RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 DAD1P61803 113 aa9.71□□□□□ -0.86
CCDC40-209ENST00000573474 SUMO2P61956 95 aaKnown RBP9.71□□□□□ -0.86
CCDC40-209ENST00000573474 FA2HQ7L5A8 372 aa9.71□□□□□ -0.86
CCDC40-209ENST00000573474 CHCHD1Q96BP2 118 aaKnown RBP9.71□□□□□ -0.86
CCDC40-209ENST00000573474 ZMAT4Q9H898 229 aa9.71□□□□□ -0.86
CCDC40-209ENST00000573474 NXT2Q9NPJ8 142 aaKnown RBP9.71□□□□□ -0.86
CCDC40-209ENST00000573474 CELA1Q9UNI1 258 aa9.71□□□□□ -0.86
CCDC40-209ENST00000573474 TRGV4A0A0C4DH28 118 aa9.7□□□□□ -0.86
CCDC40-209ENST00000573474 NUPR1O60356 82 aa9.7□□□□□ -0.86
CCDC40-209ENST00000573474 PMCHP20382 165 aa9.7□□□□□ -0.86
CCDC40-209ENST00000573474 LINC00310P59036 64 aa9.7□□□□□ -0.86
CCDC40-209ENST00000573474 RPL32P62910 135 aaKnown RBP9.7□□□□□ -0.86
CCDC40-209ENST00000573474 FHL2Q14192 279 aa9.7□□□□□ -0.86
CCDC40-209ENST00000573474 RNASEKQ6P5S7 137 aaKnown RBP9.7□□□□□ -0.86
CCDC40-209ENST00000573474 Q8N8P6 123 aa9.7□□□□□ -0.86
CCDC40-209ENST00000573474 URB1-AS1Q96HZ7 61 aa9.7□□□□□ -0.86
CCDC40-209ENST00000573474 B9D2Q9BPU9 175 aa9.7□□□□□ -0.86
CCDC40-209ENST00000573474 HIST3H2BBQ8N257 126 aa9.69□□□□□ -0.86
CCDC40-209ENST00000573474 DNAJC30Q96LL9 226 aa9.69□□□□□ -0.86
CCDC40-209ENST00000573474 SMIM2Q9BVW6 85 aa9.69□□□□□ -0.86
CCDC40-209ENST00000573474 TNFRSF18Q9Y5U5 241 aa9.69□□□□□ -0.86
CCDC40-209ENST00000573474 NACAE9PAV3 2078 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 IGLV2-18A0A075B6J9 118 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 TRBV10-1A0A0K0K1A3 114 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 TRBV6-4A0A1B0GX49 114 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 LINC01546A6NGU7 62 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 K7EQD1 137 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 VCYO14598 125 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 P0DMU3 169 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 FAM231AP0DMU4 169 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 FAM231CP0DMU5 169 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 S100A2P29034 98 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 POLR2KP53803 58 aaKnown RBP9.68□□□□□ -0.86
CCDC40-209ENST00000573474 SLC25A29Q8N8R3 303 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 NEXN-AS1Q8NBZ9 246 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 AP5S1Q9NUS5 200 aa9.68□□□□□ -0.86
CCDC40-209ENST00000573474 A0A0J9YWU9 116 aa9.67□□□□□ -0.86
CCDC40-209ENST00000573474 SDHAF1A6NFY7 115 aa9.67□□□□□ -0.86
CCDC40-209ENST00000573474 HSBP1O75506 76 aa9.67□□□□□ -0.86
CCDC40-209ENST00000573474 ATP5G1P05496 136 aa9.67□□□□□ -0.86
CCDC40-209ENST00000573474 PDZD11Q5EBL8 140 aa9.67□□□□□ -0.86
CCDC40-209ENST00000573474 TMEM70Q9BUB7 260 aa9.67□□□□□ -0.86
CCDC40-209ENST00000573474 HHLA3Q9XRX5 114 aa9.67□□□□□ -0.86
CCDC40-209ENST00000573474 RHOHQ15669 191 aa9.66□□□□□ -0.86
CCDC40-209ENST00000573474 C12orf74Q32Q52 190 aa9.66□□□□□ -0.86
CCDC40-209ENST00000573474 PRADC1Q9BSG0 188 aa9.66□□□□□ -0.86
CCDC40-209ENST00000573474 TRBV27A0A0K0K1C4 114 aa9.65□□□□□ -0.86
CCDC40-209ENST00000573474 K7EMI3 77 aa9.65□□□□□ -0.86
CCDC40-209ENST00000573474 RPL36AP83881 106 aaKnown RBP9.65□□□□□ -0.86
CCDC40-209ENST00000573474 DEFA6Q01524 100 aa9.65□□□□□ -0.86
CCDC40-209ENST00000573474 RPL36ALQ969Q0 106 aaKnown RBP9.65□□□□□ -0.86
CCDC40-209ENST00000573474 TMEM18Q96B42 140 aa9.65□□□□□ -0.86
CCDC40-209ENST00000573474 Q9UF83 564 aa9.65□□□□□ -0.86
CCDC40-209ENST00000573474 PRO0255Q9UI72 69 aa9.65□□□□□ -0.86
CCDC40-209ENST00000573474 TRBV7-3A0A075B6L6 115 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 LOC105371267A0A1B0GV96 52 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 IFITM10A6NMD0 228 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 I3L3M4 83 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 TCAPO15273 167 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 NHLRC4P0CG21 123 aaPredicted RBP9.64□□□□□ -0.87
CCDC40-209ENST00000573474 AMTP48728 403 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 LAGE3Q14657 143 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 FAM19A2Q8N3H0 131 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 ZNRF2Q8NHG8 242 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 C11orf45Q8TAV5 145 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 PACRGQ96M98 296 aaPredicted RBP9.64□□□□□ -0.87
CCDC40-209ENST00000573474 KIR2DL4Q99706 377 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 HIST1H2BLQ99880 126 aa9.64□□□□□ -0.87
CCDC40-209ENST00000573474 IGHV1-24A0A0C4DH33 117 aa9.63□□□□□ -0.87
CCDC40-209ENST00000573474 F5H768 121 aa9.63□□□□□ -0.87
CCDC40-209ENST00000573474 FABP4P15090 132 aa9.63□□□□□ -0.87
CCDC40-209ENST00000573474 CRYBA4P53673 196 aa9.63□□□□□ -0.87
CCDC40-209ENST00000573474 ORMDL2Q53FV1 153 aa9.63□□□□□ -0.87
CCDC40-209ENST00000573474 NEGR1Q7Z3B1 354 aa9.63□□□□□ -0.87
CCDC40-209ENST00000573474 GAGE12JA6NER3 117 aa9.62□□□□□ -0.87
CCDC40-209ENST00000573474 PAX4O43316 350 aa9.62□□□□□ -0.87
CCDC40-209ENST00000573474 FCER1GP30273 86 aa9.62□□□□□ -0.87
CCDC40-209ENST00000573474 GAGE1Q13065 139 aa9.62□□□□□ -0.87
CCDC40-209ENST00000573474 GAGE4Q13068 117 aa9.62□□□□□ -0.87
CCDC40-209ENST00000573474 GAGE5Q13069 117 aa9.62□□□□□ -0.87
CCDC40-209ENST00000573474 PMCHL1Q16048 86 aa9.62□□□□□ -0.87
CCDC40-209ENST00000573474 GAGE13Q4V321 117 aa9.62□□□□□ -0.87
CCDC40-209ENST00000573474 HUWE1Q7Z6Z7 4374 aaKnown RBP9.61□□□□□ -0.87
CCDC40-209ENST00000573474 LOC100131303A0A0U1RQF7 123 aa9.61□□□□□ -0.87
CCDC40-209ENST00000573474 HTN3P15516 51 aa9.61□□□□□ -0.87
CCDC40-209ENST00000573474 UBE2D3P61077 147 aa9.61□□□□□ -0.87
CCDC40-209ENST00000573474 UBE2D2P62837 147 aa9.61□□□□□ -0.87
CCDC40-209ENST00000573474 DAZ4Q86SG3 579 aaKnown RBP9.61□□□□□ -0.87
CCDC40-209ENST00000573474 DAZ3Q9NR90 486 aaKnown RBP9.61□□□□□ -0.87
CCDC40-209ENST00000573474 TENM3Q9P273 2699 aa9.6□□□□□ -0.87
CCDC40-209ENST00000573474 DNAH9Q9NYC9 4486 aa9.6□□□□□ -0.87
CCDC40-209ENST00000573474 NUDT3O95989 172 aa9.6□□□□□ -0.87
CCDC40-209ENST00000573474 TSHBP01222 138 aa9.6□□□□□ -0.87
CCDC40-209ENST00000573474 HBDP02042 147 aa9.6□□□□□ -0.87
CCDC40-209ENST00000573474 GYPEP15421 78 aa9.6□□□□□ -0.87
CCDC40-209ENST00000573474 G0S2P27469 103 aa9.6□□□□□ -0.87
CCDC40-209ENST00000573474 NANOS2P60321 138 aaKnown RBP9.6□□□□□ -0.87
CCDC40-209ENST00000573474 Q6ZTC4 211 aa9.6□□□□□ -0.87
CCDC40-209ENST00000573474 PHLDA1Q8WV24 401 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-209ENST00000573474 A0A096LNJ9 63 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms