RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 TMEM219Q86XT9 240 aa12.22□□□□□ -0.45
LINC00554-201ENST00000564841 C20orf173Q96LM9 149 aa12.22□□□□□ -0.45
LINC00554-201ENST00000564841 DPH3P1Q9H4G8 78 aa12.22□□□□□ -0.45
LINC00554-201ENST00000564841 TRIAP1O43715 76 aa12.22□□□□□ -0.45
LINC00554-201ENST00000564841 ZFAND3Q9H8U3 227 aa12.22□□□□□ -0.45
LINC00554-201ENST00000564841 VPREB3Q9UKI3 123 aa12.22□□□□□ -0.45
LINC00554-201ENST00000564841 PMVKQ15126 192 aa12.21□□□□□ -0.45
LINC00554-201ENST00000564841 A0A087WWL8 130 aa12.21□□□□□ -0.45
LINC00554-201ENST00000564841 ZNF22P17026 224 aaPredicted RBP12.21□□□□□ -0.45
LINC00554-201ENST00000564841 FBN2P35556 2912 aa12.21□□□□□ -0.45
LINC00554-201ENST00000564841 SORL1Q92673 2214 aa12.21□□□□□ -0.46
LINC00554-201ENST00000564841 F6UB75 175 aa12.21□□□□□ -0.46
LINC00554-201ENST00000564841 BRD3OSQ6XYD6 125 aa12.21□□□□□ -0.46
LINC00554-201ENST00000564841 CLEC2BQ92478 149 aa12.21□□□□□ -0.46
LINC00554-201ENST00000564841 CCL19Q99731 98 aa12.21□□□□□ -0.46
LINC00554-201ENST00000564841 H3BMM0 161 aa12.2□□□□□ -0.46
LINC00554-201ENST00000564841 C2orf82Q6UX34 121 aa12.2□□□□□ -0.46
LINC00554-201ENST00000564841 UBE2WQ96B02 151 aa12.2□□□□□ -0.46
LINC00554-201ENST00000564841 ATP5J2P56134 94 aa12.2□□□□□ -0.46
LINC00554-201ENST00000564841 CEMP1Q6PRD7 247 aaPredicted RBP12.2□□□□□ -0.46
LINC00554-201ENST00000564841 IGHV7-81A0A0B4J1V7 117 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 RBAKDNA6NC62 111 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 M0QXV9 152 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 LGALS9O00182 355 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 ATXN8Q156A1 80 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 OR10J6PQ8NGY7 276 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 RNF5Q99942 180 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 PRSS2P07478 247 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 ZNF256Q9Y2P7 627 aaPredicted RBP12.19□□□□□ -0.46
LINC00554-201ENST00000564841 LOC107984640A0A0U1RRK4 108 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 RNASE4P34096 147 aaKnown RBP12.19□□□□□ -0.46
LINC00554-201ENST00000564841 MAPK1IP1LQ8NDC0 245 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 NPBQ8NG41 125 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 C16orf92Q96LL3 132 aa12.19□□□□□ -0.46
LINC00554-201ENST00000564841 MYO9AB2RTY4 2548 aa12.18□□□□□ -0.46
LINC00554-201ENST00000564841 H7C423 109 aa12.18□□□□□ -0.46
LINC00554-201ENST00000564841 M0R1W7 72 aa12.18□□□□□ -0.46
LINC00554-201ENST00000564841 SAA4P35542 130 aa12.18□□□□□ -0.46
LINC00554-201ENST00000564841 LMO4P61968 165 aa12.18□□□□□ -0.46
LINC00554-201ENST00000564841 ATP6V0E1O15342 81 aa12.18□□□□□ -0.46
LINC00554-201ENST00000564841 LINC01587Q99440 93 aa12.18□□□□□ -0.46
LINC00554-201ENST00000564841 IGHV4-61A0A0C4DH41 118 aa12.17□□□□□ -0.46
LINC00554-201ENST00000564841 F5H697 171 aa12.17□□□□□ -0.46
LINC00554-201ENST00000564841 Q6Q795 121 aa12.17□□□□□ -0.46
LINC00554-201ENST00000564841 TRBV10-2A0A0K0K1G8 114 aa12.17□□□□□ -0.46
LINC00554-201ENST00000564841 UBE2E1P51965 193 aa12.17□□□□□ -0.46
LINC00554-201ENST00000564841 C9orf47Q6ZRZ4 202 aa12.17□□□□□ -0.46
LINC00554-201ENST00000564841 MDFICQ9P1T7 246 aa12.17□□□□□ -0.46
LINC00554-201ENST00000564841 KLK5Q9Y337 293 aaPredicted RBP12.17□□□□□ -0.46
LINC00554-201ENST00000564841 ZFAND2AQ8N6M9 145 aa12.16□□□□□ -0.46
LINC00554-201ENST00000564841 LINC00694P0DN24 101 aa12.16□□□□□ -0.46
LINC00554-201ENST00000564841 RNASE3P12724 160 aaKnown RBP12.16□□□□□ -0.46
LINC00554-201ENST00000564841 CCDC140Q96MF4 163 aa12.16□□□□□ -0.46
LINC00554-201ENST00000564841 TEX15Q9BXT5 2789 aa12.15□□□□□ -0.46
LINC00554-201ENST00000564841 OOSP1A8MZH6 123 aa12.15□□□□□ -0.46
LINC00554-201ENST00000564841 P0DMU3 169 aa12.15□□□□□ -0.46
LINC00554-201ENST00000564841 FAM231AP0DMU4 169 aa12.15□□□□□ -0.46
LINC00554-201ENST00000564841 FAM231CP0DMU5 169 aa12.15□□□□□ -0.46
LINC00554-201ENST00000564841 ZNF876PQ49A33 203 aa12.15□□□□□ -0.46
LINC00554-201ENST00000564841 FAM74A4Q5TZK3 123 aa12.15□□□□□ -0.46
LINC00554-201ENST00000564841 ODF3BA8MYP8 253 aa12.15□□□□□ -0.46
LINC00554-201ENST00000564841 SIRPDQ9H106 197 aa12.15□□□□□ -0.46
LINC00554-201ENST00000564841 YAE1D1Q9NRH1 226 aa12.15□□□□□ -0.46
LINC00554-201ENST00000564841 TRGV11A0A075B6L2 103 aa12.14□□□□□ -0.47
LINC00554-201ENST00000564841 A8MZ25 164 aa12.14□□□□□ -0.47
LINC00554-201ENST00000564841 RPL13AP40429 203 aaKnown RBP12.14□□□□□ -0.47
LINC00554-201ENST00000564841 MRPL23Q16540 153 aaKnown RBP12.14□□□□□ -0.47
LINC00554-201ENST00000564841 Q8N9W7 124 aa12.14□□□□□ -0.47
LINC00554-201ENST00000564841 EEF1AKMT3Q96AZ1 226 aa12.14□□□□□ -0.47
LINC00554-201ENST00000564841 IGHV4-30-2A0A087WSY4 118 aa12.14□□□□□ -0.47
LINC00554-201ENST00000564841 A0A0J9YXV3 536 aa12.14□□□□□ -0.47
LINC00554-201ENST00000564841 FAM236AA0A1B0GUQ0 79 aa12.14□□□□□ -0.47
LINC00554-201ENST00000564841 FAM236BA0A1B0GV22 79 aa12.14□□□□□ -0.47
LINC00554-201ENST00000564841 LINC00315P59091 139 aa12.14□□□□□ -0.47
LINC00554-201ENST00000564841 SDHAF1A6NFY7 115 aa12.13□□□□□ -0.47
LINC00554-201ENST00000564841 SUMO4Q6EEV6 95 aa12.13□□□□□ -0.47
LINC00554-201ENST00000564841 PRRC2AP48634 2157 aaKnown RBP12.13□□□□□ -0.47
LINC00554-201ENST00000564841 LY6EQ16553 131 aa12.13□□□□□ -0.47
LINC00554-201ENST00000564841 ADAMTSL4-AS1Q5T5F5 129 aa12.13□□□□□ -0.47
LINC00554-201ENST00000564841 SPXQ9BT56 116 aa12.13□□□□□ -0.47
LINC00554-201ENST00000564841 ACANP16112 2415 aa12.13□□□□□ -0.47
LINC00554-201ENST00000564841 A0A0B4J2C4 111 aa12.13□□□□□ -0.47
LINC00554-201ENST00000564841 RPL11P62913 178 aaKnown RBP12.13□□□□□ -0.47
LINC00554-201ENST00000564841 HELZ2Q9BYK8 2649 aaKnown RBP12.12□□□□□ -0.47
LINC00554-201ENST00000564841 TRAV8-3A0A0A6YYJ7 113 aa12.12□□□□□ -0.47
LINC00554-201ENST00000564841 IGHV3-11P01762 117 aa12.12□□□□□ -0.47
LINC00554-201ENST00000564841 POLR2KP53803 58 aaKnown RBP12.12□□□□□ -0.47
LINC00554-201ENST00000564841 PAPPA-AS1Q5QFB9 102 aa12.12□□□□□ -0.47
LINC00554-201ENST00000564841 TMEM223A0PJW6 202 aa12.11□□□□□ -0.47
LINC00554-201ENST00000564841 RNASE13Q5GAN3 156 aaKnown RBP12.11□□□□□ -0.47
LINC00554-201ENST00000564841 A0A0J9YXY3 114 aa12.11□□□□□ -0.47
LINC00554-201ENST00000564841 TRBV12-3P01733 135 aa12.11□□□□□ -0.47
LINC00554-201ENST00000564841 METTL26Q96S19 204 aa12.11□□□□□ -0.47
LINC00554-201ENST00000564841 PIMREGQ9BSJ6 248 aa12.11□□□□□ -0.47
LINC00554-201ENST00000564841 UBR5O95071 2799 aaPredicted RBP12.1□□□□□ -0.47
LINC00554-201ENST00000564841 TRAV21A0A0B4J279 112 aa12.1□□□□□ -0.47
LINC00554-201ENST00000564841 DAND5Q8N907 189 aa12.1□□□□□ -0.47
LINC00554-201ENST00000564841 ICOSQ9Y6W8 199 aa12.1□□□□□ -0.47
LINC00554-201ENST00000564841 KIF25-AS1Q9Y6Z4 181 aa12.1□□□□□ -0.47
LINC00554-201ENST00000564841 MXRA5Q9NR99 2828 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms