RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 RPL39P62891 51 aaKnown RBP4.49□□□□□ -1.69
CLK1-210ENST00000473565 ZC2HC1BQ5TFG8 222 aa4.49□□□□□ -1.69
CLK1-210ENST00000473565 GTSCR1Q86UQ5 136 aa4.49□□□□□ -1.69
CLK1-210ENST00000473565 CSNK1G2-AS1Q8NCQ2 148 aa4.49□□□□□ -1.69
CLK1-210ENST00000473565 STPG4Q8N801 248 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 C20orf144Q9BQM9 153 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 CMC4P56277 68 aaPredicted RBP4.48□□□□□ -1.69
CLK1-210ENST00000473565 DEFA6Q01524 100 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 OXLD1Q5BKU9 147 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 UFSP1Q6NVU6 142 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 ZNF479Q96JC4 524 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 FAM110AQ9BQ89 295 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 GOLT1BQ9Y3E0 138 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 IGHV3-38A0A0C4DH36 116 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 PLAC8L1A1L4L8 177 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 A8MWV9 139 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 IGLC3P0DOY3 106 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 RIPPLY3P57055 190 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 C2orf66Q6UXQ4 117 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 ZFP2Q6ZN57 461 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 LINC00467Q9BRT7 94 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 NDUFAF3Q9BU61 184 aa4.48□□□□□ -1.69
CLK1-210ENST00000473565 GAGE12BA1L429 117 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 EREGO14944 169 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 GAGE7O76087 117 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 GAGE12FP0CL80 117 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 GAGE12GP0CL81 117 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 GAGE12IP0CL82 117 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 ANKRD39Q53RE8 183 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 IL17DQ8TAD2 202 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 TMEM263Q8WUH6 116 aaKnown RBP4.47□□□□□ -1.69
CLK1-210ENST00000473565 PHLDA1Q8WV24 401 aaPredicted RBP4.47□□□□□ -1.69
CLK1-210ENST00000473565 SCGB3A1Q96QR1 104 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 TP53TG1Q9Y2A0 90 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 TENM3Q9P273 2699 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 VCYO14598 125 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 DEFB4AO15263 64 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 ODF1Q14990 250 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 ORMDL2Q53FV1 153 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 OPRPNQ99935 248 aaPredicted RBP4.47□□□□□ -1.69
CLK1-210ENST00000473565 MIEN1Q9BRT3 115 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 SPXQ9BT56 116 aa4.47□□□□□ -1.69
CLK1-210ENST00000473565 MGAM2Q2M2H8 2515 aa4.46□□□□□ -1.69
CLK1-210ENST00000473565 PPP1R17O96001 155 aa4.46□□□□□ -1.69
CLK1-210ENST00000473565 INSL3P51460 131 aa4.46□□□□□ -1.69
CLK1-210ENST00000473565 RRN3P1Q2M238 152 aa4.46□□□□□ -1.69
CLK1-210ENST00000473565 DEFB135Q30KP9 77 aa4.46□□□□□ -1.69
CLK1-210ENST00000473565 LGALS9BQ3B8N2 356 aa4.46□□□□□ -1.69
CLK1-210ENST00000473565 LGALS9CQ6DKI2 356 aa4.46□□□□□ -1.69
CLK1-210ENST00000473565 C3orf56Q8N813 242 aa4.46□□□□□ -1.69
CLK1-210ENST00000473565 OR4C5Q8NGB2 326 aa4.46□□□□□ -1.69
CLK1-210ENST00000473565 KIR2DL4Q99706 377 aa4.46□□□□□ -1.69
CLK1-210ENST00000473565 MRPL35Q9NZE8 188 aaKnown RBP4.46□□□□□ -1.69
CLK1-210ENST00000473565 ZMAT5Q9UDW3 170 aaKnown RBP4.46□□□□□ -1.69
CLK1-210ENST00000473565 TRBV6-5A0A0K0K1A5 114 aa4.46□□□□□ -1.7
CLK1-210ENST00000473565 TRBV27A0A0K0K1C4 114 aa4.46□□□□□ -1.7
CLK1-210ENST00000473565 RS1O15537 224 aa4.46□□□□□ -1.7
CLK1-210ENST00000473565 TSHBP01222 138 aa4.46□□□□□ -1.7
CLK1-210ENST00000473565 CTAG1AP78358 180 aa4.46□□□□□ -1.7
CLK1-210ENST00000473565 Q6ZN92 141 aa4.46□□□□□ -1.7
CLK1-210ENST00000473565 NEXN-AS1Q8NBZ9 246 aa4.46□□□□□ -1.7
CLK1-210ENST00000473565 TOMM6Q96B49 74 aa4.46□□□□□ -1.7
CLK1-210ENST00000473565 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.46□□□□□ -1.7
CLK1-210ENST00000473565 WFDC9Q8NEX5 89 aa4.46□□□□□ -1.7
CLK1-210ENST00000473565 C1QTNF4Q9BXJ3 329 aa4.46□□□□□ -1.7
CLK1-210ENST00000473565 ATP5LO75964 103 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 BATFQ16520 125 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 CEMP1Q6PRD7 247 aaPredicted RBP4.45□□□□□ -1.7
CLK1-210ENST00000473565 BAALCQ8WXS3 180 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 TTTY13Q9BZ97 58 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 TNFRSF18Q9Y5U5 241 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 DNAH3Q8TD57 4116 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 TRGV2A0A075B6R0 118 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 LOC100131303A0A0U1RQF7 123 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 HSBP1L1C9JCN9 74 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 DEFB130BP0DP73 79 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 DEFB130AP0DP74 79 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 C16orf74Q96GX8 76 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 SNHG12Q9BXW3 62 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 UQCR10Q9UDW1 63 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 CYSLTR1Q9Y271 337 aa4.45□□□□□ -1.7
CLK1-210ENST00000473565 H7C1H1 209 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 I3L3M4 83 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 KRTAP10-11P60412 298 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 RPL32P62910 135 aaKnown RBP4.44□□□□□ -1.7
CLK1-210ENST00000473565 RNASE13Q5GAN3 156 aaKnown RBP4.44□□□□□ -1.7
CLK1-210ENST00000473565 X6R8D5 127 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 IGKV2D-26A0A0A0MRZ7 120 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 RHODO00212 210 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 NMUP48645 174 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 HNRNPA3P51991 378 aaKnown RBP4.44□□□□□ -1.7
CLK1-210ENST00000473565 PCP2Q8IVA1 136 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 SLC25A29Q8N8R3 303 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 ZNRF2Q8NHG8 242 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.44□□□□□ -1.7
CLK1-210ENST00000473565 A0A087WX48 190 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 IGKV2-29A2NJV5 120 aaPredicted RBP4.44□□□□□ -1.7
CLK1-210ENST00000473565 GAGE12JA6NER3 117 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 PRSS29PA6NIE9 313 aa4.44□□□□□ -1.7
CLK1-210ENST00000473565 IGIPA6NJ69 53 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms