RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 Q6ZRN7 208 aaPredicted RBP9.6□□□□□ -0.87
VAMP4-203ENST00000474047 SPATA12Q7Z6I5 190 aa9.6□□□□□ -0.87
VAMP4-203ENST00000474047 LINC01551Q86U37 167 aa9.6□□□□□ -0.87
VAMP4-203ENST00000474047 A0A087WX48 190 aa9.59□□□□□ -0.87
VAMP4-203ENST00000474047 C15orf54Q8N8G6 183 aa9.59□□□□□ -0.87
VAMP4-203ENST00000474047 PGLYRP4Q96LB8 373 aa9.59□□□□□ -0.87
VAMP4-203ENST00000474047 TMEM262E9PQX1 116 aa9.59□□□□□ -0.87
VAMP4-203ENST00000474047 RAB14P61106 215 aa9.59□□□□□ -0.87
VAMP4-203ENST00000474047 SUMO4Q6EEV6 95 aa9.59□□□□□ -0.87
VAMP4-203ENST00000474047 TMEM97Q5BJF2 176 aa9.58□□□□□ -0.88
VAMP4-203ENST00000474047 CT83Q5H943 113 aa9.58□□□□□ -0.88
VAMP4-203ENST00000474047 DAZ4Q86SG3 579 aaKnown RBP9.58□□□□□ -0.88
VAMP4-203ENST00000474047 GTSF1Q8WW33 167 aa9.58□□□□□ -0.88
VAMP4-203ENST00000474047 DNAJC30Q96LL9 226 aa9.58□□□□□ -0.88
VAMP4-203ENST00000474047 SMDT1Q9H4I9 107 aa9.58□□□□□ -0.88
VAMP4-203ENST00000474047 DAZ3Q9NR90 486 aaKnown RBP9.58□□□□□ -0.88
VAMP4-203ENST00000474047 TRBV6-8A0A0A6YYG3 113 aa9.57□□□□□ -0.88
VAMP4-203ENST00000474047 M0QY20 66 aa9.57□□□□□ -0.88
VAMP4-203ENST00000474047 RASL11AQ6T310 242 aa9.57□□□□□ -0.88
VAMP4-203ENST00000474047 Q8N3U1 123 aa9.57□□□□□ -0.88
VAMP4-203ENST00000474047 CNFNQ9BYD5 112 aa9.57□□□□□ -0.88
VAMP4-203ENST00000474047 OSTCQ9NRP0 149 aa9.57□□□□□ -0.88
VAMP4-203ENST00000474047 TRAV8-3A0A0A6YYJ7 113 aa9.56□□□□□ -0.88
VAMP4-203ENST00000474047 LAGE3Q14657 143 aa9.56□□□□□ -0.88
VAMP4-203ENST00000474047 ELOBQ15370 118 aa9.56□□□□□ -0.88
VAMP4-203ENST00000474047 ADIRFQ15847 76 aa9.56□□□□□ -0.88
VAMP4-203ENST00000474047 NIT1Q86X76 327 aa9.56□□□□□ -0.88
VAMP4-203ENST00000474047 CHCHD5Q9BSY4 110 aa9.56□□□□□ -0.88
VAMP4-203ENST00000474047 TM2D2Q9BX73 214 aa9.56□□□□□ -0.88
VAMP4-203ENST00000474047 NAT8Q9UHE5 227 aa9.56□□□□□ -0.88
VAMP4-203ENST00000474047 SRSF3P84103 164 aaKnown RBP9.56□□□□□ -0.88
VAMP4-203ENST00000474047 TSKUQ8WUA8 353 aa9.56□□□□□ -0.88
VAMP4-203ENST00000474047 DNAH17Q9UFH2 4485 aa9.55□□□□□ -0.88
VAMP4-203ENST00000474047 C9JQL5 133 aa9.55□□□□□ -0.88
VAMP4-203ENST00000474047 PKIAP61925 76 aa9.55□□□□□ -0.88
VAMP4-203ENST00000474047 GFRA4Q9GZZ7 299 aa9.55□□□□□ -0.88
VAMP4-203ENST00000474047 NIT2Q9NQR4 276 aa9.55□□□□□ -0.88
VAMP4-203ENST00000474047 KLK12Q9UKR0 248 aa9.55□□□□□ -0.88
VAMP4-203ENST00000474047 HECTD4Q9Y4D8 3996 aa9.55□□□□□ -0.88
VAMP4-203ENST00000474047 PCLOQ9Y6V0 5065 aa9.55□□□□□ -0.88
VAMP4-203ENST00000474047 DNAH2Q9P225 4427 aa9.55□□□□□ -0.88
VAMP4-203ENST00000474047 A0A087WTM6 91 aa9.54□□□□□ -0.88
VAMP4-203ENST00000474047 HIGD1CA8MV81 97 aa9.54□□□□□ -0.88
VAMP4-203ENST00000474047 RPL23P62829 140 aaKnown RBP9.54□□□□□ -0.88
VAMP4-203ENST00000474047 ISOC2Q96AB3 205 aa9.54□□□□□ -0.88
VAMP4-203ENST00000474047 CHCHD7Q9BUK0 85 aa9.54□□□□□ -0.88
VAMP4-203ENST00000474047 TRBV25-1A0A075B6N4 114 aa9.53□□□□□ -0.88
VAMP4-203ENST00000474047 A0A1B0GUT8 65 aa9.53□□□□□ -0.88
VAMP4-203ENST00000474047 FOXA3P55318 350 aaPredicted RBP9.53□□□□□ -0.88
VAMP4-203ENST00000474047 KRTAP10-2P60368 255 aa9.53□□□□□ -0.88
VAMP4-203ENST00000474047 RMI2Q96E14 147 aa9.53□□□□□ -0.88
VAMP4-203ENST00000474047 PGPEP1Q9NXJ5 209 aa9.53□□□□□ -0.88
VAMP4-203ENST00000474047 FAM231BA6NCW3 169 aa9.53□□□□□ -0.88
VAMP4-203ENST00000474047 TRAV26-2A0A0B4J265 109 aa9.52□□□□□ -0.89
VAMP4-203ENST00000474047 IGHV1-24A0A0C4DH33 117 aa9.52□□□□□ -0.89
VAMP4-203ENST00000474047 UBE2WQ96B02 151 aa9.52□□□□□ -0.89
VAMP4-203ENST00000474047 COX11Q9Y6N1 276 aa9.52□□□□□ -0.89
VAMP4-203ENST00000474047 V9GYV3 84 aa9.52□□□□□ -0.89
VAMP4-203ENST00000474047 FAT2Q9NYQ8 4349 aa9.52□□□□□ -0.89
VAMP4-203ENST00000474047 RIGQ13278 110 aa9.51□□□□□ -0.89
VAMP4-203ENST00000474047 NTM-AS1Q6ZSK4 140 aa9.51□□□□□ -0.89
VAMP4-203ENST00000474047 GATD1Q8NB37 220 aa9.51□□□□□ -0.89
VAMP4-203ENST00000474047 FRZBQ92765 325 aa9.51□□□□□ -0.89
VAMP4-203ENST00000474047 IGKV2D-24A0A075B6R9 120 aa9.51□□□□□ -0.89
VAMP4-203ENST00000474047 CRPP02741 224 aa9.51□□□□□ -0.89
VAMP4-203ENST00000474047 ANGP03950 147 aaKnown RBP9.51□□□□□ -0.89
VAMP4-203ENST00000474047 GAGE6Q13070 117 aa9.51□□□□□ -0.89
VAMP4-203ENST00000474047 NAT8BQ9UHF3 227 aa9.51□□□□□ -0.89
VAMP4-203ENST00000474047 HERC2O95714 4834 aa9.5□□□□□ -0.89
VAMP4-203ENST00000474047 Q0VG73 95 aa9.5□□□□□ -0.89
VAMP4-203ENST00000474047 COTL1Q14019 142 aa9.5□□□□□ -0.89
VAMP4-203ENST00000474047 MPV17L2Q567V2 206 aa9.5□□□□□ -0.89
VAMP4-203ENST00000474047 CDPF1Q6NVV7 123 aa9.5□□□□□ -0.89
VAMP4-203ENST00000474047 UBE2L6O14933 153 aa9.49□□□□□ -0.89
VAMP4-203ENST00000474047 FUSP35637 526 aaKnown RBP eCLIP9.49□□□□□ -0.89
VAMP4-203ENST00000474047 IQCJQ1A5X6 159 aa9.49□□□□□ -0.89
VAMP4-203ENST00000474047 ATRAIDQ6UW56 229 aa9.49□□□□□ -0.89
VAMP4-203ENST00000474047 NUP35Q8NFH5 326 aa9.49□□□□□ -0.89
VAMP4-203ENST00000474047 DEFB104AQ8WTQ1 72 aa9.49□□□□□ -0.89
VAMP4-203ENST00000474047 TMEM243Q9BU79 118 aa9.49□□□□□ -0.89
VAMP4-203ENST00000474047 RPL39LQ96EH5 51 aaKnown RBP9.48□□□□□ -0.89
VAMP4-203ENST00000474047 TMEM191AQ9H0A3 160 aa9.48□□□□□ -0.89
VAMP4-203ENST00000474047 AMTP48728 403 aa9.48□□□□□ -0.89
VAMP4-203ENST00000474047 Q8N976 141 aa9.48□□□□□ -0.89
VAMP4-203ENST00000474047 PKD1P98161 4303 aa9.47□□□□□ -0.89
VAMP4-203ENST00000474047 LRCOL1A6NCL2 159 aa9.47□□□□□ -0.89
VAMP4-203ENST00000474047 RBX1P62877 108 aa9.47□□□□□ -0.89
VAMP4-203ENST00000474047 C1orf43Q9BWL3 253 aa9.47□□□□□ -0.89
VAMP4-203ENST00000474047 RYR1P21817 5038 aa9.47□□□□□ -0.89
VAMP4-203ENST00000474047 SMIM27A0A1W2PRY6 76 aa9.46□□□□□ -0.89
VAMP4-203ENST00000474047 PMCHP20382 165 aa9.46□□□□□ -0.89
VAMP4-203ENST00000474047 CLLU1Q5K131 121 aa9.46□□□□□ -0.89
VAMP4-203ENST00000474047 IGLV5-52A0A0A0MRZ9 124 aa9.45□□□□□ -0.9
VAMP4-203ENST00000474047 LECT2O14960 151 aa9.45□□□□□ -0.9
VAMP4-203ENST00000474047 Q8N814 137 aa9.45□□□□□ -0.9
VAMP4-203ENST00000474047 BAALCQ8WXS3 180 aa9.45□□□□□ -0.9
VAMP4-203ENST00000474047 MRAP2Q96G30 205 aa9.45□□□□□ -0.9
VAMP4-203ENST00000474047 ST20Q9HBF5 79 aa9.45□□□□□ -0.9
VAMP4-203ENST00000474047 SDHAF1A6NFY7 115 aa9.45□□□□□ -0.9
VAMP4-203ENST00000474047 CDK2AP2O75956 126 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms