RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ZNRF2Q8NHG8 242 aa15.62■□□□□ 0.09
VPS28-205ENST00000526204 P0DMU3 169 aa15.61■□□□□ 0.09
VPS28-205ENST00000526204 FAM231AP0DMU4 169 aa15.61■□□□□ 0.09
VPS28-205ENST00000526204 FAM231CP0DMU5 169 aa15.61■□□□□ 0.09
VPS28-205ENST00000526204 DEFB136Q30KP8 78 aa15.61■□□□□ 0.09
VPS28-205ENST00000526204 RBMY1A1P0DJD3 496 aaKnown RBP15.61■□□□□ 0.09
VPS28-205ENST00000526204 RBMY1CP0DJD4 496 aa15.61■□□□□ 0.09
VPS28-205ENST00000526204 CENPEQ02224 2701 aa15.61■□□□□ 0.09
VPS28-205ENST00000526204 RBMY1FQ15415 496 aaKnown RBP15.61■□□□□ 0.09
VPS28-205ENST00000526204 C21orf62-AS1Q17RA5 79 aa15.61■□□□□ 0.09
VPS28-205ENST00000526204 PIK3CD-AS1Q5SR53 167 aa15.61■□□□□ 0.09
VPS28-205ENST00000526204 C4orf3Q8WVX3 66 aa15.61■□□□□ 0.09
VPS28-205ENST00000526204 USP9YO00507 2555 aaPredicted RBP15.6■□□□□ 0.09
VPS28-205ENST00000526204 ANKRD17O75179 2603 aaKnown RBP15.59■□□□□ 0.09
VPS28-205ENST00000526204 A0A0J9YY99 117 aa15.59■□□□□ 0.09
VPS28-205ENST00000526204 C18orf65Q6ZTR6 163 aa15.59■□□□□ 0.09
VPS28-205ENST00000526204 SPAG8Q99932 426 aaPredicted RBP15.59■□□□□ 0.09
VPS28-205ENST00000526204 AGRNO00468 2067 aa15.59■□□□□ 0.09
VPS28-205ENST00000526204 SPANXB1Q9NS25 103 aaPredicted RBP15.59■□□□□ 0.09
VPS28-205ENST00000526204 UBE2D1P51668 147 aa15.58■□□□□ 0.08
VPS28-205ENST00000526204 KRTAP10-9P60411 292 aa15.58■□□□□ 0.08
VPS28-205ENST00000526204 A8MWV9 139 aa15.58■□□□□ 0.08
VPS28-205ENST00000526204 HTN1P15515 57 aa15.58■□□□□ 0.08
VPS28-205ENST00000526204 J3QQQ9 107 aa15.57■□□□□ 0.08
VPS28-205ENST00000526204 TMEM61Q8N0U2 210 aa15.57■□□□□ 0.08
VPS28-205ENST00000526204 PTH2Q96A98 100 aa15.57■□□□□ 0.08
VPS28-205ENST00000526204 FBN2P35556 2912 aa15.57■□□□□ 0.08
VPS28-205ENST00000526204 M0R2P5 195 aa15.56■□□□□ 0.08
VPS28-205ENST00000526204 RPL24P83731 157 aaKnown RBP15.56■□□□□ 0.08
VPS28-205ENST00000526204 DUX3Q96PT4 197 aa15.56■□□□□ 0.08
VPS28-205ENST00000526204 VCX2Q9H322 139 aa15.56■□□□□ 0.08
VPS28-205ENST00000526204 H3BMG7 143 aa15.56■□□□□ 0.08
VPS28-205ENST00000526204 LGALS3P17931 250 aaKnown RBP15.56■□□□□ 0.08
VPS28-205ENST00000526204 SLC25A29Q8N8R3 303 aa15.56■□□□□ 0.08
VPS28-205ENST00000526204 MRPL16Q9NX20 251 aaKnown RBP15.56■□□□□ 0.08
VPS28-205ENST00000526204 PGPEP1Q9NXJ5 209 aa15.56■□□□□ 0.08
VPS28-205ENST00000526204 TSPEAR-AS2P59090 65 aa15.55■□□□□ 0.08
VPS28-205ENST00000526204 ZNF415Q09FC8 603 aa15.55■□□□□ 0.08
VPS28-205ENST00000526204 Q96MF0 132 aa15.55■□□□□ 0.08
VPS28-205ENST00000526204 OPRPNQ99935 248 aaPredicted RBP15.55■□□□□ 0.08
VPS28-205ENST00000526204 PYGO1Q9Y3Y4 419 aa15.55■□□□□ 0.08
VPS28-205ENST00000526204 TMEM223A0PJW6 202 aa15.55■□□□□ 0.08
VPS28-205ENST00000526204 DYNLRB2Q8TF09 96 aa15.55■□□□□ 0.08
VPS28-205ENST00000526204 IGLV4-3A0A075B6K6 122 aa15.54■□□□□ 0.08
VPS28-205ENST00000526204 RBMY1BA6NDE4 496 aaKnown RBP15.54■□□□□ 0.08
VPS28-205ENST00000526204 RBMY1EA6NEQ0 496 aaKnown RBP15.54■□□□□ 0.08
VPS28-205ENST00000526204 LEPROTO15243 131 aa15.54■□□□□ 0.08
VPS28-205ENST00000526204 RBMY1DP0C7P1 496 aaKnown RBP15.54■□□□□ 0.08
VPS28-205ENST00000526204 LINC00467Q9BRT7 94 aa15.53■□□□□ 0.08
VPS28-205ENST00000526204 TNFRSF18Q9Y5U5 241 aa15.53■□□□□ 0.08
VPS28-205ENST00000526204 DOPEY2Q9Y3R5 2298 aa15.53■□□□□ 0.08
VPS28-205ENST00000526204 PRRC2AP48634 2157 aaKnown RBP15.53■□□□□ 0.08
VPS28-205ENST00000526204 CRYBA4P53673 196 aa15.53■□□□□ 0.08
VPS28-205ENST00000526204 GAGE13Q4V321 117 aa15.53■□□□□ 0.08
VPS28-205ENST00000526204 KHDC1LQ5JSQ8 128 aa15.53■□□□□ 0.08
VPS28-205ENST00000526204 TMEM86BQ8N661 226 aa15.53■□□□□ 0.08
VPS28-205ENST00000526204 DLX4Q92988 240 aaPredicted RBP15.53■□□□□ 0.08
VPS28-205ENST00000526204 AMELXQ99217 191 aa15.53■□□□□ 0.08
VPS28-205ENST00000526204 MAP6D1Q9H9H5 199 aa15.53■□□□□ 0.08
VPS28-205ENST00000526204 CR1P17927 2039 aa15.52■□□□□ 0.08
VPS28-205ENST00000526204 TEX48A0A1B0GUV7 120 aa15.52■□□□□ 0.08
VPS28-205ENST00000526204 RAX2Q96IS3 184 aa15.52■□□□□ 0.08
VPS28-205ENST00000526204 IGHV3-73A0A0B4J1V6 119 aa15.52■□□□□ 0.07
VPS28-205ENST00000526204 RHODO00212 210 aa15.52■□□□□ 0.07
VPS28-205ENST00000526204 DEFB114Q30KQ6 69 aa15.52■□□□□ 0.07
VPS28-205ENST00000526204 IGHV3-30P01768 117 aa15.51■□□□□ 0.07
VPS28-205ENST00000526204 IGHV3-30-5P0DP03 117 aa15.51■□□□□ 0.07
VPS28-205ENST00000526204 ZNF22P17026 224 aaPredicted RBP15.51■□□□□ 0.07
VPS28-205ENST00000526204 WFDC2Q14508 124 aa15.51■□□□□ 0.07
VPS28-205ENST00000526204 ZANQ9Y493 2812 aa15.51■□□□□ 0.07
VPS28-205ENST00000526204 TEX29Q8N6K0 151 aa15.5■□□□□ 0.07
VPS28-205ENST00000526204 SPXQ9BT56 116 aa15.5■□□□□ 0.07
VPS28-205ENST00000526204 POLQO75417 2590 aa15.5■□□□□ 0.07
VPS28-205ENST00000526204 CHD6Q8TD26 2715 aa15.49■□□□□ 0.07
VPS28-205ENST00000526204 LYRM7Q5U5X0 104 aa15.49■□□□□ 0.07
VPS28-205ENST00000526204 NDUFA11Q86Y39 141 aa15.49■□□□□ 0.07
VPS28-205ENST00000526204 LINC01587Q99440 93 aa15.49■□□□□ 0.07
VPS28-205ENST00000526204 TSPAN13O95857 204 aa15.49■□□□□ 0.07
VPS28-205ENST00000526204 PROK1P58294 105 aa15.49■□□□□ 0.07
VPS28-205ENST00000526204 COTL1Q14019 142 aa15.49■□□□□ 0.07
VPS28-205ENST00000526204 CLUHP3Q96NS8 147 aa15.49■□□□□ 0.07
VPS28-205ENST00000526204 A0A0J9YXV3 536 aa15.48■□□□□ 0.07
VPS28-205ENST00000526204 J3QR89 54 aa15.48■□□□□ 0.07
VPS28-205ENST00000526204 APOMO95445 188 aa15.48■□□□□ 0.07
VPS28-205ENST00000526204 INSP01308 110 aa15.48■□□□□ 0.07
VPS28-205ENST00000526204 CD28P10747 220 aa15.48■□□□□ 0.07
VPS28-205ENST00000526204 CFAP126Q5VTH2 177 aa15.48■□□□□ 0.07
VPS28-205ENST00000526204 PRO0461Q9UI25 63 aa15.48■□□□□ 0.07
VPS28-205ENST00000526204 SORL1Q92673 2214 aa15.47■□□□□ 0.07
VPS28-205ENST00000526204 MXRA5Q9NR99 2828 aa15.47■□□□□ 0.07
VPS28-205ENST00000526204 CREBBPQ92793 2442 aa15.47■□□□□ 0.07
VPS28-205ENST00000526204 C11orf72Q8NBR9 251 aa15.47■□□□□ 0.07
VPS28-205ENST00000526204 DNAJC30Q96LL9 226 aa15.46■□□□□ 0.07
VPS28-205ENST00000526204 PRM2P04554 102 aa15.46■□□□□ 0.06
VPS28-205ENST00000526204 MRPS36P82909 103 aaKnown RBP15.46■□□□□ 0.06
VPS28-205ENST00000526204 BEAN1Q3B7T3 259 aa15.46■□□□□ 0.06
VPS28-205ENST00000526204 KRTAP1-3Q8IUG1 177 aa15.46■□□□□ 0.06
VPS28-205ENST00000526204 TRAV25A0A0B4J276 109 aa15.45■□□□□ 0.06
VPS28-205ENST00000526204 CFC1BP0CG36 223 aa15.45■□□□□ 0.06
VPS28-205ENST00000526204 CFC1P0CG37 223 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms