RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TGFAP01135 160 aa12□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 C12orf74Q32Q52 190 aa12□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 LRRC75A-AS1Q8N1F1 130 aa12□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 CRYGDP07320 174 aa11.99□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 CDIP1Q9H305 208 aa11.99□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 NSD1Q96L73 2696 aaPredicted RBP11.99□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 DUSP14O95147 198 aaKnown RBP11.99□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 TSHBP01222 138 aa11.99□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 FAM159AQ6UWV7 190 aa11.99□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 ATP6V0E2Q8NHE4 81 aa11.99□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 HIST1H4GQ99525 98 aa11.99□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 SETD2Q9BYW2 2564 aaPredicted RBP11.99□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 LGALS1P09382 135 aaKnown RBP11.98□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 PSMB8P28062 276 aa11.98□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 ID1P41134 155 aa11.98□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 POLR2KP53803 58 aaKnown RBP11.98□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 SUMO4Q6EEV6 95 aa11.98□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 SH2D6Q7Z4S9 175 aa11.98□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 ZNF580Q9UK33 172 aa11.98□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 HIVEP2P31629 2446 aa11.98□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 C10orf99Q6UWK7 81 aa11.98□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 TRAV12-3A0A0B4J271 114 aa11.97□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 B5MCH6 92 aa11.97□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 IGHV4-31P0DP07 118 aa11.97□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 PRADC1Q9BSG0 188 aa11.97□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 SPANXA1Q9NS26 97 aa11.97□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 A0A1B0GWB2 263 aa11.96□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 GAGE13Q4V321 117 aa11.96□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 Q6ZUT4 128 aa11.96□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 A0A087WWL8 130 aa11.96□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 IGIPA6NJ69 53 aa11.96□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 B4DSR2 109 aa11.96□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 CD7P09564 240 aa11.96□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 DSCR9P59020 149 aa11.96□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 ZFP2Q6ZN57 461 aa11.96□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 DEFB104AQ8WTQ1 72 aa11.96□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 VCX2Q9H322 139 aa11.96□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 JMJD1CQ15652 2540 aa11.96□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 IGLV4-69A0A075B6H9 119 aa11.95□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 IGHV4-59P01825 116 aa11.95□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 SMIM20Q8N5G0 67 aa11.95□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 PRO0461Q9UI25 63 aa11.95□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 TP53TG1Q9Y2A0 90 aa11.95□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 MT-ATP8P03928 68 aa11.95□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 SYT8Q8NBV8 401 aa11.95□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 C9orf85Q96MD7 179 aa11.95□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 FN1P02751 2386 aaKnown RBP11.95□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 FOXI1Q12951 378 aa11.94□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 DEFB112Q30KQ8 113 aa11.94□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 SPXQ9BT56 116 aa11.94□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 IGHV3-16A0A0C4DH30 117 aa11.94□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 C11orf86A6NJI1 115 aa11.94□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 LGALS9O00182 355 aa11.94□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 ZNF688P0C7X2 276 aa11.94□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 PLEKHB2Q96CS7 222 aa11.94□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 ODF3Q96PU9 254 aa11.94□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 C1QTNF4Q9BXJ3 329 aa11.94□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 A0A0J9YX75 114 aa11.93□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 VCYO14598 125 aa11.93□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 APOMO95445 188 aa11.93□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 INSL3P51460 131 aa11.93□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 RPL39P62891 51 aaKnown RBP11.93□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 RRN3P1Q2M238 152 aa11.93□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 MDFICQ9P1T7 246 aa11.93□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 TRAV12-2A0A075B6T6 113 aa11.92□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 MORN3Q6PF18 240 aaPredicted RBP11.92□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 YAE1D1Q9NRH1 226 aa11.92□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 TRBV6-5A0A0K0K1A5 114 aa11.92□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 ZNF815PA8K554 130 aa11.92□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 K7EQG2 157 aa11.92□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 ZFAND6Q6FIF0 208 aa11.92□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 LINC01356Q8N9X3 169 aa11.92□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 TRBV27A0A0K0K1C4 114 aa11.91□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 SDHAF1A6NFY7 115 aa11.91□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 F5H697 171 aa11.91□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 H3BMG7 143 aa11.91□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 XGP55808 180 aa11.91□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 KLHL30-AS1Q8NEE0 82 aa11.91□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 IGKV3-20P01619 116 aa11.91□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 EMP1P54849 157 aa11.91□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 KRTAP1-1Q07627 177 aa11.91□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 PMVKQ15126 192 aa11.91□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 TMEM89A2RUT3 159 aa11.9□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 LINC01549A6NIU2 74 aa11.9□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 TMEM141Q96I45 108 aa11.9□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 TIMM17AQ99595 171 aa11.9□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 KIR2DL4Q99706 377 aa11.9□□□□□ -0.5
MSH5-SAPCD1-208ENST00000498473 GAGE12JA6NER3 117 aa11.9□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 GAGE7O76087 117 aa11.9□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 GAGE12FP0CL80 117 aa11.9□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 GAGE12GP0CL81 117 aa11.9□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 GAGE12IP0CL82 117 aa11.9□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 GAGE4Q13068 117 aa11.9□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 Q8N1Y9 231 aa11.9□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 M0QY20 66 aa11.89□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 FAM74A4Q5TZK3 123 aa11.89□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 TEX29Q8N6K0 151 aa11.89□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 HOXA3O43365 443 aaPredicted RBP11.88□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 AMTNQ6UX39 209 aa11.88□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 SNRPD3P62318 126 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms