RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 MRPL23Q16540 153 aaKnown RBP6.97□□□□□ -1.29
NUP54-203ENST00000504173 KCNIP4Q6PIL6 250 aa6.97□□□□□ -1.29
NUP54-203ENST00000504173 IMMP2LQ96T52 175 aa6.97□□□□□ -1.29
NUP54-203ENST00000504173 DNAH17Q9UFH2 4485 aa6.96□□□□□ -1.29
NUP54-203ENST00000504173 A0A1B0GW15 77 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 GAGE12JA6NER3 117 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 S100A8P05109 93 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 P0DMU3 169 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 FAM231AP0DMU4 169 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 FAM231CP0DMU5 169 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 S100PP25815 95 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 HBBP68871 147 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 GAGE1Q13065 139 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 GAGE4Q13068 117 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 GAGE5Q13069 117 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 GAGE13Q4V321 117 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 SUMO4Q6EEV6 95 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 LINC00336Q6ZUF6 198 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 ATP5L2Q7Z4Y8 100 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 TMEM191AQ9H0A3 160 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 TMEM242Q9NWH2 141 aa6.96□□□□□ -1.3
NUP54-203ENST00000504173 TRBV10-1A0A0K0K1A3 114 aa6.95□□□□□ -1.3
NUP54-203ENST00000504173 A0A1B0GXF2 115 aa6.95□□□□□ -1.3
NUP54-203ENST00000504173 H7C1H1 209 aa6.95□□□□□ -1.3
NUP54-203ENST00000504173 LGALS9CQ6DKI2 356 aa6.95□□□□□ -1.3
NUP54-203ENST00000504173 NEGR1Q7Z3B1 354 aa6.95□□□□□ -1.3
NUP54-203ENST00000504173 SH2D6Q7Z4S9 175 aa6.95□□□□□ -1.3
NUP54-203ENST00000504173 UBE2DNLQ8IWF7 75 aa6.95□□□□□ -1.3
NUP54-203ENST00000504173 BTF3L4Q96K17 158 aa6.95□□□□□ -1.3
NUP54-203ENST00000504173 URGCP-MRPS24S4R325 110 aa6.95□□□□□ -1.3
NUP54-203ENST00000504173 PKD1P98161 4303 aa6.95□□□□□ -1.3
NUP54-203ENST00000504173 TRAV9-1A0A075B6T8 112 aa6.94□□□□□ -1.3
NUP54-203ENST00000504173 M0QY20 66 aa6.94□□□□□ -1.3
NUP54-203ENST00000504173 CCL18P55774 89 aa6.94□□□□□ -1.3
NUP54-203ENST00000504173 RPL36AP83881 106 aaKnown RBP6.94□□□□□ -1.3
NUP54-203ENST00000504173 AMN1Q8IY45 258 aa6.94□□□□□ -1.3
NUP54-203ENST00000504173 NEXN-AS1Q8NBZ9 246 aa6.94□□□□□ -1.3
NUP54-203ENST00000504173 ZNRF2Q8NHG8 242 aa6.94□□□□□ -1.3
NUP54-203ENST00000504173 RPL36ALQ969Q0 106 aaKnown RBP6.94□□□□□ -1.3
NUP54-203ENST00000504173 Q9UF83 564 aa6.94□□□□□ -1.3
NUP54-203ENST00000504173 TRBV7-3A0A075B6L6 115 aa6.93□□□□□ -1.3
NUP54-203ENST00000504173 TRAV26-2A0A0B4J265 109 aa6.93□□□□□ -1.3
NUP54-203ENST00000504173 LINC00694P0DN24 101 aa6.93□□□□□ -1.3
NUP54-203ENST00000504173 RAB4AP20338 218 aa6.93□□□□□ -1.3
NUP54-203ENST00000504173 RASL11AQ6T310 242 aa6.93□□□□□ -1.3
NUP54-203ENST00000504173 GATD1Q8NB37 220 aa6.93□□□□□ -1.3
NUP54-203ENST00000504173 ATP6V0E2Q8NHE4 81 aa6.93□□□□□ -1.3
NUP54-203ENST00000504173 RNF185Q96GF1 192 aa6.93□□□□□ -1.3
NUP54-203ENST00000504173 ESRGQ1W209 222 aa6.92□□□□□ -1.3
NUP54-203ENST00000504173 FAM104BQ5XKR9 115 aa6.92□□□□□ -1.3
NUP54-203ENST00000504173 ATRAIDQ6UW56 229 aa6.92□□□□□ -1.3
NUP54-203ENST00000504173 LYPD5Q6UWN5 251 aa6.92□□□□□ -1.3
NUP54-203ENST00000504173 MRAP2Q96G30 205 aa6.92□□□□□ -1.3
NUP54-203ENST00000504173 DNAJC30Q96LL9 226 aa6.92□□□□□ -1.3
NUP54-203ENST00000504173 LINC00588Q9Y4M8 146 aa6.92□□□□□ -1.3
NUP54-203ENST00000504173 TNFRSF18Q9Y5U5 241 aa6.92□□□□□ -1.3
NUP54-203ENST00000504173 UBE2D3P61077 147 aa6.91□□□□□ -1.3
NUP54-203ENST00000504173 UBE2D2P62837 147 aa6.91□□□□□ -1.3
NUP54-203ENST00000504173 MRPL51Q4U2R6 128 aaKnown RBP6.91□□□□□ -1.3
NUP54-203ENST00000504173 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.91□□□□□ -1.3
NUP54-203ENST00000504173 FRZBQ92765 325 aa6.91□□□□□ -1.3
NUP54-203ENST00000504173 GTSF1LQ9H1H1 148 aa6.91□□□□□ -1.3
NUP54-203ENST00000504173 NIT2Q9NQR4 276 aa6.91□□□□□ -1.3
NUP54-203ENST00000504173 IGHV3-38A0A0C4DH36 116 aa6.9□□□□□ -1.3
NUP54-203ENST00000504173 SMKR1H3BMG3 65 aa6.9□□□□□ -1.3
NUP54-203ENST00000504173 LCE2BO14633 110 aa6.9□□□□□ -1.3
NUP54-203ENST00000504173 NCR2O95944 276 aa6.9□□□□□ -1.3
NUP54-203ENST00000504173 TIRAPP58753 221 aa6.9□□□□□ -1.3
NUP54-203ENST00000504173 OR10J3Q5JRS4 329 aa6.9□□□□□ -1.3
NUP54-203ENST00000504173 RPL39LQ96EH5 51 aaKnown RBP6.9□□□□□ -1.3
NUP54-203ENST00000504173 MRPS16Q9Y3D3 137 aaKnown RBP6.9□□□□□ -1.3
NUP54-203ENST00000504173 TGIF2-C20orf24A0A0A6YYL0 155 aa6.89□□□□□ -1.31
NUP54-203ENST00000504173 GAS8-AS1O95177 125 aa6.89□□□□□ -1.31
NUP54-203ENST00000504173 CKS2P33552 79 aa6.89□□□□□ -1.31
NUP54-203ENST00000504173 ELOBQ15370 118 aa6.89□□□□□ -1.31
NUP54-203ENST00000504173 DAZ4Q86SG3 579 aaKnown RBP6.89□□□□□ -1.31
NUP54-203ENST00000504173 DAZ3Q9NR90 486 aaKnown RBP6.89□□□□□ -1.31
NUP54-203ENST00000504173 SMCO4Q9NRQ5 59 aa6.89□□□□□ -1.31
NUP54-203ENST00000504173 SRRM2Q9UQ35 2752 aaKnown RBP6.89□□□□□ -1.31
NUP54-203ENST00000504173 D6R8Y8 96 aa6.88□□□□□ -1.31
NUP54-203ENST00000504173 PPP1R17O96001 155 aa6.88□□□□□ -1.31
NUP54-203ENST00000504173 HLA-DQA1P01909 254 aa6.88□□□□□ -1.31
NUP54-203ENST00000504173 RPS10P46783 165 aaKnown RBP6.88□□□□□ -1.31
NUP54-203ENST00000504173 COX19Q49B96 90 aa6.88□□□□□ -1.31
NUP54-203ENST00000504173 LELP1Q5T871 98 aa6.88□□□□□ -1.31
NUP54-203ENST00000504173 TMEM136Q6ZRR5 245 aa6.88□□□□□ -1.31
NUP54-203ENST00000504173 CBLN2Q8IUK8 224 aa6.88□□□□□ -1.31
NUP54-203ENST00000504173 UPK3BQ9BT76 320 aa6.88□□□□□ -1.31
NUP54-203ENST00000504173 ST20Q9HBF5 79 aa6.88□□□□□ -1.31
NUP54-203ENST00000504173 TRBV24-1A0A075B6N3 115 aa6.87□□□□□ -1.31
NUP54-203ENST00000504173 TRAV8-6A0A0B4J262 113 aa6.87□□□□□ -1.31
NUP54-203ENST00000504173 TRBV6-5A0A0K0K1A5 114 aa6.87□□□□□ -1.31
NUP54-203ENST00000504173 SDHAF1A6NFY7 115 aa6.87□□□□□ -1.31
NUP54-203ENST00000504173 CDK2AP2O75956 126 aa6.87□□□□□ -1.31
NUP54-203ENST00000504173 PPBPP02775 128 aa6.87□□□□□ -1.31
NUP54-203ENST00000504173 TMEM97Q5BJF2 176 aa6.87□□□□□ -1.31
NUP54-203ENST00000504173 ORMDL3Q8N138 153 aa6.87□□□□□ -1.31
NUP54-203ENST00000504173 MAPKAPK5-AS1Q8N8E1 139 aa6.87□□□□□ -1.31
NUP54-203ENST00000504173 NRACQ8N912 160 aa6.87□□□□□ -1.31
NUP54-203ENST00000504173 GNB1LQ9BYB4 327 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms