RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	LINC00528	Q8N1L1	170 aa		7.61	□□□□□ -1.19
VTI1A-208	ENST00000494728	KIF25-AS1	Q9Y6Z4	181 aa		7.61	□□□□□ -1.19
VTI1A-208	ENST00000494728	URGCP-MRPS24	S4R325	110 aa		7.61	□□□□□ -1.19
VTI1A-208	ENST00000494728		A0A087WX48	190 aa		7.6	□□□□□ -1.19
VTI1A-208	ENST00000494728	RBFOX3	A6NFN3	312 aa		7.6	□□□□□ -1.19
VTI1A-208	ENST00000494728	IGLV2-8	P01709	118 aa		7.6	□□□□□ -1.19
VTI1A-208	ENST00000494728	OR5AL1	P0C617	328 aa		7.6	□□□□□ -1.19
VTI1A-208	ENST00000494728	RAB4B	P61018	213 aa		7.6	□□□□□ -1.19
VTI1A-208	ENST00000494728	TMUB2	Q71RG4	321 aa		7.6	□□□□□ -1.19
VTI1A-208	ENST00000494728		Q8N976	141 aa		7.6	□□□□□ -1.19
VTI1A-208	ENST00000494728	C11orf52	Q96A22	123 aa		7.6	□□□□□ -1.19
VTI1A-208	ENST00000494728	KRTAP10-4	P60372	401 aa	Predicted RBP	7.59	□□□□□ -1.19
VTI1A-208	ENST00000494728	CENPW	Q5EE01	88 aa		7.59	□□□□□ -1.19
VTI1A-208	ENST00000494728	AKAP14	Q86UN6	197 aa		7.59	□□□□□ -1.19
VTI1A-208	ENST00000494728	TCTE3	Q8IZS6	198 aa		7.59	□□□□□ -1.19
VTI1A-208	ENST00000494728	C15orf54	Q8N8G6	183 aa		7.59	□□□□□ -1.19
VTI1A-208	ENST00000494728	CHCHD7	Q9BUK0	85 aa		7.59	□□□□□ -1.19
VTI1A-208	ENST00000494728	GNG13	Q9P2W3	67 aa		7.59	□□□□□ -1.19
VTI1A-208	ENST00000494728	S100A9	P06702	114 aa	Known RBP	7.58	□□□□□ -1.2
VTI1A-208	ENST00000494728	IGLC6	P0CF74	106 aa		7.58	□□□□□ -1.2
VTI1A-208	ENST00000494728	SPANXN1	Q5VSR9	72 aa		7.58	□□□□□ -1.2
VTI1A-208	ENST00000494728	CLPSL2	Q6UWE3	100 aa		7.58	□□□□□ -1.2
VTI1A-208	ENST00000494728	RMI2	Q96E14	147 aa		7.58	□□□□□ -1.2
VTI1A-208	ENST00000494728	COX11	Q9Y6N1	276 aa		7.58	□□□□□ -1.2
VTI1A-208	ENST00000494728	HMCN2	Q8NDA2	5059 aa		7.58	□□□□□ -1.2
VTI1A-208	ENST00000494728	TRBV20OR9-2	A0A075B6H5	130 aa		7.57	□□□□□ -1.2
VTI1A-208	ENST00000494728	RAB19	A4D1S5	217 aa		7.57	□□□□□ -1.2
VTI1A-208	ENST00000494728	TMEM262	E9PQX1	116 aa		7.57	□□□□□ -1.2
VTI1A-208	ENST00000494728	AP1S3	Q96PC3	154 aa		7.57	□□□□□ -1.2
VTI1A-208	ENST00000494728	MANBAL	Q9NQG1	85 aa		7.57	□□□□□ -1.2
VTI1A-208	ENST00000494728	VAX2	Q9UIW0	290 aa		7.57	□□□□□ -1.2
VTI1A-208	ENST00000494728	TRAV1-1	A0A0B4J248	108 aa		7.56	□□□□□ -1.2
VTI1A-208	ENST00000494728		A0A1B0GVG6	124 aa		7.56	□□□□□ -1.2
VTI1A-208	ENST00000494728	C19orf71	A6NCJ1	209 aa		7.56	□□□□□ -1.2
VTI1A-208	ENST00000494728		F5H697	171 aa		7.56	□□□□□ -1.2
VTI1A-208	ENST00000494728	LOR	P23490	312 aa	Predicted RBP	7.56	□□□□□ -1.2
VTI1A-208	ENST00000494728	EIF5A	P63241	154 aa	Known RBP	7.56	□□□□□ -1.2
VTI1A-208	ENST00000494728	KRTAP26-1	Q6PEX3	210 aa		7.56	□□□□□ -1.2
VTI1A-208	ENST00000494728	CIRBP-AS1	Q8TBR5	109 aa		7.56	□□□□□ -1.2
VTI1A-208	ENST00000494728	CHCHD5	Q9BSY4	110 aa		7.56	□□□□□ -1.2
VTI1A-208	ENST00000494728	TPPP3	Q9BW30	176 aa		7.56	□□□□□ -1.2
VTI1A-208	ENST00000494728	C1orf43	Q9BWL3	253 aa		7.56	□□□□□ -1.2
VTI1A-208	ENST00000494728		M0QY20	66 aa		7.55	□□□□□ -1.2
VTI1A-208	ENST00000494728	HLA-DQA1	P01909	254 aa		7.55	□□□□□ -1.2
VTI1A-208	ENST00000494728	CRP	P02741	224 aa		7.55	□□□□□ -1.2
VTI1A-208	ENST00000494728	ANG	P03950	147 aa	Known RBP	7.55	□□□□□ -1.2
VTI1A-208	ENST00000494728	MGP	P08493	103 aa		7.55	□□□□□ -1.2
VTI1A-208	ENST00000494728	RBX1	P62877	108 aa		7.55	□□□□□ -1.2
VTI1A-208	ENST00000494728	GAGE6	Q13070	117 aa		7.55	□□□□□ -1.2
VTI1A-208	ENST00000494728	ELOB	Q15370	118 aa		7.55	□□□□□ -1.2
VTI1A-208	ENST00000494728	SUMO4	Q6EEV6	95 aa		7.55	□□□□□ -1.2
VTI1A-208	ENST00000494728	CHAC1	Q9BUX1	264 aa		7.55	□□□□□ -1.2
VTI1A-208	ENST00000494728	USP17L23	D6RBM5	183 aa		7.54	□□□□□ -1.2
VTI1A-208	ENST00000494728	PRSS1	P07477	247 aa		7.54	□□□□□ -1.2
VTI1A-208	ENST00000494728		Q0VG73	95 aa		7.54	□□□□□ -1.2
VTI1A-208	ENST00000494728	KCNIP4	Q6PIL6	250 aa		7.54	□□□□□ -1.2
VTI1A-208	ENST00000494728	FER1L6-AS1	Q8NA97	138 aa		7.54	□□□□□ -1.2
VTI1A-208	ENST00000494728	OR2D3	Q8NGH3	330 aa		7.54	□□□□□ -1.2
VTI1A-208	ENST00000494728	DEFB104A	Q8WTQ1	72 aa		7.54	□□□□□ -1.2
VTI1A-208	ENST00000494728	GFRA4	Q9GZZ7	299 aa		7.54	□□□□□ -1.2
VTI1A-208	ENST00000494728	PRR34	Q9NV39	138 aa		7.54	□□□□□ -1.2
VTI1A-208	ENST00000494728	PLA2G1B	P04054	148 aa	Known RBP	7.53	□□□□□ -1.2
VTI1A-208	ENST00000494728	SULT1A2	P50226	295 aa		7.53	□□□□□ -1.2
VTI1A-208	ENST00000494728	MEF2B	Q02080	365 aa	Predicted RBP	7.53	□□□□□ -1.2
VTI1A-208	ENST00000494728	LINC00269	Q8N2A0	174 aa		7.53	□□□□□ -1.2
VTI1A-208	ENST00000494728	PANO1	I0J062	215 aa		7.52	□□□□□ -1.21
VTI1A-208	ENST00000494728	SMIM17	P0DL12	118 aa		7.52	□□□□□ -1.21
VTI1A-208	ENST00000494728	BCL2	P10415	239 aa		7.52	□□□□□ -1.21
VTI1A-208	ENST00000494728	GNG4	P50150	75 aa		7.52	□□□□□ -1.21
VTI1A-208	ENST00000494728	NKX2-5	P52952	324 aa	Predicted RBP	7.52	□□□□□ -1.21
VTI1A-208	ENST00000494728	MIA	Q16674	131 aa		7.52	□□□□□ -1.21
VTI1A-208	ENST00000494728	IQCJ	Q1A5X6	159 aa		7.52	□□□□□ -1.21
VTI1A-208	ENST00000494728	C9orf62	Q8N4C0	152 aa		7.52	□□□□□ -1.21
VTI1A-208	ENST00000494728	IGLV10-54	A0A075B6I4	117 aa		7.51	□□□□□ -1.21
VTI1A-208	ENST00000494728	TRBV25-1	A0A075B6N4	114 aa		7.51	□□□□□ -1.21
VTI1A-208	ENST00000494728	CTRL	P40313	264 aa		7.51	□□□□□ -1.21
VTI1A-208	ENST00000494728	EIF5AL1	Q6IS14	154 aa	Known RBP	7.51	□□□□□ -1.21
VTI1A-208	ENST00000494728	LYZL1	Q6UWQ5	148 aa		7.51	□□□□□ -1.21
VTI1A-208	ENST00000494728	SLC51B	Q86UW2	128 aa		7.51	□□□□□ -1.21
VTI1A-208	ENST00000494728	C20orf203	Q8NBC4	194 aa		7.51	□□□□□ -1.21
VTI1A-208	ENST00000494728	IGLV4-60	A0A075B6I1	120 aa		7.5	□□□□□ -1.21
VTI1A-208	ENST00000494728	IGHV1-24	A0A0C4DH33	117 aa		7.5	□□□□□ -1.21
VTI1A-208	ENST00000494728	KRTAP29-1	A8MX34	341 aa	Predicted RBP	7.5	□□□□□ -1.21
VTI1A-208	ENST00000494728		K7EN84	100 aa		7.5	□□□□□ -1.21
VTI1A-208	ENST00000494728		P01737	135 aa		7.5	□□□□□ -1.21
VTI1A-208	ENST00000494728	RAB5C	P51148	216 aa		7.5	□□□□□ -1.21
VTI1A-208	ENST00000494728	HNRNPA3	P51991	378 aa	Known RBP	7.5	□□□□□ -1.21
VTI1A-208	ENST00000494728	SMIM12	Q96EX1	92 aa		7.5	□□□□□ -1.21
VTI1A-208	ENST00000494728	MED9	Q9NWA0	146 aa		7.5	□□□□□ -1.21
VTI1A-208	ENST00000494728	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	7.5	□□□□□ -1.21
VTI1A-208	ENST00000494728	TRAV26-2	A0A0B4J265	109 aa		7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	PDE6D	O43924	150 aa		7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	NTF3	P20783	257 aa		7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	RPS20	P60866	119 aa	Known RBP	7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	CACNG7	P62955	275 aa		7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	REG3A	Q06141	175 aa		7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	C14orf177	Q52M58	125 aa		7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	TMEM97	Q5BJF2	176 aa		7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	RASL11A	Q6T310	242 aa		7.49	□□□□□ -1.21
VTI1A-208	ENST00000494728	NUDT10	Q8NFP7	164 aa		7.49	□□□□□ -1.21

Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms