RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CIRBP-AS1Q8TBR5 109 aa13.75□□□□□ -0.21
VPS53-216ENST00000574029 PHLDA3Q9Y5J5 127 aa13.75□□□□□ -0.21
VPS53-216ENST00000574029 LINC01559Q495D7 138 aa13.74□□□□□ -0.21
VPS53-216ENST00000574029 DERL1Q9BUN8 251 aa13.74□□□□□ -0.21
VPS53-216ENST00000574029 M0R381 172 aa13.73□□□□□ -0.21
VPS53-216ENST00000574029 UBE2D3P61077 147 aa13.73□□□□□ -0.21
VPS53-216ENST00000574029 UBE2D2P62837 147 aa13.73□□□□□ -0.21
VPS53-216ENST00000574029 RPL36AP83881 106 aaKnown RBP13.73□□□□□ -0.21
VPS53-216ENST00000574029 RPL36ALQ969Q0 106 aaKnown RBP13.73□□□□□ -0.21
VPS53-216ENST00000574029 TRBV7-3A0A075B6L6 115 aa13.72□□□□□ -0.21
VPS53-216ENST00000574029 Q0VG73 95 aa13.72□□□□□ -0.21
VPS53-216ENST00000574029 SERTAD4-AS1Q5TG53 156 aa13.72□□□□□ -0.21
VPS53-216ENST00000574029 KCNIP4Q6PIL6 250 aa13.72□□□□□ -0.21
VPS53-216ENST00000574029 ZFP82Q8N141 532 aa13.72□□□□□ -0.21
VPS53-216ENST00000574029 MED9Q9NWA0 146 aa13.72□□□□□ -0.21
VPS53-216ENST00000574029 SMIM12Q96EX1 92 aa13.71□□□□□ -0.21
VPS53-216ENST00000574029 TMSB15BA0A087X1C1 80 aa13.7□□□□□ -0.22
VPS53-216ENST00000574029 OXTP01178 125 aa13.7□□□□□ -0.22
VPS53-216ENST00000574029 IGLV2-8P01709 118 aa13.7□□□□□ -0.22
VPS53-216ENST00000574029 TEX261Q6UWH6 196 aa13.7□□□□□ -0.22
VPS53-216ENST00000574029 OR10G8Q8NGN5 311 aa13.7□□□□□ -0.22
VPS53-216ENST00000574029 RAB19A4D1S5 217 aa13.69□□□□□ -0.22
VPS53-216ENST00000574029 C14orf177Q52M58 125 aa13.69□□□□□ -0.22
VPS53-216ENST00000574029 CENPWQ5EE01 88 aa13.69□□□□□ -0.22
VPS53-216ENST00000574029 ENHOQ6UWT2 76 aa13.69□□□□□ -0.22
VPS53-216ENST00000574029 TRBV6-8A0A0A6YYG3 113 aa13.68□□□□□ -0.22
VPS53-216ENST00000574029 NDUFS6O75380 124 aaKnown RBP13.68□□□□□ -0.22
VPS53-216ENST00000574029 CXCL1P09341 107 aa13.68□□□□□ -0.22
VPS53-216ENST00000574029 C1orf43Q9BWL3 253 aa13.68□□□□□ -0.22
VPS53-216ENST00000574029 LRP1Q07954 4544 aaKnown RBP13.67□□□□□ -0.22
VPS53-216ENST00000574029 TRBV20OR9-2A0A075B6H5 130 aa13.67□□□□□ -0.22
VPS53-216ENST00000574029 TMEM262E9PQX1 116 aa13.67□□□□□ -0.22
VPS53-216ENST00000574029 TMEM250H0YL14 139 aa13.67□□□□□ -0.22
VPS53-216ENST00000574029 GNG4P50150 75 aa13.67□□□□□ -0.22
VPS53-216ENST00000574029 RAB4BP61018 213 aa13.67□□□□□ -0.22
VPS53-216ENST00000574029 CRPP02741 224 aa13.65□□□□□ -0.22
VPS53-216ENST00000574029 MPV17L2Q567V2 206 aa13.65□□□□□ -0.22
VPS53-216ENST00000574029 PRR27Q6MZM9 219 aa13.65□□□□□ -0.22
VPS53-216ENST00000574029 C15orf54Q8N8G6 183 aa13.65□□□□□ -0.22
VPS53-216ENST00000574029 NEXN-AS1Q8NBZ9 246 aa13.65□□□□□ -0.22
VPS53-216ENST00000574029 FAM210AQ96ND0 272 aa13.65□□□□□ -0.22
VPS53-216ENST00000574029 C19orf71A6NCJ1 209 aa13.64□□□□□ -0.23
VPS53-216ENST00000574029 BIN3Q9NQY0 253 aa13.64□□□□□ -0.23
VPS53-216ENST00000574029 RPL19P84098 196 aaKnown RBP13.63□□□□□ -0.23
VPS53-216ENST00000574029 SSBP4Q9BWG4 385 aaPredicted RBP13.63□□□□□ -0.23
VPS53-216ENST00000574029 USP17L23D6RBM5 183 aa13.62□□□□□ -0.23
VPS53-216ENST00000574029 ANGP03950 147 aaKnown RBP13.62□□□□□ -0.23
VPS53-216ENST00000574029 ZNF56Q15929 161 aa13.62□□□□□ -0.23
VPS53-216ENST00000574029 OR10AG1Q8NH19 301 aa13.62□□□□□ -0.23
VPS53-216ENST00000574029 DAZAP1Q96EP5 407 aaKnown RBP13.62□□□□□ -0.23
VPS53-216ENST00000574029 EIF5A2Q9GZV4 153 aaKnown RBP13.62□□□□□ -0.23
VPS53-216ENST00000574029 SNAI2O43623 268 aa13.61□□□□□ -0.23
VPS53-216ENST00000574029 PKIAP61925 76 aa13.61□□□□□ -0.23
VPS53-216ENST00000574029 MIAQ16674 131 aa13.61□□□□□ -0.23
VPS53-216ENST00000574029 FAT3Q8TDW7 4589 aa13.6□□□□□ -0.23
VPS53-216ENST00000574029 HLA-DQA1P01909 254 aa13.6□□□□□ -0.23
VPS53-216ENST00000574029 PRSS1P07477 247 aa13.6□□□□□ -0.23
VPS53-216ENST00000574029 OR5AL1P0C617 328 aa13.6□□□□□ -0.23
VPS53-216ENST00000574029 RPS20P60866 119 aaKnown RBP13.6□□□□□ -0.23
VPS53-216ENST00000574029 RPL37AP61513 92 aaKnown RBP13.6□□□□□ -0.23
VPS53-216ENST00000574029 DGAT2L7PQ6IED9 249 aa13.6□□□□□ -0.23
VPS53-216ENST00000574029 OCC1Q8TAD7 63 aa13.6□□□□□ -0.23
VPS53-216ENST00000574029 CHCHD5Q9BSY4 110 aa13.6□□□□□ -0.23
VPS53-216ENST00000574029 NTM-AS1Q6ZSK4 140 aa13.59□□□□□ -0.23
VPS53-216ENST00000574029 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.59□□□□□ -0.23
VPS53-216ENST00000574029 PRR34Q9NV39 138 aa13.59□□□□□ -0.23
VPS53-216ENST00000574029 SRP19P09132 144 aaKnown RBP13.58□□□□□ -0.24
VPS53-216ENST00000574029 TMEM97Q5BJF2 176 aa13.58□□□□□ -0.24
VPS53-216ENST00000574029 C9orf163Q8N9P6 203 aa13.58□□□□□ -0.24
VPS53-216ENST00000574029 HMCN2Q8NDA2 5059 aa13.57□□□□□ -0.24
VPS53-216ENST00000574029 K7EN84 100 aa13.57□□□□□ -0.24
VPS53-216ENST00000574029 P01737 135 aa13.57□□□□□ -0.24
VPS53-216ENST00000574029 HNRNPA3P51991 378 aaKnown RBP13.57□□□□□ -0.24
VPS53-216ENST00000574029 KRTAP26-1Q6PEX3 210 aa13.57□□□□□ -0.24
VPS53-216ENST00000574029 OR2D3Q8NGH3 330 aa13.57□□□□□ -0.24
VPS53-216ENST00000574029 IGLC6P0CF74 106 aa13.56□□□□□ -0.24
VPS53-216ENST00000574029 NUDT10Q8NFP7 164 aa13.56□□□□□ -0.24
VPS53-216ENST00000574029 NUDT11Q96G61 164 aa13.56□□□□□ -0.24
VPS53-216ENST00000574029 PLA2G2DQ9UNK4 145 aa13.56□□□□□ -0.24
VPS53-216ENST00000574029 KIF25-AS1Q9Y6Z4 181 aa13.56□□□□□ -0.24
VPS53-216ENST00000574029 MUC21A0A0G2JKD1 596 aa13.55□□□□□ -0.24
VPS53-216ENST00000574029 MUC21A0A140T8X8 626 aa13.55□□□□□ -0.24
VPS53-216ENST00000574029 XKRY2A2RUG3 117 aa13.55□□□□□ -0.24
VPS53-216ENST00000574029 F5H697 171 aa13.55□□□□□ -0.24
VPS53-216ENST00000574029 RBX1P62877 108 aa13.55□□□□□ -0.24
VPS53-216ENST00000574029 SPANXN1Q5VSR9 72 aa13.55□□□□□ -0.24
VPS53-216ENST00000574029 SMDT1Q9H4I9 107 aa13.55□□□□□ -0.24
VPS53-216ENST00000574029 PKHD1L1Q86WI1 4243 aa13.55□□□□□ -0.24
VPS53-216ENST00000574029 LINC00269Q8N2A0 174 aa13.54□□□□□ -0.24
VPS53-216ENST00000574029 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.54□□□□□ -0.24
VPS53-216ENST00000574029 GZMBP10144 247 aa13.53□□□□□ -0.24
VPS53-216ENST00000574029 CEBPGP53567 150 aa13.53□□□□□ -0.24
VPS53-216ENST00000574029 GAGE6Q13070 117 aa13.53□□□□□ -0.24
VPS53-216ENST00000574029 CLPSL2Q6UWE3 100 aa13.53□□□□□ -0.24
VPS53-216ENST00000574029 FAM231DQ6ZW35 169 aa13.53□□□□□ -0.24
VPS53-216ENST00000574029 SMIM7Q9BQ49 75 aa13.53□□□□□ -0.24
VPS53-216ENST00000574029 TRBV25-1A0A075B6N4 114 aa13.52□□□□□ -0.25
VPS53-216ENST00000574029 F2Z2F3 143 aa13.52□□□□□ -0.25
VPS53-216ENST00000574029 PANO1I0J062 215 aa13.52□□□□□ -0.25
VPS53-216ENST00000574029 PEA15Q15121 130 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms