□ -1.25
SS18-210ENST00000578700 RPL32P62910 135 aaKnown RBP7.27□□□□□ -1.25
SS18-210ENST00000578700 ZFP2Q6ZN57 461 aa7.27□□□□□ -1.25
SS18-210ENST00000578700 ZNF705AQ6ZN79 300 aaPredicted RBP7.27□□□□□ -1.25
SS18-210ENST00000578700 OR4C5Q8NGB2 326 aa7.27□□□□□ -1.25
SS18-210ENST00000578700 RNASE8Q8TDE3 154 aaKnown RBP7.27□□□□□ -1.25
SS18-210ENST00000578700 KIR2DL4Q99706 377 aa7.27□□□□□ -1.25
SS18-210ENST00000578700 MRPL16Q9NX20 251 aaKnown RBP7.27□□□□□ -1.25
SS18-210ENST00000578700 LINC01546A6NGU7 62 aa7.26□□□□□ -1.25
SS18-210ENST00000578700 GAS8-AS1O95177 125 aa7.26□□□□□ -1.25
SS18-210ENST00000578700 NUDT3O95989 172 aa7.26□□□□□ -1.25
SS18-210ENST00000578700 GIG44P09565 113 aaPredicted RBP7.26□□□□□ -1.25
SS18-210ENST00000578700 C3orf79P0CE67 100 aa7.26□□□□□ -1.25
SS18-210ENST00000578700 LINC00315P59091 139 aa7.26□□□□□ -1.25
SS18-210ENST00000578700 NANOS2P60321 138 aaKnown RBP7.26□□□□□ -1.25
SS18-210ENST00000578700 DAZ2Q13117 558 aaKnown RBP7.26□□□□□ -1.25
SS18-210ENST00000578700 CFAP126Q5VTH2 177 aa7.26□□□□□ -1.25
SS18-210ENST00000578700 CSNK1G2-AS1Q8NCQ2 148 aa7.26□□□□□ -1.25
SS18-210ENST00000578700 RPL39LQ96EH5 51 aaKnown RBP7.26□□□□□ -1.25
SS18-210ENST00000578700 TP53TG1Q9Y2A0 90 aa7.26□□□□□ -1.25
SS18-210ENST00000578700 DNAH11Q96DT5 4516 aa7.26□□□□□ -1.25
SS18-210ENST00000578700 ABCA13Q86UQ4 5058 aa7.25□□□□□ -1.25
SS18-210ENST00000578700 TRGV2A0A075B6R0 118 aa7.25□□□□□ -1.25
SS18-210ENST00000578700 TRBV6-5A0A0K0K1A5 114 aa7.25□□□□□ -1.25
SS18-210ENST00000578700 M0QY20 66 aa7.25□□□□□ -1.25
SS18-210ENST00000578700 RS1O15537 224 aa7.25□□□□□ -1.25
SS18-210ENST00000578700 PET117Q6UWS5 81 aa7.25□□□□□ -1.25
SS18-210ENST00000578700 RNF183Q96D59 192 aa7.25□□□□□ -1.25
SS18-210ENST00000578700 NOP10Q9NPE3 64 aaKnown RBP7.25□□□□□ -1.25
SS18-210ENST00000578700 TNFRSF18Q9Y5U5 241 aa7.25□□□□□ -1.25
SS18-210ENST00000578700 IGHV3-73A0A0B4J1V6 119 aa7.24□□□□□ -1.25
SS18-210ENST00000578700 SDHAF1A6NFY7 115 aa7.24□□□□□ -1.25
SS18-210ENST00000578700 TSTD3H0UI37 97 aa7.24□□□□□ -1.25
SS18-210ENST00000578700 SYS1-DBNDD2H3BUS1 97 aa7.24□□□□□ -1.25
SS18-210ENST00000578700 ATP5LO75964 103 aa7.24□□□□□ -1.25
SS18-210ENST00000578700 PRM2P04554 102 aa7.24□□□□□ -1.25
SS18-210ENST00000578700 DNAJC30Q96LL9 226 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms