RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 HOXA5P20719 270 aa10.21□□□□□ -0.77
SHMT2-210ENST00000553950 ST20Q9HBF5 79 aa10.21□□□□□ -0.77
SHMT2-210ENST00000553950 TRBV7-3A0A075B6L6 115 aa10.2□□□□□ -0.78
SHMT2-210ENST00000553950 TCAPO15273 167 aa10.2□□□□□ -0.78
SHMT2-210ENST00000553950 SRIP30626 198 aa10.2□□□□□ -0.78
SHMT2-210ENST00000553950 C15orf53Q8NAA6 179 aa10.2□□□□□ -0.78
SHMT2-210ENST00000553950 STAB2Q8WWQ8 2551 aa10.2□□□□□ -0.78
SHMT2-210ENST00000553950 ICOSQ9Y6W8 199 aa10.2□□□□□ -0.78
SHMT2-210ENST00000553950 TRAV26-1A0A087WT03 109 aa10.19□□□□□ -0.78
SHMT2-210ENST00000553950 TNFRSF6BO95407 300 aa10.19□□□□□ -0.78
SHMT2-210ENST00000553950 PMCHP20382 165 aa10.19□□□□□ -0.78
SHMT2-210ENST00000553950 SUMO2P61956 95 aaKnown RBP10.19□□□□□ -0.78
SHMT2-210ENST00000553950 RPL32P62910 135 aaKnown RBP10.19□□□□□ -0.78
SHMT2-210ENST00000553950 KIAA1644Q3SXP7 199 aa10.19□□□□□ -0.78
SHMT2-210ENST00000553950 NRACQ8N912 160 aa10.19□□□□□ -0.78
SHMT2-210ENST00000553950 PHLDA1Q8WV24 401 aaPredicted RBP10.19□□□□□ -0.78
SHMT2-210ENST00000553950 ALKBH7Q9BT30 221 aaPredicted RBP10.19□□□□□ -0.78
SHMT2-210ENST00000553950 SMKR1H3BMG3 65 aa10.18□□□□□ -0.78
SHMT2-210ENST00000553950 GYPEP15421 78 aa10.18□□□□□ -0.78
SHMT2-210ENST00000553950 RAB5BP61020 215 aa10.18□□□□□ -0.78
SHMT2-210ENST00000553950 MRPL23Q16540 153 aaKnown RBP10.18□□□□□ -0.78
SHMT2-210ENST00000553950 TMEM97Q5BJF2 176 aa10.18□□□□□ -0.78
SHMT2-210ENST00000553950 DAZ4Q86SG3 579 aaKnown RBP10.18□□□□□ -0.78
SHMT2-210ENST00000553950 NEXN-AS1Q8NBZ9 246 aa10.18□□□□□ -0.78
SHMT2-210ENST00000553950 RPL39LQ96EH5 51 aaKnown RBP10.18□□□□□ -0.78
SHMT2-210ENST00000553950 NXT2Q9NPJ8 142 aaKnown RBP10.18□□□□□ -0.78
SHMT2-210ENST00000553950 DAZ3Q9NR90 486 aaKnown RBP10.18□□□□□ -0.78
SHMT2-210ENST00000553950 K7EMI3 77 aa10.17□□□□□ -0.78
SHMT2-210ENST00000553950 NPYP01303 97 aa10.17□□□□□ -0.78
SHMT2-210ENST00000553950 Q6ZSN1 163 aa10.17□□□□□ -0.78
SHMT2-210ENST00000553950 SMIM2Q9BVW6 85 aa10.17□□□□□ -0.78
SHMT2-210ENST00000553950 KLK5Q9Y337 293 aaPredicted RBP10.17□□□□□ -0.78
SHMT2-210ENST00000553950 A0A0J9YY99 117 aa10.16□□□□□ -0.78
SHMT2-210ENST00000553950 SDHAF1A6NFY7 115 aa10.16□□□□□ -0.78
SHMT2-210ENST00000553950 PRSS47A8MTI9 375 aa10.16□□□□□ -0.78
SHMT2-210ENST00000553950 LINC00694P0DN24 101 aa10.16□□□□□ -0.78
SHMT2-210ENST00000553950 TCTAP57738 103 aa10.16□□□□□ -0.78
SHMT2-210ENST00000553950 VSIG2Q96IQ7 327 aa10.16□□□□□ -0.78
SHMT2-210ENST00000553950 WWC2-AS2Q96NR7 200 aa10.16□□□□□ -0.78
SHMT2-210ENST00000553950 KIR2DL4Q99706 377 aa10.16□□□□□ -0.78
SHMT2-210ENST00000553950 COL7A1Q02388 2944 aa10.16□□□□□ -0.78
SHMT2-210ENST00000553950 TRBV27A0A0K0K1C4 114 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 GAGE12JA6NER3 117 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 VCYO14598 125 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 P0DMU3 169 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 FAM231AP0DMU4 169 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 FAM231CP0DMU5 169 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 UBE2D3P61077 147 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 UBE2D2P62837 147 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 GAGE1Q13065 139 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 GAGE4Q13068 117 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 GAGE5Q13069 117 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 GAGE13Q4V321 117 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 ZNRF2Q8NHG8 242 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 TMEM70Q9BUB7 260 aa10.15□□□□□ -0.78
SHMT2-210ENST00000553950 I3L3M4 83 aa10.14□□□□□ -0.79
SHMT2-210ENST00000553950 CEMP1Q6PRD7 247 aaPredicted RBP10.14□□□□□ -0.79
SHMT2-210ENST00000553950 NEGR1Q7Z3B1 354 aa10.14□□□□□ -0.79
SHMT2-210ENST00000553950 C18orf32Q8TCD1 76 aa10.14□□□□□ -0.79
SHMT2-210ENST00000553950 POLR2KP53803 58 aaKnown RBP10.13□□□□□ -0.79
SHMT2-210ENST00000553950 Q0VG73 95 aa10.13□□□□□ -0.79
SHMT2-210ENST00000553950 COTL1Q14019 142 aa10.13□□□□□ -0.79
SHMT2-210ENST00000553950 FA2HQ7L5A8 372 aa10.13□□□□□ -0.79
SHMT2-210ENST00000553950 Q8N8P6 123 aa10.13□□□□□ -0.79
SHMT2-210ENST00000553950 ATP6V0E2Q8NHE4 81 aa10.13□□□□□ -0.79
SHMT2-210ENST00000553950 PRSS3P2Q8NHM4 247 aa10.13□□□□□ -0.79
SHMT2-210ENST00000553950 LOC100131303A0A0U1RQF7 123 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 HIST1H2BKO60814 126 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 GAS8-AS1O95177 125 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 HIST1H2BJP06899 126 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 HIST1H2BOP23527 126 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 G0S2P27469 103 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 FCER1GP30273 86 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 HIST1H2BBP33778 126 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 TIRAPP58753 221 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 HIST1H2BDP58876 126 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 HIST1H2BCP62807 126 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 HIST2H2BEQ16778 126 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.12□□□□□ -0.79
SHMT2-210ENST00000553950 BAGE3Q86Y29 109 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 MUC7Q8TAX7 377 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 HIST1H2BHQ93079 126 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 HIST1H2BNQ99877 126 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 HIST1H2BMQ99879 126 aa10.12□□□□□ -0.79
SHMT2-210ENST00000553950 LINC01549A6NIU2 74 aa10.11□□□□□ -0.79
SHMT2-210ENST00000553950 IGLL5B9A064 214 aa10.11□□□□□ -0.79
SHMT2-210ENST00000553950 NUDT3O95989 172 aa10.11□□□□□ -0.79
SHMT2-210ENST00000553950 ORMDL2Q53FV1 153 aa10.11□□□□□ -0.79
SHMT2-210ENST00000553950 CHCHD1Q96BP2 118 aaKnown RBP10.11□□□□□ -0.79
SHMT2-210ENST00000553950 GTSF1LQ9H1H1 148 aa10.11□□□□□ -0.79
SHMT2-210ENST00000553950 AP5S1Q9NUS5 200 aa10.11□□□□□ -0.79
SHMT2-210ENST00000553950 A0A096LPF7 62 aa10.1□□□□□ -0.79
SHMT2-210ENST00000553950 LOC389332A0A1B0GUA5 103 aa10.1□□□□□ -0.79
SHMT2-210ENST00000553950 PKIAP61925 76 aa10.1□□□□□ -0.79
SHMT2-210ENST00000553950 SMAGPQ0VAQ4 97 aa10.1□□□□□ -0.79
SHMT2-210ENST00000553950 TRBV25-1A0A075B6N4 114 aa10.09□□□□□ -0.79
SHMT2-210ENST00000553950 RNASEKQ6P5S7 137 aaKnown RBP10.09□□□□□ -0.79
SHMT2-210ENST00000553950 TMEM18Q96B42 140 aa10.09□□□□□ -0.79
SHMT2-210ENST00000553950 IGLV2-18A0A075B6J9 118 aa10.08□□□□□ -0.8
SHMT2-210ENST00000553950 IGHV1-24A0A0C4DH33 117 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 275 ms