RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 AP1S3Q96PC3 154 aa6.5□□□□□ -1.37
RNF4-221ENST00000513643 A0A087WTM6 91 aa6.49□□□□□ -1.37
RNF4-221ENST00000513643 NTM-AS1Q6ZSK4 140 aa6.49□□□□□ -1.37
RNF4-221ENST00000513643 EIF5A2Q9GZV4 153 aaKnown RBP6.49□□□□□ -1.37
RNF4-221ENST00000513643 TRBV6-8A0A0A6YYG3 113 aa6.48□□□□□ -1.37
RNF4-221ENST00000513643 SRSF3P84103 164 aaKnown RBP6.48□□□□□ -1.37
RNF4-221ENST00000513643 ZNF56Q15929 161 aa6.48□□□□□ -1.37
RNF4-221ENST00000513643 SPATA12Q7Z6I5 190 aa6.48□□□□□ -1.37
RNF4-221ENST00000513643 CHCHD7Q9BUK0 85 aa6.48□□□□□ -1.37
RNF4-221ENST00000513643 KRTAP17-1Q9BYP8 105 aa6.48□□□□□ -1.37
RNF4-221ENST00000513643 SMDT1Q9H4I9 107 aa6.48□□□□□ -1.37
RNF4-221ENST00000513643 PGPEP1Q9NXJ5 209 aa6.48□□□□□ -1.37
RNF4-221ENST00000513643 FAM231BA6NCW3 169 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 C16orf90A8MZG2 172 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 IGHV3-30P01768 117 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 IGHV3-33P01772 117 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 IGHV3-30-3P0DP02 117 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 IGHV3-30-5P0DP03 117 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 SSTP61278 116 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 FAM74A3Q4VXF1 159 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 SUMO4Q6EEV6 95 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 ATRAIDQ6UW56 229 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 DAZ4Q86SG3 579 aaKnown RBP6.47□□□□□ -1.37
RNF4-221ENST00000513643 DNAJC30Q96LL9 226 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 SMIM7Q9BQ49 75 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 TPPP3Q9BW30 176 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 GFRA4Q9GZZ7 299 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 DPH3P1Q9H4G8 78 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 DAZ3Q9NR90 486 aaKnown RBP6.47□□□□□ -1.37
RNF4-221ENST00000513643 OSTCQ9NRP0 149 aa6.47□□□□□ -1.37
RNF4-221ENST00000513643 ZNF727A8MUV8 499 aa6.46□□□□□ -1.38
RNF4-221ENST00000513643 A8MWL6 223 aa6.46□□□□□ -1.38
RNF4-221ENST00000513643 F5H697 171 aa6.46□□□□□ -1.38
RNF4-221ENST00000513643 GATCO43716 136 aaKnown RBP6.46□□□□□ -1.38
RNF4-221ENST00000513643 CDK2AP2O75956 126 aa6.46□□□□□ -1.38
RNF4-221ENST00000513643 TRGC1P0CF51 173 aa6.46□□□□□ -1.38
RNF4-221ENST00000513643 SMIM17P0DL12 118 aa6.46□□□□□ -1.38
RNF4-221ENST00000513643 ERVFC1-1P60608 527 aa6.46□□□□□ -1.38
RNF4-221ENST00000513643 MAPKAPK5-AS1Q8N8E1 139 aa6.46□□□□□ -1.38
RNF4-221ENST00000513643 TSKUQ8WUA8 353 aa6.46□□□□□ -1.38
RNF4-221ENST00000513643 FRZBQ92765 325 aa6.46□□□□□ -1.38
RNF4-221ENST00000513643 V9GYV3 84 aa6.46□□□□□ -1.38
RNF4-221ENST00000513643 TRAV8-3A0A0A6YYJ7 113 aa6.45□□□□□ -1.38
RNF4-221ENST00000513643 H7C1H1 209 aa6.45□□□□□ -1.38
RNF4-221ENST00000513643 RPL23P62829 140 aaKnown RBP6.45□□□□□ -1.38
RNF4-221ENST00000513643 IQCJQ1A5X6 159 aa6.45□□□□□ -1.38
RNF4-221ENST00000513643 TMEM241Q24JQ0 296 aa6.45□□□□□ -1.38
RNF4-221ENST00000513643 TMEM97Q5BJF2 176 aa6.45□□□□□ -1.38
RNF4-221ENST00000513643 CDPF1Q6NVV7 123 aa6.45□□□□□ -1.38
RNF4-221ENST00000513643 RASL11AQ6T310 242 aa6.45□□□□□ -1.38
RNF4-221ENST00000513643 ISOC2Q96AB3 205 aa6.45□□□□□ -1.38
RNF4-221ENST00000513643 NIT2Q9NQR4 276 aa6.45□□□□□ -1.38
RNF4-221ENST00000513643 CEBPGP53567 150 aa6.44□□□□□ -1.38
RNF4-221ENST00000513643 PEA15Q15121 130 aa6.44□□□□□ -1.38
RNF4-221ENST00000513643 TWIST1Q15672 202 aa6.44□□□□□ -1.38
RNF4-221ENST00000513643 GATD1Q8NB37 220 aa6.44□□□□□ -1.38
RNF4-221ENST00000513643 PGLYRP4Q96LB8 373 aa6.44□□□□□ -1.38
RNF4-221ENST00000513643 VPS13BQ7Z7G8 4022 aa6.44□□□□□ -1.38
RNF4-221ENST00000513643 HIGD1CA8MV81 97 aa6.43□□□□□ -1.38
RNF4-221ENST00000513643 ENHOQ6UWT2 76 aa6.43□□□□□ -1.38
RNF4-221ENST00000513643 TM2D2Q9BX73 214 aa6.43□□□□□ -1.38
RNF4-221ENST00000513643 PRR34Q9NV39 138 aa6.43□□□□□ -1.38
RNF4-221ENST00000513643 NAT8Q9UHE5 227 aa6.43□□□□□ -1.38
RNF4-221ENST00000513643 TMA7Q9Y2S6 64 aaKnown RBP6.43□□□□□ -1.38
RNF4-221ENST00000513643 TRBV6-5A0A0K0K1A5 114 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 MGPP08493 103 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 FUSP35637 526 aaKnown RBP eCLIP6.42□□□□□ -1.383e-6■□□□□ 10.6
RNF4-221ENST00000513643 WFDC2Q14508 124 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 ELOBQ15370 118 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 MPV17L2Q567V2 206 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 KRTAP26-1Q6PEX3 210 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 Q8N814 137 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 NUP35Q8NFH5 326 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 RNF185Q96GF1 192 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 TMEM191AQ9H0A3 160 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 Q9HAA7 133 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 KLK12Q9UKR0 248 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 COX11Q9Y6N1 276 aa6.42□□□□□ -1.38
RNF4-221ENST00000513643 A0A087WX48 190 aa6.41□□□□□ -1.38
RNF4-221ENST00000513643 TRAV26-2A0A0B4J265 109 aa6.41□□□□□ -1.38
RNF4-221ENST00000513643 A0A1B0GUT8 65 aa6.41□□□□□ -1.38
RNF4-221ENST00000513643 A0A1B0GUV1 79 aa6.41□□□□□ -1.38
RNF4-221ENST00000513643 SMIM27A0A1W2PRY6 76 aa6.41□□□□□ -1.38
RNF4-221ENST00000513643 EREGO14944 169 aa6.41□□□□□ -1.38
RNF4-221ENST00000513643 KRTAP10-1P60331 282 aa6.41□□□□□ -1.38
RNF4-221ENST00000513643 PKIAP61925 76 aa6.41□□□□□ -1.38
RNF4-221ENST00000513643 RBX1P62877 108 aa6.41□□□□□ -1.38
RNF4-221ENST00000513643 IFITM2Q01629 132 aa6.41□□□□□ -1.38
RNF4-221ENST00000513643 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.41□□□□□ -1.38
RNF4-221ENST00000513643 NTN5Q8WTR8 489 aaPredicted RBP6.41□□□□□ -1.38
RNF4-221ENST00000513643 URGCP-MRPS24S4R325 110 aa6.41□□□□□ -1.38
RNF4-221ENST00000513643 TRBV25-1A0A075B6N4 114 aa6.4□□□□□ -1.38
RNF4-221ENST00000513643 IGHV1-24A0A0C4DH33 117 aa6.4□□□□□ -1.38
RNF4-221ENST00000513643 GAS8-AS1O95177 125 aa6.4□□□□□ -1.38
RNF4-221ENST00000513643 RAB4AP20338 218 aa6.4□□□□□ -1.38
RNF4-221ENST00000513643 XGP55808 180 aa6.4□□□□□ -1.38
RNF4-221ENST00000513643 Q0VG73 95 aa6.4□□□□□ -1.38
RNF4-221ENST00000513643 C15orf54Q8N8G6 183 aa6.4□□□□□ -1.38
RNF4-221ENST00000513643 Q8N976 141 aa6.4□□□□□ -1.38
RNF4-221ENST00000513643 TMEM262E9PQX1 116 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms