RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 RBX1P62877 108 aa9.87□□□□□ -0.83
CLSTN3-213ENST00000541953 MIAQ16674 131 aa9.87□□□□□ -0.83
CLSTN3-213ENST00000541953 SDIM1Q6ZPB5 146 aa9.87□□□□□ -0.83
CLSTN3-213ENST00000541953 LINC00269Q8N2A0 174 aa9.87□□□□□ -0.83
CLSTN3-213ENST00000541953 NKX6-2Q9C056 277 aaPredicted RBP9.87□□□□□ -0.83
CLSTN3-213ENST00000541953 KIF25-AS1Q9Y6Z4 181 aa9.87□□□□□ -0.83
CLSTN3-213ENST00000541953 IGLV10-54A0A075B6I4 117 aa9.86□□□□□ -0.83
CLSTN3-213ENST00000541953 SLPIP03973 132 aa9.86□□□□□ -0.83
CLSTN3-213ENST00000541953 CHTF8P0CG12 524 aa9.86□□□□□ -0.83
CLSTN3-213ENST00000541953 AKR1C3P42330 323 aa9.86□□□□□ -0.83
CLSTN3-213ENST00000541953 ODF1Q14990 250 aa9.86□□□□□ -0.83
CLSTN3-213ENST00000541953 AKR1C8PQ5T2L2 129 aa9.86□□□□□ -0.83
CLSTN3-213ENST00000541953 CST9LP1Q5W188 147 aa9.86□□□□□ -0.83
CLSTN3-213ENST00000541953 VAX2Q9UIW0 290 aa9.86□□□□□ -0.83
CLSTN3-213ENST00000541953 BORCS7-ASMTA0A0B4J1R7 106 aa9.85□□□□□ -0.83
CLSTN3-213ENST00000541953 SCO2A0A1W2PP80 73 aa9.85□□□□□ -0.83
CLSTN3-213ENST00000541953 SNAI2O43623 268 aa9.85□□□□□ -0.83
CLSTN3-213ENST00000541953 PAGE4O60829 102 aa9.85□□□□□ -0.83
CLSTN3-213ENST00000541953 INO80EQ8NBZ0 244 aaPredicted RBP9.85□□□□□ -0.83
CLSTN3-213ENST00000541953 MLST8Q9BVC4 326 aa9.85□□□□□ -0.83
CLSTN3-213ENST00000541953 SSBP4Q9BWG4 385 aaPredicted RBP9.85□□□□□ -0.83
CLSTN3-213ENST00000541953 GFRA4Q9GZZ7 299 aa9.85□□□□□ -0.83
CLSTN3-213ENST00000541953 CIRBPQ14011 172 aaKnown RBP9.84□□□□□ -0.83
CLSTN3-213ENST00000541953 DGAT2L7PQ6IED9 249 aa9.84□□□□□ -0.83
CLSTN3-213ENST00000541953 A0A1B0GV50 99 aa9.83□□□□□ -0.84
CLSTN3-213ENST00000541953 DERL1Q9BUN8 251 aa9.83□□□□□ -0.84
CLSTN3-213ENST00000541953 ZNF471Q9BX82 626 aaPredicted RBP9.83□□□□□ -0.84
CLSTN3-213ENST00000541953 F5H697 171 aa9.82□□□□□ -0.84
CLSTN3-213ENST00000541953 CXCL1P09341 107 aa9.82□□□□□ -0.84
CLSTN3-213ENST00000541953 C20orf203Q8NBC4 194 aa9.82□□□□□ -0.84
CLSTN3-213ENST00000541953 STOML3Q8TAV4 291 aa9.82□□□□□ -0.84
CLSTN3-213ENST00000541953 IGLV4-60A0A075B6I1 120 aa9.81□□□□□ -0.84
CLSTN3-213ENST00000541953 OR5AL1P0C617 328 aa9.81□□□□□ -0.84
CLSTN3-213ENST00000541953 GZMBP10144 247 aa9.81□□□□□ -0.84
CLSTN3-213ENST00000541953 SMLR1H3BR10 107 aa9.8□□□□□ -0.84
CLSTN3-213ENST00000541953 ARPC5O15511 151 aa9.8□□□□□ -0.84
CLSTN3-213ENST00000541953 CNBPP62633 177 aaKnown RBP9.8□□□□□ -0.84
CLSTN3-213ENST00000541953 REG3AQ06141 175 aa9.8□□□□□ -0.84
CLSTN3-213ENST00000541953 IQCJQ1A5X6 159 aa9.8□□□□□ -0.84
CLSTN3-213ENST00000541953 SPANXN1Q5VSR9 72 aa9.8□□□□□ -0.84
CLSTN3-213ENST00000541953 TCEAL7Q9BRU2 100 aa9.8□□□□□ -0.84
CLSTN3-213ENST00000541953 TRBV25-1A0A075B6N4 114 aa9.79□□□□□ -0.84
CLSTN3-213ENST00000541953 A0A087WYN8 130 aa9.79□□□□□ -0.84
CLSTN3-213ENST00000541953 hDV102S1A0JD36 115 aa9.79□□□□□ -0.84
CLSTN3-213ENST00000541953 M0QY20 66 aa9.79□□□□□ -0.84
CLSTN3-213ENST00000541953 RAB5CP51148 216 aa9.79□□□□□ -0.84
CLSTN3-213ENST00000541953 BAGE2Q86Y30 109 aa9.79□□□□□ -0.84
CLSTN3-213ENST00000541953 SUMO4Q6EEV6 95 aa9.78□□□□□ -0.84
CLSTN3-213ENST00000541953 Q6ZRU5 148 aa9.78□□□□□ -0.84
CLSTN3-213ENST00000541953 SPACA4Q8TDM5 124 aa9.78□□□□□ -0.84
CLSTN3-213ENST00000541953 MGPP08493 103 aa9.77□□□□□ -0.85
CLSTN3-213ENST00000541953 PKIAP61925 76 aa9.77□□□□□ -0.85
CLSTN3-213ENST00000541953 FAM213BQ8TBF2 198 aa9.77□□□□□ -0.85
CLSTN3-213ENST00000541953 SFT2D1Q8WV19 159 aa9.77□□□□□ -0.85
CLSTN3-213ENST00000541953 AP1S3Q96PC3 154 aa9.77□□□□□ -0.85
CLSTN3-213ENST00000541953 IGHV1-24A0A0C4DH33 117 aa9.76□□□□□ -0.85
CLSTN3-213ENST00000541953 PHOX2AO14813 284 aa9.76□□□□□ -0.85
CLSTN3-213ENST00000541953 IGLC6P0CF74 106 aa9.76□□□□□ -0.85
CLSTN3-213ENST00000541953 NKX2-5P52952 324 aaPredicted RBP9.76□□□□□ -0.85
CLSTN3-213ENST00000541953 TMEM97Q5BJF2 176 aa9.76□□□□□ -0.85
CLSTN3-213ENST00000541953 C15orf56Q8N910 161 aa9.76□□□□□ -0.85
CLSTN3-213ENST00000541953 CLRN3Q8NCR9 226 aa9.76□□□□□ -0.85
CLSTN3-213ENST00000541953 MBD3L1Q8WWY6 194 aa9.76□□□□□ -0.85
CLSTN3-213ENST00000541953 A0A0D9SG52 128 aa9.75□□□□□ -0.85
CLSTN3-213ENST00000541953 RPL35P42766 123 aaKnown RBP9.75□□□□□ -0.85
CLSTN3-213ENST00000541953 TPPP3Q9BW30 176 aa9.75□□□□□ -0.85
CLSTN3-213ENST00000541953 IGHV3-64A0A075B6Q5 118 aa9.74□□□□□ -0.85
CLSTN3-213ENST00000541953 SMIM17P0DL12 118 aa9.74□□□□□ -0.85
CLSTN3-213ENST00000541953 TMUB2Q71RG4 321 aa9.74□□□□□ -0.85
CLSTN3-213ENST00000541953 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.74□□□□□ -0.85
CLSTN3-213ENST00000541953 PLAC8Q9NZF1 115 aa9.74□□□□□ -0.85
CLSTN3-213ENST00000541953 S100A9P06702 114 aaKnown RBP9.73□□□□□ -0.85
CLSTN3-213ENST00000541953 CCL20P78556 96 aa9.73□□□□□ -0.85
CLSTN3-213ENST00000541953 TMEM243Q9BU79 118 aa9.73□□□□□ -0.85
CLSTN3-213ENST00000541953 LPAP08519 4548 aa9.73□□□□□ -0.85
CLSTN3-213ENST00000541953 PFDN1O60925 122 aa9.72□□□□□ -0.85
CLSTN3-213ENST00000541953 FER1L6-AS1Q8NA97 138 aa9.72□□□□□ -0.85
CLSTN3-213ENST00000541953 TRAV8-4A0A0B4J246 113 aa9.71□□□□□ -0.86
CLSTN3-213ENST00000541953 A0A1B0GUV1 79 aa9.71□□□□□ -0.86
CLSTN3-213ENST00000541953 P01737 135 aa9.71□□□□□ -0.86
CLSTN3-213ENST00000541953 COX6A2Q02221 97 aa9.71□□□□□ -0.86
CLSTN3-213ENST00000541953 HIGD2BQ4VC39 106 aa9.71□□□□□ -0.86
CLSTN3-213ENST00000541953 CENPWQ5EE01 88 aa9.71□□□□□ -0.86
CLSTN3-213ENST00000541953 KCNRGQ8N5I3 272 aa9.71□□□□□ -0.86
CLSTN3-213ENST00000541953 PRSS3P2Q8NHM4 247 aa9.71□□□□□ -0.86
CLSTN3-213ENST00000541953 DPH3Q96FX2 82 aa9.71□□□□□ -0.86
CLSTN3-213ENST00000541953 RNF185Q96GF1 192 aa9.71□□□□□ -0.86
CLSTN3-213ENST00000541953 C19orf71A6NCJ1 209 aa9.7□□□□□ -0.86
CLSTN3-213ENST00000541953 GAGE12HA6NDE8 117 aa9.7□□□□□ -0.86
CLSTN3-213ENST00000541953 OR2D3Q8NGH3 330 aa9.7□□□□□ -0.86
CLSTN3-213ENST00000541953 IGKV2-24A0A0C4DH68 120 aa9.69□□□□□ -0.86
CLSTN3-213ENST00000541953 IGKV3OR2-268A0A0C4DH90 116 aa9.69□□□□□ -0.86
CLSTN3-213ENST00000541953 RAB19A4D1S5 217 aa9.69□□□□□ -0.86
CLSTN3-213ENST00000541953 PRR3P79522 188 aaKnown RBP9.69□□□□□ -0.86
CLSTN3-213ENST00000541953 RASL11AQ6T310 242 aa9.69□□□□□ -0.86
CLSTN3-213ENST00000541953 C11orf52Q96A22 123 aa9.69□□□□□ -0.86
CLSTN3-213ENST00000541953 AP5S1Q9NUS5 200 aa9.69□□□□□ -0.86
CLSTN3-213ENST00000541953 TRBV20OR9-2A0A075B6H5 130 aa9.68□□□□□ -0.86
CLSTN3-213ENST00000541953 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.68□□□□□ -0.86
CLSTN3-213ENST00000541953 PGLYRP4Q96LB8 373 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 176.7 ms