RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 TIRAPP58753 221 aa12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 LOXL1Q08397 574 aaPredicted RBP12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 ESM1Q9NQ30 184 aa12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 INSL3P51460 131 aa12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 Q6ZPA2 131 aa12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 CITED2Q99967 270 aaPredicted RBP12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 IGHV1-58A0A0C4DH39 117 aa12.58□□□□□ -0.4
PCDHA1-203ENST00000504120 RS1O15537 224 aa12.58□□□□□ -0.4
PCDHA1-203ENST00000504120 DAND5Q8N907 189 aa12.58□□□□□ -0.4
PCDHA1-203ENST00000504120 A0A0B4J2C4 111 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 IGLV2-8P01709 118 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 SPATA12Q7Z6I5 190 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 TAX1BP3O14907 124 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 DEFB135Q30KP9 77 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 CRIP3Q6Q6R5 217 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 ODF3Q96PU9 254 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 MAP6D1Q9H9H5 199 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 ZNF80P51504 273 aaPredicted RBP12.56□□□□□ -0.4
PCDHA1-203ENST00000504120 IGF1P05019 195 aa12.56□□□□□ -0.4
PCDHA1-203ENST00000504120 PRO0255Q9UI72 69 aa12.55□□□□□ -0.4
PCDHA1-203ENST00000504120 F8W735 103 aaPredicted RBP12.55□□□□□ -0.4
PCDHA1-203ENST00000504120 EIF4EBP1Q13541 118 aaPredicted RBP12.55□□□□□ -0.4
PCDHA1-203ENST00000504120 SPAG11BQ08648 103 aa12.55□□□□□ -0.4
PCDHA1-203ENST00000504120 ZNF295-AS1Q8N0V1 137 aa12.55□□□□□ -0.4
PCDHA1-203ENST00000504120 DYSFO75923 2080 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 PCDH15Q96QU1 1955 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 LGALS9O00182 355 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 NDUFS5O43920 106 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 JMJD7-PLA2G4BH0Y9G9 81 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 DNAJC9-AS1A6NH13 148 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 WFDC2Q14508 124 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 LINC00322Q6ZN03 302 aaPredicted RBP12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 LRRC75A-AS1Q8N1F1 130 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 MLST8Q9BVC4 326 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 TRBV10-2A0A0K0K1G8 114 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 IGLC6P0CF74 106 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 TM2D2Q9BX73 214 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 TNRC6AQ8NDV7 1962 aaKnown RBP12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 LINC01548A6NM66 108 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 H3BT86 120 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 BDP1A6H8Y1 2624 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 SMAD5-AS1Q9Y6J3 95 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 NCR3O14931 201 aa12.52□□□□□ -0.4
PCDHA1-203ENST00000504120 MIR7-3HGQ8N6C7 128 aa12.52□□□□□ -0.4
PCDHA1-203ENST00000504120 C1orf229Q6ZS94 237 aaPredicted RBP12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 PTPRQQ9UMZ3 2332 aa12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 LECT2O14960 151 aa12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 TMEM258P61165 79 aa12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 RBM3P98179 157 aaKnown RBP12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 KLK12Q9UKR0 248 aa12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 CRYGBP07316 175 aa12.51□□□□□ -0.41
PCDHA1-203ENST00000504120 PRORYQ9H606 182 aa12.51□□□□□ -0.41
PCDHA1-203ENST00000504120 DEFB4AO15263 64 aa12.51□□□□□ -0.41
PCDHA1-203ENST00000504120 FOXI1Q12951 378 aa12.5□□□□□ -0.41
PCDHA1-203ENST00000504120 NREPQ16612 68 aa12.5□□□□□ -0.41
PCDHA1-203ENST00000504120 EBI3Q14213 229 aa12.5□□□□□ -0.41
PCDHA1-203ENST00000504120 DIRC1Q969H9 104 aa12.5□□□□□ -0.41
PCDHA1-203ENST00000504120 ATOX1O00244 68 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 Q6YL49 198 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 Q6ZUT4 128 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 CHD3Q12873 2000 aaKnown RBP12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 K7EQG2 157 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 PTPRSQ13332 1948 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 GDF5OSQ5U4N7 250 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 C22orf34Q6ZV56 151 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 NDUFB1O75438 58 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 CLEC2BQ92478 149 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 B5MCH6 92 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 C19orf84I3L1E1 186 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 MIAQ16674 131 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 NDUFA11Q86Y39 141 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 NCOA6Q14686 2063 aaPredicted RBP12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 LY6LH3BQJ8 138 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 NFE4Q86UQ8 179 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 MBD6Q96DN6 1003 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 IGHV4-28A0A0C4DH34 117 aa12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 IGKV3D-7A0A0C4DH55 119 aa12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 TP53TG3Q9ULZ0 132 aa12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 ANKHD1Q8IWZ3 2542 aaKnown RBP12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 CEMP1Q6PRD7 247 aaPredicted RBP12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 FREM1Q5H8C1 2179 aa12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 TMEM256-PLSCR3K7ERE1 68 aa12.46□□□□□ -0.41
PCDHA1-203ENST00000504120 PSMB8P28062 276 aa12.46□□□□□ -0.42
PCDHA1-203ENST00000504120 IGHV4-31P0DP07 118 aa12.46□□□□□ -0.42
PCDHA1-203ENST00000504120 UBE2AP49459 152 aa12.46□□□□□ -0.42
PCDHA1-203ENST00000504120 A0A1B0GX51 115 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 ACACBO00763 2458 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 Q6ZTI0 123 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 OTOGLQ3ZCN5 2332 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 NUP210LQ5VU65 1888 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 PLA2G5P39877 138 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 RNASE8Q8TDE3 154 aaKnown RBP12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 DEFB114Q30KQ6 69 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 ZFAND3Q9H8U3 227 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 NACAE9PAV3 2078 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 FAM236AA0A1B0GUQ0 79 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 FAM236BA0A1B0GV22 79 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 P0DMU3 169 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 FAM231AP0DMU4 169 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 FAM231CP0DMU5 169 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms