RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 TMEM208Q9BTX3 173 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 CNFNQ9BYD5 112 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 TP53TG3Q9ULZ0 132 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 PHLDA3Q9Y5J5 127 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 LOC102724200A0A096LPH7 203 aaPredicted RBP3.7□□□□□ -1.82
LDLR-209ENST00000558528 TRAV12-3A0A0B4J271 114 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 IGKV3D-20A0A0C4DH25 116 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 SMIM9A6NGZ8 99 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 LYRM9A8MSI8 78 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 IGKV3-20P01619 116 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 APCSP02743 223 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 PPBPP02775 128 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 ARMS2P0C7Q2 107 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 IGLC6P0CF74 106 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 SMIM17P0DL12 118 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 CTRLP40313 264 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 TCL1AP56279 114 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 FABP9Q0Z7S8 132 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 SPINK13Q1W4C9 94 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 KRTAP15-1Q3LI76 137 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 GDF5OSQ5U4N7 250 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 GFI1BQ5VTD9 330 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 LYZL1Q6UWQ5 148 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 ZNF493Q6ZR52 646 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 Q6ZRP5 223 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 ZFP82Q8N141 532 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 GATD1Q8NB37 220 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 NTN5Q8WTR8 489 aaPredicted RBP3.7□□□□□ -1.82
LDLR-209ENST00000558528 GTSF1Q8WW33 167 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 PTH2Q96A98 100 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 NAGKQ9UJ70 344 aa3.7□□□□□ -1.82
LDLR-209ENST00000558528 TMSB15BA0A087X1C1 80 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 A0A1B0GUV1 79 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 A0A1B0GXF2 115 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 M0R2Z0 102 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 TRGC2P03986 189 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 CD7P09564 240 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 IGLL1P15814 213 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 NTF3P20783 257 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 RPL32P62910 135 aaKnown RBP3.69□□□□□ -1.82
LDLR-209ENST00000558528 MRPL54Q6P161 138 aaKnown RBP3.69□□□□□ -1.82
LDLR-209ENST00000558528 MAP1LC3CQ9BXW4 147 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 TMEM191AQ9H0A3 160 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 SCRT2Q9NQ03 307 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 LAMTOR2Q9Y2Q5 125 aa3.69□□□□□ -1.82
LDLR-209ENST00000558528 STAB2Q8WWQ8 2551 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 IGLV4-3A0A075B6K6 122 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 TRAV12-2A0A075B6T6 113 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 GRIFINA4D1Z8 144 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 A8MWV9 139 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 M0R2P5 195 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 CRXO43186 299 aaPredicted RBP3.68□□□□□ -1.82
LDLR-209ENST00000558528 SPINK4O60575 86 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 GZMBP10144 247 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 NDUFV3P56181 108 aaKnown RBP3.68□□□□□ -1.82
LDLR-209ENST00000558528 EGFEM1PQ0D2K5 195 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 Q0VG73 95 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 RRN3P1Q2M238 152 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 LGALS9BQ3B8N2 356 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 OR10J3Q5JRS4 329 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 ADAMTSL4-AS1Q5T5F5 129 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 TMEM136Q6ZRR5 245 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 C16orf74Q96GX8 76 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 AP1S3Q96PC3 154 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 DPH3P1Q9H4G8 78 aa3.68□□□□□ -1.82
LDLR-209ENST00000558528 IGHV3-16A0A0C4DH30 117 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 H3BVH4 76 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 H7C1H1 209 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 PHOX2AO14813 284 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 TCAPO15273 167 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 GNRH2O43555 120 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 G0S2P27469 103 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 CKS2P33552 79 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 DEFB1P60022 68 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 PRR9Q5T870 116 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 FAM104BQ5XKR9 115 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 ORMDL3Q8N138 153 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 DEFB125Q8N687 156 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 TMEM263Q8WUH6 116 aaKnown RBP3.67□□□□□ -1.82
LDLR-209ENST00000558528 MRAP2Q96G30 205 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 HIST1H4GQ99525 98 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 XCL2Q9UBD3 114 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 CSMD3Q7Z407 3707 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 UBR4Q5T4S7 5183 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 DNAH7Q8WXX0 4024 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 FRAS1Q86XX4 4008 aa3.67□□□□□ -1.82
LDLR-209ENST00000558528 RBMY1BA6NDE4 496 aaKnown RBP3.66□□□□□ -1.82
LDLR-209ENST00000558528 RBMY1EA6NEQ0 496 aaKnown RBP3.66□□□□□ -1.82
LDLR-209ENST00000558528 LINC01549A6NIU2 74 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 K7EMI3 77 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 M0R381 172 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 RBMY1DP0C7P1 496 aaKnown RBP3.66□□□□□ -1.82
LDLR-209ENST00000558528 PRB4P10163 310 aaPredicted RBP3.66□□□□□ -1.82
LDLR-209ENST00000558528 RNASE3P12724 160 aaKnown RBP3.66□□□□□ -1.82
LDLR-209ENST00000558528 HTN1P15515 57 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 RAB4AP20338 218 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 S100A2P29034 98 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 NDUFA6P56556 154 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 FXYD7P58549 80 aa3.66□□□□□ -1.82
LDLR-209ENST00000558528 DAZ2Q13117 558 aaKnown RBP3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms